Ggra1035.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1035.t1
Unique NameGgra1035.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:792160..793600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog362976.HQ_1127A
PFAMsMFS_1
Max annot lvl183963|Halobacteria
KEGG koko:K08177
KEGG TC2.A.1.11
Evalue0.000148
EggNOG OGsCOG0477@1|root,arCOG00147@2157|Archaea,2XTS8@28890|Euryarchaeota,23S0V@183963|Halobacteria
DescriptionCOG0477 Permeases of the major facilitator superfamily
COG categoryG
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1035Ggra1035Gracilaria gracilis GNS1m malegenetig00000027_pilon 792160..793600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1035.t1Ggra1035.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 792160..793600 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1035.t1.start1Ggra1035.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 792160..792162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1035.t1.CDS1Ggra1035.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 792160..792586 +
Ggra1035.t1.CDS2Ggra1035.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000027_pilon 792666..793600 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1035.t1.exon1Ggra1035.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 792160..792586 +
Ggra1035.t1.exon2Ggra1035.t1.exon2Gracilaria gracilis GNS1m maleexontig00000027_pilon 792666..793600 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1035.t1.intron1Ggra1035.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000027_pilon 792587..792665 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1035.t1.stop1Ggra1035.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 793598..793600 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1035.t1 ID=Ggra1035.t1|Name=Ggra1035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=454bp
MTPTTQHVPPSLLSFWHPALAVLILFLAGSTFSLGVFIPQVEAFAEPAHH
LDGVWETAMGAMHFLSAPIMIVAGIYLDAGQIQCHSDLQLNQFATKTFRL
RLLNIVSTFAFASLALSAHGVANSNRFTLFIGVALQAFPLGLLYLTCIQA
LLAWVPKHAGIAVGVGHVAFGLGTVGLTQLFSVLISLWGPVTAIYASSVI
LATAGFLPSFLLKWPSRDGESHEEQDPLLQHFEDVERIPWRNLVYLPNFW
LYIVAVFTTSSSYMLNPYYFKLGHLFNRPFDQLVLLFNLANIASTIASLF
GTALTDVVGFGKGLFFSGSKNIMTFLMALQTVCFFLSIIINNTLNFAGFV
IIKTLLKIIVTCHVGCSALLARDLFGSKNSCVVFGFGAGLALGCGEAFSA
WLMAAVELAVGPASVPSNYNPFYWIATAWSAVGLVSIVKVQRQKNMEKYD
PFV*
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spliced messenger RNA

>Ggra1035.t1 ID=Ggra1035.t1|Name=Ggra1035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000027_pilon:792160..793600+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCCACTACTCAGCATGTGCCGCCTTCTCTGTTGTCATTCTGGCA
TCCGGCCCTAGCAGTGCTCATTCTCTTTCTCGCGGGCTCTACGTTTTCAC
TCGGCGTTTTCATCCCACAGGTTGAGGCCTTCGCCGAACCAGCCCACCAC
CTGGACGGAGTATGGGAGACGGCTATGGGCGCGATGCACTTTCTTTCCGC
TCCAATCATGATTGTAGCTGGAATATACCTCGACGCTGGACAGATTCAAT
GCCACTCTGATCTCCAACTCAACCAATTTGCCACCAAAACCTTTCGTCTC
CGCCTACTCAACATAGTCTCAACATTTGCGTTCGCGTCGTTGGCTCTCTC
TGCGCATGGCGTGGCGAACTCCAATCGCTTCACGTTATTCATCGGTGTCG
CTCTACAAGCCTTTCCTCTTGGCCTTCTCTATCTAACTTGTATACAGGCC
CTGCTAGCATGGGTTCCGAAGCACGCGGGTATAGCCGTGGGAGTTGGCCA
TGTCGCATTCGGGCTAGGGACGGTCGGCCTAACGCAACTGTTCAGTGTTC
TCATTAGTCTATGGGGCCCAGTTACTGCCATTTACGCTTCCTCCGTCATA
CTTGCGACAGCTGGTTTCCTACCATCCTTTCTGCTCAAGTGGCCTTCTCG
GGACGGCGAATCTCACGAAGAGCAGGATCCGTTGCTGCAACACTTTGAAG
ATGTTGAAAGGATCCCATGGCGCAATCTTGTCTACTTGCCCAACTTTTGG
CTCTATATTGTAGCTGTGTTTACCACCAGTTCCTCTTACATGTTGAACCC
GTATTATTTCAAGCTCGGGCACCTGTTCAACAGGCCCTTCGACCAATTAG
TGCTTCTTTTCAATCTGGCGAATATCGCCTCAACTATTGCCAGTCTGTTT
GGCACCGCTCTTACGGATGTGGTTGGGTTCGGCAAAGGATTGTTCTTCTC
TGGATCGAAGAACATCATGACTTTTTTGATGGCATTGCAGACTGTATGTT
TTTTTCTTTCCATCATTATCAACAATACTCTCAACTTTGCTGGCTTTGTG
ATTATTAAGACTCTGCTGAAGATTATCGTTACTTGTCATGTGGGATGCTC
AGCCCTCCTCGCCAGAGATCTCTTCGGCTCGAAAAATAGTTGTGTGGTGT
TTGGGTTTGGTGCCGGGCTTGCGCTCGGCTGCGGAGAAGCATTTTCTGCA
TGGCTCATGGCAGCGGTTGAACTTGCCGTGGGACCCGCATCAGTGCCGTC
GAACTACAACCCTTTTTACTGGATCGCCACTGCTTGGAGCGCAGTGGGTC
TAGTAAGTATCGTGAAGGTTCAAAGGCAGAAGAACATGGAAAAATATGAC
CCCTTTGTCTAG
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protein sequence of Ggra1035.t1

>Ggra1035.t1 ID=Ggra1035.t1|Name=Ggra1035.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=454bp
MTPTTQHVPPSLLSFWHPALAVLILFLAGSTFSLGVFIPQVEAFAEPAHH
LDGVWETAMGAMHFLSAPIMIVAGIYLDAGQIQCHSDLQLNQFATKTFRL
RLLNIVSTFAFASLALSAHGVANSNRFTLFIGVALQAFPLGLLYLTCIQA
LLAWVPKHAGIAVGVGHVAFGLGTVGLTQLFSVLISLWGPVTAIYASSVI
LATAGFLPSFLLKWPSRDGESHEEQDPLLQHFEDVERIPWRNLVYLPNFW
LYIVAVFTTSSSYMLNPYYFKLGHLFNRPFDQLVLLFNLANIASTIASLF
GTALTDVVGFGKGLFFSGSKNIMTFLMALQTVCFFLSIIINNTLNFAGFV
IIKTLLKIIVTCHVGCSALLARDLFGSKNSCVVFGFGAGLALGCGEAFSA
WLMAAVELAVGPASVPSNYNPFYWIATAWSAVGLVSIVKVQRQKNMEKYD
PFV*
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mRNA from alignment at tig00000027_pilon:792160..793600+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1035.t1 ID=Ggra1035.t1|Name=Ggra1035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1441bp|location=Sequence derived from alignment at tig00000027_pilon:792160..793600+ (Gracilaria gracilis GNS1m male)
ATGACTCCCACTACTCAGCATGTGCCGCCTTCTCTGTTGTCATTCTGGCA
TCCGGCCCTAGCAGTGCTCATTCTCTTTCTCGCGGGCTCTACGTTTTCAC
TCGGCGTTTTCATCCCACAGGTTGAGGCCTTCGCCGAACCAGCCCACCAC
CTGGACGGAGTATGGGAGACGGCTATGGGCGCGATGCACTTTCTTTCCGC
TCCAATCATGATTGTAGCTGGAATATACCTCGACGCTGGACAGATTCAAT
GCCACTCTGATCTCCAACTCAACCAATTTGCCACCAAAACCTTTCGTCTC
CGCCTACTCAACATAGTCTCAACATTTGCGTTCGCGTCGTTGGCTCTCTC
TGCGCATGGCGTGGCGAACTCCAATCGCTTCACGTTATTCATCGGTGTCG
CTCTACAAGCCTTTCCTCTTGGCCTTCGTAAGTTGCCTTTCGACTCACAG
CTTCTACTGCTCTTTCTGACACCGTCTTTCACGTCACTTTCACACGTCGA
AAACAGTCTATCTAACTTGTATACAGGCCCTGCTAGCATGGGTTCCGAAG
CACGCGGGTATAGCCGTGGGAGTTGGCCATGTCGCATTCGGGCTAGGGAC
GGTCGGCCTAACGCAACTGTTCAGTGTTCTCATTAGTCTATGGGGCCCAG
TTACTGCCATTTACGCTTCCTCCGTCATACTTGCGACAGCTGGTTTCCTA
CCATCCTTTCTGCTCAAGTGGCCTTCTCGGGACGGCGAATCTCACGAAGA
GCAGGATCCGTTGCTGCAACACTTTGAAGATGTTGAAAGGATCCCATGGC
GCAATCTTGTCTACTTGCCCAACTTTTGGCTCTATATTGTAGCTGTGTTT
ACCACCAGTTCCTCTTACATGTTGAACCCGTATTATTTCAAGCTCGGGCA
CCTGTTCAACAGGCCCTTCGACCAATTAGTGCTTCTTTTCAATCTGGCGA
ATATCGCCTCAACTATTGCCAGTCTGTTTGGCACCGCTCTTACGGATGTG
GTTGGGTTCGGCAAAGGATTGTTCTTCTCTGGATCGAAGAACATCATGAC
TTTTTTGATGGCATTGCAGACTGTATGTTTTTTTCTTTCCATCATTATCA
ACAATACTCTCAACTTTGCTGGCTTTGTGATTATTAAGACTCTGCTGAAG
ATTATCGTTACTTGTCATGTGGGATGCTCAGCCCTCCTCGCCAGAGATCT
CTTCGGCTCGAAAAATAGTTGTGTGGTGTTTGGGTTTGGTGCCGGGCTTG
CGCTCGGCTGCGGAGAAGCATTTTCTGCATGGCTCATGGCAGCGGTTGAA
CTTGCCGTGGGACCCGCATCAGTGCCGTCGAACTACAACCCTTTTTACTG
GATCGCCACTGCTTGGAGCGCAGTGGGTCTAGTAAGTATCGTGAAGGTTC
AAAGGCAGAAGAACATGGAAAAATATGACCCCTTTGTCTAG
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Coding sequence (CDS) from alignment at tig00000027_pilon:792160..793600+

>Ggra1035.t1 ID=Ggra1035.t1|Name=Ggra1035.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1362bp|location=Sequence derived from alignment at tig00000027_pilon:792160..793600+ (Gracilaria gracilis GNS1m male)
ATGACTCCCACTACTCAGCATGTGCCGCCTTCTCTGTTGTCATTCTGGCA
TCCGGCCCTAGCAGTGCTCATTCTCTTTCTCGCGGGCTCTACGTTTTCAC
TCGGCGTTTTCATCCCACAGGTTGAGGCCTTCGCCGAACCAGCCCACCAC
CTGGACGGAGTATGGGAGACGGCTATGGGCGCGATGCACTTTCTTTCCGC
TCCAATCATGATTGTAGCTGGAATATACCTCGACGCTGGACAGATTCAAT
GCCACTCTGATCTCCAACTCAACCAATTTGCCACCAAAACCTTTCGTCTC
CGCCTACTCAACATAGTCTCAACATTTGCGTTCGCGTCGTTGGCTCTCTC
TGCGCATGGCGTGGCGAACTCCAATCGCTTCACGTTATTCATCGGTGTCG
CTCTACAAGCCTTTCCTCTTGGCCTTCTCTATCTAACTTGTATACAGGCC
CTGCTAGCATGGGTTCCGAAGCACGCGGGTATAGCCGTGGGAGTTGGCCA
TGTCGCATTCGGGCTAGGGACGGTCGGCCTAACGCAACTGTTCAGTGTTC
TCATTAGTCTATGGGGCCCAGTTACTGCCATTTACGCTTCCTCCGTCATA
CTTGCGACAGCTGGTTTCCTACCATCCTTTCTGCTCAAGTGGCCTTCTCG
GGACGGCGAATCTCACGAAGAGCAGGATCCGTTGCTGCAACACTTTGAAG
ATGTTGAAAGGATCCCATGGCGCAATCTTGTCTACTTGCCCAACTTTTGG
CTCTATATTGTAGCTGTGTTTACCACCAGTTCCTCTTACATGTTGAACCC
GTATTATTTCAAGCTCGGGCACCTGTTCAACAGGCCCTTCGACCAATTAG
TGCTTCTTTTCAATCTGGCGAATATCGCCTCAACTATTGCCAGTCTGTTT
GGCACCGCTCTTACGGATGTGGTTGGGTTCGGCAAAGGATTGTTCTTCTC
TGGATCGAAGAACATCATGACTTTTTTGATGGCATTGCAGACTGTATGTT
TTTTTCTTTCCATCATTATCAACAATACTCTCAACTTTGCTGGCTTTGTG
ATTATTAAGACTCTGCTGAAGATTATCGTTACTTGTCATGTGGGATGCTC
AGCCCTCCTCGCCAGAGATCTCTTCGGCTCGAAAAATAGTTGTGTGGTGT
TTGGGTTTGGTGCCGGGCTTGCGCTCGGCTGCGGAGAAGCATTTTCTGCA
TGGCTCATGGCAGCGGTTGAACTTGCCGTGGGACCCGCATCAGTGCCGTC
GAACTACAACCCTTTTTACTGGATCGCCACTGCTTGGAGCGCAGTGGGTC
TAGTAAGTATCGTGAAGGTTCAAAGGCAGAAGAACATGGAAAAATATGAC
CCCTTTGTCTAG
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