Ggra10351.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10351.t1
Unique Name	Ggra10351.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	327

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:1610848..1611828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36080.S2J4S7
PFAMs	EamA
Max annot lvl	4751\|Fungi
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016020,GO:0016021,GO:0031224,GO:0044424,GO:0044425,GO:0044464
Evalue	9.55e-25
EggNOG OGs	COG0697@1\|root,KOG4510@2759\|Eukaryota,395GA@33154\|Opisthokonta,3NUM2@4751\|Fungi,1GSM9@112252\|Fungi incertae sedis
Description	EamA-like transporter family
COG category	EG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10351	Ggra10351	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 1610848..1611828 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10351.t1.start1	Ggra10351.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 1610848..1610850 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10351.t1.CDS1	Ggra10351.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 1610848..1611828 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10351.t1.exon1	Ggra10351.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 1610848..1611828 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10351.t1.stop1	Ggra10351.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 1611826..1611828 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10351.t1	Ggra10351.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 1610848..1611828 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:1610848..1611828+
coding sequence from alignment at tig00000016_pilon:1610848..1611828+

mRNA sequence

>Ggra10351.t1 ID=Ggra10351.t1|Name=Ggra10351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp
MRSTKQDPEALPLLHQPLVSTELRGYAYMLSGAVCWALLSFFVHIGATKY
NFPTTNSIIIRAVVNLTLSSLYIAIARDVSILPTRAQLLPLTARSVAGTV
GCLSIFTALKYIPVGSATTIFCTSPVITTVLSAIFLHEPVTKVDLFALVS
SFIGVIFVAQPSFLFADHALEPITSNANHLFGVVCAFVAACCASTVYTLV
RSMGLRVHFILNVISLGIGISLLSLALVTKSDVYQMAHNREGLLVNMLGA
LSGFGCVASFSRGLQFCRAGPGMVIRTTDIPISFILGYFFLGERLSALSA
LGVALVVCAALAIALREAHGARSTRV*

spliced messenger RNA

>Ggra10351.t1 ID=Ggra10351.t1|Name=Ggra10351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000016_pilon:1610848..1611828+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGATCTACCAAACAAGATCCAGAGGCGCTGCCTCTGCTGCACCAGCC
CCTTGTGTCAACAGAGCTGCGCGGATATGCGTACATGCTATCGGGCGCAG
TATGTTGGGCTCTGCTCTCCTTCTTCGTGCACATCGGCGCCACCAAGTAC
AACTTTCCCACCACCAACTCCATCATCATTCGTGCCGTGGTTAACCTAAC
TCTGTCCTCCCTCTATATTGCCATTGCTCGTGATGTGAGCATACTTCCAA
CACGCGCCCAGCTGCTGCCATTGACCGCGCGTTCAGTTGCAGGAACAGTC
GGATGTCTAAGCATCTTCACTGCTCTCAAGTACATTCCGGTCGGAAGTGC
CACCACAATCTTCTGCACCAGCCCGGTCATCACTACTGTGCTTTCAGCCA
TCTTTCTTCACGAACCGGTCACTAAAGTGGATCTTTTCGCACTTGTTTCA
AGTTTCATTGGCGTAATCTTCGTTGCACAACCTTCTTTCTTGTTTGCCGA
TCACGCACTGGAGCCGATCACGTCGAACGCCAATCATCTATTCGGAGTTG
TCTGCGCTTTTGTTGCGGCGTGTTGTGCATCCACAGTGTACACACTGGTG
CGCTCCATGGGTTTGCGAGTGCACTTCATTCTAAACGTCATCTCGCTGGG
AATTGGAATATCCCTTCTCTCGCTTGCTCTTGTCACAAAGTCGGATGTGT
ATCAAATGGCACATAATAGAGAGGGCTTGCTCGTGAACATGTTGGGGGCG
TTGTCGGGCTTTGGTTGTGTTGCTTCTTTCAGTCGAGGGCTACAGTTTTG
TCGTGCGGGTCCTGGCATGGTCATCCGTACAACTGATATTCCCATTTCAT
TTATTCTCGGTTACTTTTTCCTTGGTGAACGTCTATCCGCTTTGAGCGCG
TTGGGTGTCGCGCTGGTGGTATGTGCGGCACTTGCTATTGCATTACGTGA
GGCACACGGCGCTCGATCCACACGAGTGTGA

protein sequence of Ggra10351.t1

>Ggra10351.t1 ID=Ggra10351.t1|Name=Ggra10351.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=327bp
MRSTKQDPEALPLLHQPLVSTELRGYAYMLSGAVCWALLSFFVHIGATKY
NFPTTNSIIIRAVVNLTLSSLYIAIARDVSILPTRAQLLPLTARSVAGTV
GCLSIFTALKYIPVGSATTIFCTSPVITTVLSAIFLHEPVTKVDLFALVS
SFIGVIFVAQPSFLFADHALEPITSNANHLFGVVCAFVAACCASTVYTLV
RSMGLRVHFILNVISLGIGISLLSLALVTKSDVYQMAHNREGLLVNMLGA
LSGFGCVASFSRGLQFCRAGPGMVIRTTDIPISFILGYFFLGERLSALSA
LGVALVVCAALAIALREAHGARSTRV*

mRNA from alignment at tig00000016_pilon:1610848..1611828+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10351.t1 ID=Ggra10351.t1|Name=Ggra10351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000016_pilon:1610848..1611828+ (Gracilaria gracilis GNS1m male)
ATGAGATCTACCAAACAAGATCCAGAGGCGCTGCCTCTGCTGCACCAGCC
CCTTGTGTCAACAGAGCTGCGCGGATATGCGTACATGCTATCGGGCGCAG
TATGTTGGGCTCTGCTCTCCTTCTTCGTGCACATCGGCGCCACCAAGTAC
AACTTTCCCACCACCAACTCCATCATCATTCGTGCCGTGGTTAACCTAAC
TCTGTCCTCCCTCTATATTGCCATTGCTCGTGATGTGAGCATACTTCCAA
CACGCGCCCAGCTGCTGCCATTGACCGCGCGTTCAGTTGCAGGAACAGTC
GGATGTCTAAGCATCTTCACTGCTCTCAAGTACATTCCGGTCGGAAGTGC
CACCACAATCTTCTGCACCAGCCCGGTCATCACTACTGTGCTTTCAGCCA
TCTTTCTTCACGAACCGGTCACTAAAGTGGATCTTTTCGCACTTGTTTCA
AGTTTCATTGGCGTAATCTTCGTTGCACAACCTTCTTTCTTGTTTGCCGA
TCACGCACTGGAGCCGATCACGTCGAACGCCAATCATCTATTCGGAGTTG
TCTGCGCTTTTGTTGCGGCGTGTTGTGCATCCACAGTGTACACACTGGTG
CGCTCCATGGGTTTGCGAGTGCACTTCATTCTAAACGTCATCTCGCTGGG
AATTGGAATATCCCTTCTCTCGCTTGCTCTTGTCACAAAGTCGGATGTGT
ATCAAATGGCACATAATAGAGAGGGCTTGCTCGTGAACATGTTGGGGGCG
TTGTCGGGCTTTGGTTGTGTTGCTTCTTTCAGTCGAGGGCTACAGTTTTG
TCGTGCGGGTCCTGGCATGGTCATCCGTACAACTGATATTCCCATTTCAT
TTATTCTCGGTTACTTTTTCCTTGGTGAACGTCTATCCGCTTTGAGCGCG
TTGGGTGTCGCGCTGGTGGTATGTGCGGCACTTGCTATTGCATTACGTGA
GGCACACGGCGCTCGATCCACACGAGTGTGA

Coding sequence (CDS) from alignment at tig00000016_pilon:1610848..1611828+

>Ggra10351.t1 ID=Ggra10351.t1|Name=Ggra10351.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000016_pilon:1610848..1611828+ (Gracilaria gracilis GNS1m male)
ATGAGATCTACCAAACAAGATCCAGAGGCGCTGCCTCTGCTGCACCAGCC
CCTTGTGTCAACAGAGCTGCGCGGATATGCGTACATGCTATCGGGCGCAG
TATGTTGGGCTCTGCTCTCCTTCTTCGTGCACATCGGCGCCACCAAGTAC
AACTTTCCCACCACCAACTCCATCATCATTCGTGCCGTGGTTAACCTAAC
TCTGTCCTCCCTCTATATTGCCATTGCTCGTGATGTGAGCATACTTCCAA
CACGCGCCCAGCTGCTGCCATTGACCGCGCGTTCAGTTGCAGGAACAGTC
GGATGTCTAAGCATCTTCACTGCTCTCAAGTACATTCCGGTCGGAAGTGC
CACCACAATCTTCTGCACCAGCCCGGTCATCACTACTGTGCTTTCAGCCA
TCTTTCTTCACGAACCGGTCACTAAAGTGGATCTTTTCGCACTTGTTTCA
AGTTTCATTGGCGTAATCTTCGTTGCACAACCTTCTTTCTTGTTTGCCGA
TCACGCACTGGAGCCGATCACGTCGAACGCCAATCATCTATTCGGAGTTG
TCTGCGCTTTTGTTGCGGCGTGTTGTGCATCCACAGTGTACACACTGGTG
CGCTCCATGGGTTTGCGAGTGCACTTCATTCTAAACGTCATCTCGCTGGG
AATTGGAATATCCCTTCTCTCGCTTGCTCTTGTCACAAAGTCGGATGTGT
ATCAAATGGCACATAATAGAGAGGGCTTGCTCGTGAACATGTTGGGGGCG
TTGTCGGGCTTTGGTTGTGTTGCTTCTTTCAGTCGAGGGCTACAGTTTTG
TCGTGCGGGTCCTGGCATGGTCATCCGTACAACTGATATTCCCATTTCAT
TTATTCTCGGTTACTTTTTCCTTGGTGAACGTCTATCCGCTTTGAGCGCG
TTGGGTGTCGCGCTGGTGGTATGTGCGGCACTTGCTATTGCATTACGTGA
GGCACACGGCGCTCGATCCACACGAGTGTGA