Ggra10347.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10347.t1
Unique NameGgra10347.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length532
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1587640..1589235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123060.JONP01000002_gene930
PFAMsGMC_oxred_C,GMC_oxred_N
Max annot lvl204441|Rhodospirillales
Evalue7.85e-40
EggNOG OGsCOG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,2JVAC@204441|Rhodospirillales
DescriptionGMC oxidoreductase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10347Ggra10347Gracilaria gracilis GNS1m malegenetig00000016_pilon 1587640..1589235 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10347.t1.stop1Ggra10347.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1587640..1587642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10347.t1.CDS1Ggra10347.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1587640..1589235 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10347.t1.exon1Ggra10347.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1587640..1589235 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10347.t1.start1Ggra10347.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1589233..1589235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10347.t1Ggra10347.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1587640..1589235 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10347.t1 ID=Ggra10347.t1|Name=Ggra10347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=532bp
MSSSGVLYCALLVLFLPHVLADSFTDFLVVGGGTSGCILAARLCTAFPNL
QVTLLERGLPRSPQSDFLVAAPRNLYQTWSDRSITEFFESLPDEGLGGRV
TPTLTGTTLGGSSAINGMQWTVPTAGSIEEWRISGLNTATAAAYFRRAYD
AVGFAPPQSPLQYADDYVSAGLRAGFLSSDDPISQPPTSVWQNRLAVDSS
FRRNDACSAYVSPAQNGACAQNLLVMQAETADTIIMEDVQGGGKRAVGVE
TISSANRMTRTRVWARKEVICAAGPYGSPTLLQRSGIGSSTTLAAAGVAQ
KVNLPVGERSVTRASAGVSSTFTGVPDEAANNIEAVESAQQRAIWEAGNG
GLLGTPVTAANGRTGDDGYFTVTLVPFVPGSPELRTGCYHNTNQTGFVRI
RDANAFSTPLLKNNLLSDAGDVQRLVRCLRQAARIHQSFPVRFGMRLTAP
VNGVVDEGFVRQTANTGAHIVGGCRVGSVLTGDLKVKGVDGLRVVDASAI
PQMPRSAGPAASVYMLAEFMSDQIIGEHGGM*
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spliced messenger RNA

>Ggra10347.t1 ID=Ggra10347.t1|Name=Ggra10347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000016_pilon:1587640..1589235- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTTCAGGTGTTCTCTACTGCGCCTTGCTTGTGCTTTTCCTTCC
GCACGTGCTGGCGGATAGCTTCACAGACTTTCTCGTCGTGGGCGGTGGCA
CTTCGGGTTGCATTCTCGCAGCACGTCTCTGCACCGCGTTTCCAAACCTG
CAAGTCACCCTGCTAGAACGCGGCTTGCCCCGCTCGCCCCAATCCGATTT
CCTTGTCGCCGCTCCTCGAAACCTCTACCAAACCTGGTCAGACCGTTCAA
TCACCGAGTTTTTCGAATCGCTGCCCGATGAGGGGCTTGGCGGAAGGGTG
ACGCCCACTTTGACTGGTACCACGCTCGGCGGCTCATCCGCTATCAATGG
CATGCAATGGACGGTGCCCACCGCAGGCTCAATCGAAGAATGGCGCATTT
CTGGGCTTAACACTGCCACGGCCGCTGCGTACTTTCGTCGCGCGTACGAC
GCCGTTGGGTTTGCGCCGCCACAATCGCCGCTGCAGTACGCTGATGACTA
CGTGAGCGCCGGCTTACGGGCTGGTTTCCTTTCGTCCGATGATCCAATCT
CGCAGCCGCCAACCTCTGTATGGCAGAATCGTTTAGCAGTCGATTCTAGC
TTCCGTCGCAATGATGCGTGTAGTGCGTACGTATCTCCGGCTCAAAACGG
AGCTTGTGCGCAGAATCTGTTGGTGATGCAAGCAGAGACGGCGGACACGA
TCATCATGGAGGACGTCCAAGGCGGAGGGAAACGAGCCGTAGGCGTGGAA
ACGATCTCAAGCGCAAATCGTATGACGAGAACTCGTGTGTGGGCGAGAAA
GGAAGTGATCTGCGCTGCCGGGCCGTATGGATCTCCTACGTTGCTACAGC
GGTCTGGGATTGGAAGCAGTACAACTTTGGCTGCTGCTGGCGTGGCGCAG
AAGGTTAACTTGCCCGTTGGGGAACGCTCGGTGACGCGGGCGAGTGCCGG
CGTTTCTTCTACTTTCACAGGAGTGCCCGACGAAGCTGCCAACAACATTG
AGGCGGTTGAAAGCGCGCAGCAGCGCGCAATATGGGAAGCAGGAAACGGG
GGCCTACTGGGCACGCCTGTTACGGCGGCGAATGGCAGAACGGGTGACGA
TGGTTACTTCACGGTCACTCTGGTTCCGTTCGTGCCAGGTTCGCCAGAAC
TGAGGACAGGGTGTTATCATAACACCAACCAAACGGGCTTTGTTCGGATT
CGTGACGCGAATGCGTTCAGCACACCGCTGCTGAAGAACAATCTGCTGAG
CGATGCGGGCGACGTGCAAAGGTTGGTACGCTGTCTACGACAAGCGGCTC
GGATTCACCAGAGCTTCCCGGTACGGTTTGGTATGAGACTGACGGCGCCC
GTAAACGGTGTGGTGGATGAAGGGTTCGTGCGACAGACGGCAAACACAGG
CGCTCATATTGTGGGTGGGTGCCGCGTGGGAAGTGTGTTGACTGGTGACT
TGAAGGTGAAGGGGGTGGACGGATTGAGAGTTGTTGATGCTTCGGCAATT
CCGCAAATGCCTCGGTCGGCTGGGCCTGCTGCGTCAGTGTACATGTTGGC
CGAATTCATGTCGGACCAAATCATTGGCGAACACGGTGGTATGTGA
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protein sequence of Ggra10347.t1

>Ggra10347.t1 ID=Ggra10347.t1|Name=Ggra10347.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=532bp
MSSSGVLYCALLVLFLPHVLADSFTDFLVVGGGTSGCILAARLCTAFPNL
QVTLLERGLPRSPQSDFLVAAPRNLYQTWSDRSITEFFESLPDEGLGGRV
TPTLTGTTLGGSSAINGMQWTVPTAGSIEEWRISGLNTATAAAYFRRAYD
AVGFAPPQSPLQYADDYVSAGLRAGFLSSDDPISQPPTSVWQNRLAVDSS
FRRNDACSAYVSPAQNGACAQNLLVMQAETADTIIMEDVQGGGKRAVGVE
TISSANRMTRTRVWARKEVICAAGPYGSPTLLQRSGIGSSTTLAAAGVAQ
KVNLPVGERSVTRASAGVSSTFTGVPDEAANNIEAVESAQQRAIWEAGNG
GLLGTPVTAANGRTGDDGYFTVTLVPFVPGSPELRTGCYHNTNQTGFVRI
RDANAFSTPLLKNNLLSDAGDVQRLVRCLRQAARIHQSFPVRFGMRLTAP
VNGVVDEGFVRQTANTGAHIVGGCRVGSVLTGDLKVKGVDGLRVVDASAI
PQMPRSAGPAASVYMLAEFMSDQIIGEHGGM*
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mRNA from alignment at tig00000016_pilon:1587640..1589235-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10347.t1 ID=Ggra10347.t1|Name=Ggra10347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000016_pilon:1587640..1589235- (Gracilaria gracilis GNS1m male)
ATGTCGTCTTCAGGTGTTCTCTACTGCGCCTTGCTTGTGCTTTTCCTTCC
GCACGTGCTGGCGGATAGCTTCACAGACTTTCTCGTCGTGGGCGGTGGCA
CTTCGGGTTGCATTCTCGCAGCACGTCTCTGCACCGCGTTTCCAAACCTG
CAAGTCACCCTGCTAGAACGCGGCTTGCCCCGCTCGCCCCAATCCGATTT
CCTTGTCGCCGCTCCTCGAAACCTCTACCAAACCTGGTCAGACCGTTCAA
TCACCGAGTTTTTCGAATCGCTGCCCGATGAGGGGCTTGGCGGAAGGGTG
ACGCCCACTTTGACTGGTACCACGCTCGGCGGCTCATCCGCTATCAATGG
CATGCAATGGACGGTGCCCACCGCAGGCTCAATCGAAGAATGGCGCATTT
CTGGGCTTAACACTGCCACGGCCGCTGCGTACTTTCGTCGCGCGTACGAC
GCCGTTGGGTTTGCGCCGCCACAATCGCCGCTGCAGTACGCTGATGACTA
CGTGAGCGCCGGCTTACGGGCTGGTTTCCTTTCGTCCGATGATCCAATCT
CGCAGCCGCCAACCTCTGTATGGCAGAATCGTTTAGCAGTCGATTCTAGC
TTCCGTCGCAATGATGCGTGTAGTGCGTACGTATCTCCGGCTCAAAACGG
AGCTTGTGCGCAGAATCTGTTGGTGATGCAAGCAGAGACGGCGGACACGA
TCATCATGGAGGACGTCCAAGGCGGAGGGAAACGAGCCGTAGGCGTGGAA
ACGATCTCAAGCGCAAATCGTATGACGAGAACTCGTGTGTGGGCGAGAAA
GGAAGTGATCTGCGCTGCCGGGCCGTATGGATCTCCTACGTTGCTACAGC
GGTCTGGGATTGGAAGCAGTACAACTTTGGCTGCTGCTGGCGTGGCGCAG
AAGGTTAACTTGCCCGTTGGGGAACGCTCGGTGACGCGGGCGAGTGCCGG
CGTTTCTTCTACTTTCACAGGAGTGCCCGACGAAGCTGCCAACAACATTG
AGGCGGTTGAAAGCGCGCAGCAGCGCGCAATATGGGAAGCAGGAAACGGG
GGCCTACTGGGCACGCCTGTTACGGCGGCGAATGGCAGAACGGGTGACGA
TGGTTACTTCACGGTCACTCTGGTTCCGTTCGTGCCAGGTTCGCCAGAAC
TGAGGACAGGGTGTTATCATAACACCAACCAAACGGGCTTTGTTCGGATT
CGTGACGCGAATGCGTTCAGCACACCGCTGCTGAAGAACAATCTGCTGAG
CGATGCGGGCGACGTGCAAAGGTTGGTACGCTGTCTACGACAAGCGGCTC
GGATTCACCAGAGCTTCCCGGTACGGTTTGGTATGAGACTGACGGCGCCC
GTAAACGGTGTGGTGGATGAAGGGTTCGTGCGACAGACGGCAAACACAGG
CGCTCATATTGTGGGTGGGTGCCGCGTGGGAAGTGTGTTGACTGGTGACT
TGAAGGTGAAGGGGGTGGACGGATTGAGAGTTGTTGATGCTTCGGCAATT
CCGCAAATGCCTCGGTCGGCTGGGCCTGCTGCGTCAGTGTACATGTTGGC
CGAATTCATGTCGGACCAAATCATTGGCGAACACGGTGGTATGTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1587640..1589235-

>Ggra10347.t1 ID=Ggra10347.t1|Name=Ggra10347.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000016_pilon:1587640..1589235- (Gracilaria gracilis GNS1m male)
ATGTCGTCTTCAGGTGTTCTCTACTGCGCCTTGCTTGTGCTTTTCCTTCC
GCACGTGCTGGCGGATAGCTTCACAGACTTTCTCGTCGTGGGCGGTGGCA
CTTCGGGTTGCATTCTCGCAGCACGTCTCTGCACCGCGTTTCCAAACCTG
CAAGTCACCCTGCTAGAACGCGGCTTGCCCCGCTCGCCCCAATCCGATTT
CCTTGTCGCCGCTCCTCGAAACCTCTACCAAACCTGGTCAGACCGTTCAA
TCACCGAGTTTTTCGAATCGCTGCCCGATGAGGGGCTTGGCGGAAGGGTG
ACGCCCACTTTGACTGGTACCACGCTCGGCGGCTCATCCGCTATCAATGG
CATGCAATGGACGGTGCCCACCGCAGGCTCAATCGAAGAATGGCGCATTT
CTGGGCTTAACACTGCCACGGCCGCTGCGTACTTTCGTCGCGCGTACGAC
GCCGTTGGGTTTGCGCCGCCACAATCGCCGCTGCAGTACGCTGATGACTA
CGTGAGCGCCGGCTTACGGGCTGGTTTCCTTTCGTCCGATGATCCAATCT
CGCAGCCGCCAACCTCTGTATGGCAGAATCGTTTAGCAGTCGATTCTAGC
TTCCGTCGCAATGATGCGTGTAGTGCGTACGTATCTCCGGCTCAAAACGG
AGCTTGTGCGCAGAATCTGTTGGTGATGCAAGCAGAGACGGCGGACACGA
TCATCATGGAGGACGTCCAAGGCGGAGGGAAACGAGCCGTAGGCGTGGAA
ACGATCTCAAGCGCAAATCGTATGACGAGAACTCGTGTGTGGGCGAGAAA
GGAAGTGATCTGCGCTGCCGGGCCGTATGGATCTCCTACGTTGCTACAGC
GGTCTGGGATTGGAAGCAGTACAACTTTGGCTGCTGCTGGCGTGGCGCAG
AAGGTTAACTTGCCCGTTGGGGAACGCTCGGTGACGCGGGCGAGTGCCGG
CGTTTCTTCTACTTTCACAGGAGTGCCCGACGAAGCTGCCAACAACATTG
AGGCGGTTGAAAGCGCGCAGCAGCGCGCAATATGGGAAGCAGGAAACGGG
GGCCTACTGGGCACGCCTGTTACGGCGGCGAATGGCAGAACGGGTGACGA
TGGTTACTTCACGGTCACTCTGGTTCCGTTCGTGCCAGGTTCGCCAGAAC
TGAGGACAGGGTGTTATCATAACACCAACCAAACGGGCTTTGTTCGGATT
CGTGACGCGAATGCGTTCAGCACACCGCTGCTGAAGAACAATCTGCTGAG
CGATGCGGGCGACGTGCAAAGGTTGGTACGCTGTCTACGACAAGCGGCTC
GGATTCACCAGAGCTTCCCGGTACGGTTTGGTATGAGACTGACGGCGCCC
GTAAACGGTGTGGTGGATGAAGGGTTCGTGCGACAGACGGCAAACACAGG
CGCTCATATTGTGGGTGGGTGCCGCGTGGGAAGTGTGTTGACTGGTGACT
TGAAGGTGAAGGGGGTGGACGGATTGAGAGTTGTTGATGCTTCGGCAATT
CCGCAAATGCCTCGGTCGGCTGGGCCTGCTGCGTCAGTGTACATGTTGGC
CGAATTCATGTCGGACCAAATCATTGGCGAACACGGTGGTATGTGA
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