Ggra10349.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10349.t1
Unique NameGgra10349.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1596941..1599240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1433126.BN938_1275
PFAMsGlyco_hydro_16
Max annot lvl976|Bacteroidetes
Evalue4.1e-09
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria,4NVAB@976|Bacteroidetes,2FV4Z@200643|Bacteroidia
DescriptionGlycosyl hydrolases family 16
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10349Ggra10349Gracilaria gracilis GNS1m malegenetig00000016_pilon 1596941..1599240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10349.t1Ggra10349.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1596941..1599240 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10349.t1.stop1Ggra10349.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1596941..1596943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10349.t1.CDS1Ggra10349.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1596941..1597628 -
Ggra10349.t1.CDS2Ggra10349.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1597686..1597762 -
Ggra10349.t1.CDS3Ggra10349.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1598689..1598744 -
Ggra10349.t1.CDS4Ggra10349.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1598793..1599240 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10349.t1.exon1Ggra10349.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1596941..1597628 -
Ggra10349.t1.exon2Ggra10349.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 1597686..1597762 -
Ggra10349.t1.exon3Ggra10349.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 1598689..1598744 -
Ggra10349.t1.exon4Ggra10349.t1.exon4Gracilaria gracilis GNS1m maleexontig00000016_pilon 1598793..1599240 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10349.t1.intron1Ggra10349.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1597629..1597685 -
Ggra10349.t1.intron2Ggra10349.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1597763..1598688 -
Ggra10349.t1.intron3Ggra10349.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1598745..1598792 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10349.t1.start1Ggra10349.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1599238..1599240 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10349.t1 ID=Ggra10349.t1|Name=Ggra10349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp
MKLVFSLFALVIAVATAIPVSHILNRFGSFSPFLESNSGFVSTPTTPGTG
DNPTIVEPAVPSGTTTVSATAIGTGGEGGEGGDASAQGVSASAGIGGDGG
GGIGGDGIFIGSIGSGASGNVFADNGGSASLTGVFANIANAGPGGNGGPD
VRFAYNDTLTGDRSDRQDEVVGNMKWVKDWNMSDEFDAYQTNNCFFSQDN
VYVRNNCLRLQSEERGPSADDRRKIGRRLDGSSWKYATRFIPSAEKRTYG
YYEIACKLMDCNVSCAFWFIEDRDTEIDVFEYSTSGKNYDIYDKSRLPFR
NKFNMNTIVYSGANREHERSHPLKINVGRNLSKEIIKVGFLWKPDVLVSY
LNDWEVRRLSNHDFHKPLYLQLDSGILERVWRTRRVWTEEATKKKKLLAG
VLRPKLSNSKEVEWIDVFVIDQ*
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spliced messenger RNA

>Ggra10349.t1 ID=Ggra10349.t1|Name=Ggra10349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000016_pilon:1596941..1599240- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCGTATTCTCCCTTTTCGCTCTTGTCATCGCCGTCGCAACCGC
GATCCCAGTCTCACATATACTTAACCGCTTTGGTTCTTTCTCTCCATTTT
TGGAAAGTAACTCCGGCTTTGTCAGTACACCAACGACTCCAGGAACTGGG
GACAACCCAACCATCGTTGAACCTGCCGTCCCTTCAGGGACAACAACAGT
CAGCGCCACTGCAATTGGTACCGGAGGCGAAGGAGGCGAGGGAGGAGATG
CATCCGCTCAGGGCGTCTCCGCTTCAGCTGGAATCGGGGGCGACGGTGGC
GGAGGCATAGGAGGGGATGGAATATTCATCGGCTCCATTGGGTCTGGGGC
TTCTGGTAATGTGTTTGCGGATAATGGGGGAAGTGCTAGTCTCACAGGTG
TGTTTGCAAACATTGCAAACGCAGGGCCTGGTGGAAATGGGGGACCTGAC
GTTCGATTCGCCTATAACGACACGCTTACAGGAGACCGATCGGATCGGCA
GGACGAGGTTGTGGGCAACATGAAGTGGGTCAAGGATTGGAACATGTCGG
ATGAATTCGATGCTTATCAGACCAACAACTGTTTCTTCTCACAAGACAAC
GTGTACGTGCGTAACAATTGTCTTCGGCTGCAGTCCGAGGAGAGGGGACC
ATCGGCCGACGATCGCCGGAAGATAGGACGTCGTCTCGACGGAAGCAGTT
GGAAGTACGCCACCCGTTTCATCCCTAGCGCCGAGAAACGCACCTACGGT
TACTATGAGATTGCGTGCAAGCTCATGGACTGCAACGTCAGTTGCGCATT
CTGGTTTATCGAGGACCGTGACACTGAGATTGATGTGTTCGAGTACTCCA
CCTCAGGTAAGAACTATGACATATACGACAAATCCCGCCTACCGTTCAGA
AACAAGTTCAACATGAACACCATTGTGTACTCGGGAGCCAACAGAGAACA
CGAGCGATCGCATCCACTGAAGATCAACGTGGGACGCAATTTGAGCAAAG
AAATCATCAAAGTTGGGTTCTTGTGGAAGCCTGATGTGCTGGTGTCGTAC
TTGAATGACTGGGAAGTACGTCGTTTGTCCAACCATGACTTCCACAAGCC
GTTGTACTTACAACTGGACTCAGGAATTCTCGAACGGGTTTGGAGAACCA
GAAGAGTATGGACCGAAGAAGCTACCAAAAAAAAAAAACTCTTGGCAGGT
GTTTTACGTCCGAAGCTATCAAATAGCAAGGAGGTAGAGTGGATCGATGT
GTTTGTTATTGATCAATGA
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protein sequence of Ggra10349.t1

>Ggra10349.t1 ID=Ggra10349.t1|Name=Ggra10349.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=423bp
MKLVFSLFALVIAVATAIPVSHILNRFGSFSPFLESNSGFVSTPTTPGTG
DNPTIVEPAVPSGTTTVSATAIGTGGEGGEGGDASAQGVSASAGIGGDGG
GGIGGDGIFIGSIGSGASGNVFADNGGSASLTGVFANIANAGPGGNGGPD
VRFAYNDTLTGDRSDRQDEVVGNMKWVKDWNMSDEFDAYQTNNCFFSQDN
VYVRNNCLRLQSEERGPSADDRRKIGRRLDGSSWKYATRFIPSAEKRTYG
YYEIACKLMDCNVSCAFWFIEDRDTEIDVFEYSTSGKNYDIYDKSRLPFR
NKFNMNTIVYSGANREHERSHPLKINVGRNLSKEIIKVGFLWKPDVLVSY
LNDWEVRRLSNHDFHKPLYLQLDSGILERVWRTRRVWTEEATKKKKLLAG
VLRPKLSNSKEVEWIDVFVIDQ*
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mRNA from alignment at tig00000016_pilon:1596941..1599240-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10349.t1 ID=Ggra10349.t1|Name=Ggra10349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2300bp|location=Sequence derived from alignment at tig00000016_pilon:1596941..1599240- (Gracilaria gracilis GNS1m male)
ATGAAGCTCGTATTCTCCCTTTTCGCTCTTGTCATCGCCGTCGCAACCGC
GATCCCAGTCTCACATATACTTAACCGCTTTGGTTCTTTCTCTCCATTTT
TGGAAAGTAACTCCGGCTTTGTCAGTACACCAACGACTCCAGGAACTGGG
GACAACCCAACCATCGTTGAACCTGCCGTCCCTTCAGGGACAACAACAGT
CAGCGCCACTGCAATTGGTACCGGAGGCGAAGGAGGCGAGGGAGGAGATG
CATCCGCTCAGGGCGTCTCCGCTTCAGCTGGAATCGGGGGCGACGGTGGC
GGAGGCATAGGAGGGGATGGAATATTCATCGGCTCCATTGGGTCTGGGGC
TTCTGGTAATGTGTTTGCGGATAATGGGGGAAGTGCTAGTCTCACAGGTG
TGTTTGCAAACATTGCAAACGCAGGGCCTGGTGGAAATGGGGGACCTGGT
ATTGCAACGGCGACGTCTACAGCTTGACTTTTTCTTATTCGCACAGACGT
TCGATTCGCCTATAACGACACGCTTACAGGAGACCGATCGGATCGGCAGG
ACGTAAGTAGTTTAGGAATCGAAAGCAACATCAACTGTGCATTGAAGAAA
GTGGTCGCCGGCGGCGGCGCGTAGATCTGCGTTTCCGCACAACCGTTTCC
AATGAACTTTCGTCTTCGTTCTTCGTTCCTTGAAATGCCAGGACTTAGTA
TTGAACTATCATACCCTTGGTACACGAAATTTGTAACAGCAGAACATGAG
TATCTTACGCCTTTTGCAACAAAATCGCTGCAAAATTTTGCATAGTTGAT
TCGTTCGACCGAGCATTTTGTTTCTTGCAATTCATCCTAAATCCTGCTCT
TTGGCAATTGCGCATAACCCCATGACAGAAAGGTGACAATCTTTGTCACC
TTCTGAACCAGGGTGCAATTTGGTGCATAAGGTGAAAGTGCCCCTTCAAA
GGTGCAATCACCATCCAAAGGTGACGGTGACGTGTCACCTTGCAAAGTTG
AAATGTTTCGCACTATACGAAAGTTTACAGTATGATTGGCAAAGATGGGT
TTGCATGACTACCATTACAGCAGATGTAATGAAGATTTTAGTATGACAGT
GTAAGGAGAGCGCATAAAAAACGACTAACAGTGTAAAAAGAGCTTTGCAA
GGTGACAAAGGTGCTAAACAAGGTGAAGTCACCTTTGGATGGTGAACATT
GCACCTTTGAAGTGCACTTTCACCTTATGCACCAAATTGCACCTTGGTTC
AGAAGGTGGCAAAAATTGTCACCTTTCTGTCATGGGGATAAGAAGCTCAC
CCTCAAACACTTCAAGTCAAAGCTCAACTCGCTTCTTTCCATTTCACAAC
CAAACCACTCATCACAATCCCGTATCTTTTCACTTGCCAAAAATGACTGT
GTACAAACATGTTCCAGCTCTCCACTACAATCCCTCCAAAACTCGCCACG
ATACCACTCTTCCCTACTATTCCAACAGGAGGTTGTGGGCAACATGAAGT
GGGTCAAGGATTGGAACATGTCGGATGAATTCGATGCTTATCAGACCAAC
AACTGGTATTACAACAACAAATAGGTGCGGTACAATTCGCTGTGCCAAGG
ACGCTACCCCAGTTTCTTCTCACAAGACAACGTGTACGTGCGTAACAATT
GTCTTCGGCTGCAGTCCGAGGAGAGGGGACCATCGGCCGACGATCGCCGG
AAGATAGGACGTCGTCTCGACGGAAGCAGTTGGAAGTACGCCACCCGTTT
CATCCCTAGCGCCGAGAAACGCACCTACGGTTACTATGAGATTGCGTGCA
AGCTCATGGACTGCAACGTCAGTTGCGCATTCTGGTTTATCGAGGACCGT
GACACTGAGATTGATGTGTTCGAGTACTCCACCTCAGGTAAGAACTATGA
CATATACGACAAATCCCGCCTACCGTTCAGAAACAAGTTCAACATGAACA
CCATTGTGTACTCGGGAGCCAACAGAGAACACGAGCGATCGCATCCACTG
AAGATCAACGTGGGACGCAATTTGAGCAAAGAAATCATCAAAGTTGGGTT
CTTGTGGAAGCCTGATGTGCTGGTGTCGTACTTGAATGACTGGGAAGTAC
GTCGTTTGTCCAACCATGACTTCCACAAGCCGTTGTACTTACAACTGGAC
TCAGGAATTCTCGAACGGGTTTGGAGAACCAGAAGAGTATGGACCGAAGA
AGCTACCAAAAAAAAAAAACTCTTGGCAGGTGTTTTACGTCCGAAGCTAT
CAAATAGCAAGGAGGTAGAGTGGATCGATGTGTTTGTTATTGATCAATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1596941..1599240-

>Ggra10349.t1 ID=Ggra10349.t1|Name=Ggra10349.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000016_pilon:1596941..1599240- (Gracilaria gracilis GNS1m male)
ATGAAGCTCGTATTCTCCCTTTTCGCTCTTGTCATCGCCGTCGCAACCGC
GATCCCAGTCTCACATATACTTAACCGCTTTGGTTCTTTCTCTCCATTTT
TGGAAAGTAACTCCGGCTTTGTCAGTACACCAACGACTCCAGGAACTGGG
GACAACCCAACCATCGTTGAACCTGCCGTCCCTTCAGGGACAACAACAGT
CAGCGCCACTGCAATTGGTACCGGAGGCGAAGGAGGCGAGGGAGGAGATG
CATCCGCTCAGGGCGTCTCCGCTTCAGCTGGAATCGGGGGCGACGGTGGC
GGAGGCATAGGAGGGGATGGAATATTCATCGGCTCCATTGGGTCTGGGGC
TTCTGGTAATGTGTTTGCGGATAATGGGGGAAGTGCTAGTCTCACAGGTG
TGTTTGCAAACATTGCAAACGCAGGGCCTGGTGGAAATGGGGGACCTGAC
GTTCGATTCGCCTATAACGACACGCTTACAGGAGACCGATCGGATCGGCA
GGACGAGGTTGTGGGCAACATGAAGTGGGTCAAGGATTGGAACATGTCGG
ATGAATTCGATGCTTATCAGACCAACAACTGTTTCTTCTCACAAGACAAC
GTGTACGTGCGTAACAATTGTCTTCGGCTGCAGTCCGAGGAGAGGGGACC
ATCGGCCGACGATCGCCGGAAGATAGGACGTCGTCTCGACGGAAGCAGTT
GGAAGTACGCCACCCGTTTCATCCCTAGCGCCGAGAAACGCACCTACGGT
TACTATGAGATTGCGTGCAAGCTCATGGACTGCAACGTCAGTTGCGCATT
CTGGTTTATCGAGGACCGTGACACTGAGATTGATGTGTTCGAGTACTCCA
CCTCAGGTAAGAACTATGACATATACGACAAATCCCGCCTACCGTTCAGA
AACAAGTTCAACATGAACACCATTGTGTACTCGGGAGCCAACAGAGAACA
CGAGCGATCGCATCCACTGAAGATCAACGTGGGACGCAATTTGAGCAAAG
AAATCATCAAAGTTGGGTTCTTGTGGAAGCCTGATGTGCTGGTGTCGTAC
TTGAATGACTGGGAAGTACGTCGTTTGTCCAACCATGACTTCCACAAGCC
GTTGTACTTACAACTGGACTCAGGAATTCTCGAACGGGTTTGGAGAACCA
GAAGAGTATGGACCGAAGAAGCTACCAAAAAAAAAAAACTCTTGGCAGGT
GTTTTACGTCCGAAGCTATCAAATAGCAAGGAGGTAGAGTGGATCGATGT
GTTTGTTATTGATCAATGA
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