Ggra10352.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10352.t1
Unique NameGgra10352.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1635553..1636272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118168.MC7420_5515
Preferred namegyrA
PFAMsDNA_gyraseA_C,DNA_topoisoIV
Max annot lvl1117|Cyanobacteria
KEGG koko:K02469
Evalue9.69e-106
EggNOG OGsCOG0188@1|root,COG0188@2|Bacteria,1G1RQ@1117|Cyanobacteria,1H8XT@1150|Oscillatoriales
EC5.99.1.3
DescriptionA type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
COG categoryL
BRITEko00000,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10352Ggra10352Gracilaria gracilis GNS1m malegenetig00000016_pilon 1635553..1636272 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10352.t1.stop1Ggra10352.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1635553..1635555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10352.t1.CDS1Ggra10352.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1635553..1636272 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10352.t1.exon1Ggra10352.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1635553..1636272 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10352.t1.start1Ggra10352.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1636270..1636272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10352.t1Ggra10352.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1635553..1636272 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10352.t1 ID=Ggra10352.t1|Name=Ggra10352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp
MSVILGRAMPDVRDGLKPVHRCILYAMHVLGLSPTGQFRKCARVVGEVLG
NYHPHGDTAVYDALVRMDQSFSMSVPLVDGHGNFGSTDEDPPAAMRYTEC
KLSCLATYTFLSDIDCNTVSFKPNFDSSENEPLVLPVKLPNLLVNGGSGI
AVGMATNTPPHNLSELVSALIALIRGPNITHEQLFELVPAPDFPTGGQIM
GTKGAQEMYRTGRGRVIVRACAHTETWVHRTRRNKGMLL*
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spliced messenger RNA

>Ggra10352.t1 ID=Ggra10352.t1|Name=Ggra10352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000016_pilon:1635553..1636272- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTCATTCTAGGTCGCGCCATGCCAGACGTGCGTGACGGACTGAA
ACCGGTGCATCGTTGTATCCTGTATGCCATGCATGTGCTTGGCTTAAGTC
CCACCGGTCAGTTTCGCAAGTGTGCGCGTGTGGTCGGAGAGGTTCTTGGA
AATTATCATCCTCATGGCGACACCGCAGTATATGATGCGCTTGTTCGCAT
GGATCAGTCTTTCTCCATGTCAGTTCCTCTCGTAGACGGTCACGGAAATT
TCGGTTCCACAGATGAAGATCCTCCTGCTGCTATGCGATATACTGAATGT
AAACTGTCTTGTCTCGCCACTTACACATTTCTCTCTGACATTGATTGCAA
CACCGTTTCTTTCAAGCCGAATTTTGATAGTTCTGAGAACGAACCGCTTG
TTCTGCCTGTCAAGCTTCCCAATCTCTTGGTCAACGGAGGTTCTGGTATT
GCTGTCGGCATGGCAACCAATACCCCGCCACACAACCTCAGTGAACTTGT
ATCCGCCCTAATTGCGCTCATAAGAGGTCCCAACATTACCCACGAACAGT
TGTTCGAACTGGTACCGGCTCCAGACTTTCCCACAGGTGGGCAGATTATG
GGTACGAAGGGCGCGCAAGAAATGTATCGAACTGGTCGCGGACGTGTCAT
AGTTCGAGCTTGTGCCCATACCGAGACTTGGGTGCACAGAACAAGACGAA
ACAAAGGGATGCTATTGTAA
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protein sequence of Ggra10352.t1

>Ggra10352.t1 ID=Ggra10352.t1|Name=Ggra10352.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MSVILGRAMPDVRDGLKPVHRCILYAMHVLGLSPTGQFRKCARVVGEVLG
NYHPHGDTAVYDALVRMDQSFSMSVPLVDGHGNFGSTDEDPPAAMRYTEC
KLSCLATYTFLSDIDCNTVSFKPNFDSSENEPLVLPVKLPNLLVNGGSGI
AVGMATNTPPHNLSELVSALIALIRGPNITHEQLFELVPAPDFPTGGQIM
GTKGAQEMYRTGRGRVIVRACAHTETWVHRTRRNKGMLL*
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mRNA from alignment at tig00000016_pilon:1635553..1636272-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10352.t1 ID=Ggra10352.t1|Name=Ggra10352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000016_pilon:1635553..1636272- (Gracilaria gracilis GNS1m male)
ATGTCCGTCATTCTAGGTCGCGCCATGCCAGACGTGCGTGACGGACTGAA
ACCGGTGCATCGTTGTATCCTGTATGCCATGCATGTGCTTGGCTTAAGTC
CCACCGGTCAGTTTCGCAAGTGTGCGCGTGTGGTCGGAGAGGTTCTTGGA
AATTATCATCCTCATGGCGACACCGCAGTATATGATGCGCTTGTTCGCAT
GGATCAGTCTTTCTCCATGTCAGTTCCTCTCGTAGACGGTCACGGAAATT
TCGGTTCCACAGATGAAGATCCTCCTGCTGCTATGCGATATACTGAATGT
AAACTGTCTTGTCTCGCCACTTACACATTTCTCTCTGACATTGATTGCAA
CACCGTTTCTTTCAAGCCGAATTTTGATAGTTCTGAGAACGAACCGCTTG
TTCTGCCTGTCAAGCTTCCCAATCTCTTGGTCAACGGAGGTTCTGGTATT
GCTGTCGGCATGGCAACCAATACCCCGCCACACAACCTCAGTGAACTTGT
ATCCGCCCTAATTGCGCTCATAAGAGGTCCCAACATTACCCACGAACAGT
TGTTCGAACTGGTACCGGCTCCAGACTTTCCCACAGGTGGGCAGATTATG
GGTACGAAGGGCGCGCAAGAAATGTATCGAACTGGTCGCGGACGTGTCAT
AGTTCGAGCTTGTGCCCATACCGAGACTTGGGTGCACAGAACAAGACGAA
ACAAAGGGATGCTATTGTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1635553..1636272-

>Ggra10352.t1 ID=Ggra10352.t1|Name=Ggra10352.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00000016_pilon:1635553..1636272- (Gracilaria gracilis GNS1m male)
ATGTCCGTCATTCTAGGTCGCGCCATGCCAGACGTGCGTGACGGACTGAA
ACCGGTGCATCGTTGTATCCTGTATGCCATGCATGTGCTTGGCTTAAGTC
CCACCGGTCAGTTTCGCAAGTGTGCGCGTGTGGTCGGAGAGGTTCTTGGA
AATTATCATCCTCATGGCGACACCGCAGTATATGATGCGCTTGTTCGCAT
GGATCAGTCTTTCTCCATGTCAGTTCCTCTCGTAGACGGTCACGGAAATT
TCGGTTCCACAGATGAAGATCCTCCTGCTGCTATGCGATATACTGAATGT
AAACTGTCTTGTCTCGCCACTTACACATTTCTCTCTGACATTGATTGCAA
CACCGTTTCTTTCAAGCCGAATTTTGATAGTTCTGAGAACGAACCGCTTG
TTCTGCCTGTCAAGCTTCCCAATCTCTTGGTCAACGGAGGTTCTGGTATT
GCTGTCGGCATGGCAACCAATACCCCGCCACACAACCTCAGTGAACTTGT
ATCCGCCCTAATTGCGCTCATAAGAGGTCCCAACATTACCCACGAACAGT
TGTTCGAACTGGTACCGGCTCCAGACTTTCCCACAGGTGGGCAGATTATG
GGTACGAAGGGCGCGCAAGAAATGTATCGAACTGGTCGCGGACGTGTCAT
AGTTCGAGCTTGTGCCCATACCGAGACTTGGGTGCACAGAACAAGACGAA
ACAAAGGGATGCTATTGTAA
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