Ggra10346.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10346.t1
Unique NameGgra10346.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length542
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1585088..1586713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1185652.USDA257_c10950
Preferred nameMA20_01285
PFAMsGMC_oxred_C,GMC_oxred_N
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00087
KEGG koko:K00108
KEGG ReactionR01025
KEGG Pathwayko00260,ko01100,map00260,map01100
KEGG ModuleM00555
Evalue1.95e-30
EggNOG OGsCOG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,4B7MC@82115|Rhizobiaceae
EC1.1.99.1
DescriptionBelongs to the GMC oxidoreductase family
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10346Ggra10346Gracilaria gracilis GNS1m malegenetig00000016_pilon 1585088..1586713 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10346.t1.stop1Ggra10346.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1585088..1585090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10346.t1.CDS1Ggra10346.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1585088..1586713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10346.t1.exon1Ggra10346.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1585088..1586713 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10346.t1.start1Ggra10346.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1586711..1586713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10346.t1Ggra10346.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1585088..1586713 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10346.t1 ID=Ggra10346.t1|Name=Ggra10346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=542bp
MASRAATVALCVAALAFVAAAQPAADFLIVGGGTAGCVLAAKLCTAFPNQ
RVVVIERGLARSAQADFLVHAPRNLFSVLSERSVAELIPSLPDVGLNSRG
VDAVTGATLGGSTAINGMQWTVPLPGTVEQWGVPGLTTAVADAYFRAVYD
KVGFGPPQNPLQYADDYVQAGVNAGFAQSQDPFQQPLRSIWQTRLSITDS
FRRNDACSAYLLPLLDTQCAQNVHLMQGLTVSNIVFERNTNGTTPTQPPS
LKAVAVDTIPSPGSSQSAQRIFASREILITAGPYNSPKLLQLSGIGLKFV
LDAAGVPQVLNLPVGEATICRASGTIPSTYTGVPDEPANNQTLVNSPQAR
QQWEAGLGGILGTPVSAANGVAGTDAYFGSTLVPFVPGAPEVRSACYHNT
ETTGYLRIRDSNPFSTPLVKYNLLSSAADVQRLTNCLKDMANVHRQFPAR
FGMSFMYPPNGDVTEGFVRSVAQWGAHFVGGCPVGDVLAGDFTVKGTSDL
RVIDASAIRTMPVSAGPMASVYMLAELMGDRLIEQYSANLS*
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spliced messenger RNA

>Ggra10346.t1 ID=Ggra10346.t1|Name=Ggra10346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00000016_pilon:1585088..1586713- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGCGCGCCGCCACCGTCGCGCTCTGCGTCGCCGCGCTGGCGTT
CGTCGCGGCCGCGCAGCCGGCCGCCGACTTCCTCATCGTGGGCGGCGGCA
CGGCGGGCTGCGTGCTGGCCGCCAAGCTATGCACGGCGTTTCCCAACCAG
CGCGTGGTGGTGATCGAGCGCGGGCTGGCGCGCTCCGCGCAGGCCGACTT
CCTGGTGCACGCGCCGCGCAACCTGTTCTCCGTGCTGTCGGAGCGCTCGG
TGGCCGAGCTCATCCCGTCGCTGCCGGACGTCGGGCTCAACTCGCGGGGC
GTCGACGCCGTCACCGGCGCCACGCTCGGCGGCTCCACCGCCATCAACGG
CATGCAGTGGACTGTGCCGCTGCCGGGCACCGTGGAGCAGTGGGGCGTGC
CCGGCCTCACCACTGCCGTGGCTGACGCTTACTTCCGCGCCGTCTACGAC
AAAGTCGGCTTTGGGCCGCCTCAAAACCCACTTCAGTACGCCGATGACTA
CGTGCAGGCGGGCGTCAACGCCGGCTTTGCCCAAAGTCAAGATCCGTTCC
AGCAGCCGTTGCGTTCCATTTGGCAGACCCGCCTCTCCATCACTGATTCC
TTCCGTCGAAACGACGCGTGTTCGGCGTACCTGCTCCCGCTTCTCGACAC
GCAATGTGCGCAGAACGTCCACTTGATGCAAGGTCTTACCGTGTCAAACA
TCGTCTTCGAGCGCAACACCAACGGCACCACGCCCACGCAGCCGCCCTCT
CTGAAGGCGGTTGCCGTCGATACCATCCCGTCGCCGGGCAGCTCGCAATC
GGCTCAACGTATCTTTGCGTCAAGAGAAATCCTCATCACGGCCGGTCCGT
ACAATTCTCCAAAGCTTCTGCAACTGTCTGGAATTGGCTTAAAGTTCGTG
TTGGACGCAGCCGGCGTTCCTCAAGTGCTCAATTTGCCTGTCGGGGAGGC
AACCATCTGTCGTGCCTCTGGCACCATTCCTTCGACGTACACGGGTGTTC
CGGATGAGCCTGCCAACAATCAGACGCTGGTAAACTCTCCCCAAGCGCGC
CAACAGTGGGAAGCTGGGCTTGGAGGTATTCTTGGTACGCCCGTCTCTGC
GGCCAACGGTGTGGCGGGTACGGACGCGTACTTTGGCTCTACGCTTGTGC
CGTTTGTTCCGGGCGCGCCTGAGGTTCGTTCCGCATGCTACCACAACACT
GAGACCACAGGTTACCTGCGCATTCGCGATTCGAATCCTTTCAGCACGCC
GTTGGTCAAGTACAACCTGCTCTCGTCGGCAGCAGACGTGCAAAGGCTGA
CAAACTGTCTGAAGGACATGGCGAATGTGCACCGTCAGTTCCCCGCGCGG
TTTGGTATGTCGTTCATGTACCCGCCGAACGGGGATGTGACGGAGGGATT
CGTGCGAAGTGTGGCGCAGTGGGGGGCTCATTTTGTGGGCGGATGTCCCG
TCGGAGACGTTCTGGCGGGCGACTTTACGGTGAAGGGTACGAGTGATCTG
AGGGTGATTGATGCGTCGGCGATCCGTACGATGCCTGTGTCTGCCGGTCC
TATGGCCTCTGTGTACATGTTGGCCGAGTTGATGGGGGACAGGCTTATCG
AACAATACTCTGCGAACTTGAGCTGA
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protein sequence of Ggra10346.t1

>Ggra10346.t1 ID=Ggra10346.t1|Name=Ggra10346.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=542bp
MASRAATVALCVAALAFVAAAQPAADFLIVGGGTAGCVLAAKLCTAFPNQ
RVVVIERGLARSAQADFLVHAPRNLFSVLSERSVAELIPSLPDVGLNSRG
VDAVTGATLGGSTAINGMQWTVPLPGTVEQWGVPGLTTAVADAYFRAVYD
KVGFGPPQNPLQYADDYVQAGVNAGFAQSQDPFQQPLRSIWQTRLSITDS
FRRNDACSAYLLPLLDTQCAQNVHLMQGLTVSNIVFERNTNGTTPTQPPS
LKAVAVDTIPSPGSSQSAQRIFASREILITAGPYNSPKLLQLSGIGLKFV
LDAAGVPQVLNLPVGEATICRASGTIPSTYTGVPDEPANNQTLVNSPQAR
QQWEAGLGGILGTPVSAANGVAGTDAYFGSTLVPFVPGAPEVRSACYHNT
ETTGYLRIRDSNPFSTPLVKYNLLSSAADVQRLTNCLKDMANVHRQFPAR
FGMSFMYPPNGDVTEGFVRSVAQWGAHFVGGCPVGDVLAGDFTVKGTSDL
RVIDASAIRTMPVSAGPMASVYMLAELMGDRLIEQYSANLS*
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mRNA from alignment at tig00000016_pilon:1585088..1586713-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10346.t1 ID=Ggra10346.t1|Name=Ggra10346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00000016_pilon:1585088..1586713- (Gracilaria gracilis GNS1m male)
ATGGCGTCGCGCGCCGCCACCGTCGCGCTCTGCGTCGCCGCGCTGGCGTT
CGTCGCGGCCGCGCAGCCGGCCGCCGACTTCCTCATCGTGGGCGGCGGCA
CGGCGGGCTGCGTGCTGGCCGCCAAGCTATGCACGGCGTTTCCCAACCAG
CGCGTGGTGGTGATCGAGCGCGGGCTGGCGCGCTCCGCGCAGGCCGACTT
CCTGGTGCACGCGCCGCGCAACCTGTTCTCCGTGCTGTCGGAGCGCTCGG
TGGCCGAGCTCATCCCGTCGCTGCCGGACGTCGGGCTCAACTCGCGGGGC
GTCGACGCCGTCACCGGCGCCACGCTCGGCGGCTCCACCGCCATCAACGG
CATGCAGTGGACTGTGCCGCTGCCGGGCACCGTGGAGCAGTGGGGCGTGC
CCGGCCTCACCACTGCCGTGGCTGACGCTTACTTCCGCGCCGTCTACGAC
AAAGTCGGCTTTGGGCCGCCTCAAAACCCACTTCAGTACGCCGATGACTA
CGTGCAGGCGGGCGTCAACGCCGGCTTTGCCCAAAGTCAAGATCCGTTCC
AGCAGCCGTTGCGTTCCATTTGGCAGACCCGCCTCTCCATCACTGATTCC
TTCCGTCGAAACGACGCGTGTTCGGCGTACCTGCTCCCGCTTCTCGACAC
GCAATGTGCGCAGAACGTCCACTTGATGCAAGGTCTTACCGTGTCAAACA
TCGTCTTCGAGCGCAACACCAACGGCACCACGCCCACGCAGCCGCCCTCT
CTGAAGGCGGTTGCCGTCGATACCATCCCGTCGCCGGGCAGCTCGCAATC
GGCTCAACGTATCTTTGCGTCAAGAGAAATCCTCATCACGGCCGGTCCGT
ACAATTCTCCAAAGCTTCTGCAACTGTCTGGAATTGGCTTAAAGTTCGTG
TTGGACGCAGCCGGCGTTCCTCAAGTGCTCAATTTGCCTGTCGGGGAGGC
AACCATCTGTCGTGCCTCTGGCACCATTCCTTCGACGTACACGGGTGTTC
CGGATGAGCCTGCCAACAATCAGACGCTGGTAAACTCTCCCCAAGCGCGC
CAACAGTGGGAAGCTGGGCTTGGAGGTATTCTTGGTACGCCCGTCTCTGC
GGCCAACGGTGTGGCGGGTACGGACGCGTACTTTGGCTCTACGCTTGTGC
CGTTTGTTCCGGGCGCGCCTGAGGTTCGTTCCGCATGCTACCACAACACT
GAGACCACAGGTTACCTGCGCATTCGCGATTCGAATCCTTTCAGCACGCC
GTTGGTCAAGTACAACCTGCTCTCGTCGGCAGCAGACGTGCAAAGGCTGA
CAAACTGTCTGAAGGACATGGCGAATGTGCACCGTCAGTTCCCCGCGCGG
TTTGGTATGTCGTTCATGTACCCGCCGAACGGGGATGTGACGGAGGGATT
CGTGCGAAGTGTGGCGCAGTGGGGGGCTCATTTTGTGGGCGGATGTCCCG
TCGGAGACGTTCTGGCGGGCGACTTTACGGTGAAGGGTACGAGTGATCTG
AGGGTGATTGATGCGTCGGCGATCCGTACGATGCCTGTGTCTGCCGGTCC
TATGGCCTCTGTGTACATGTTGGCCGAGTTGATGGGGGACAGGCTTATCG
AACAATACTCTGCGAACTTGAGCTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1585088..1586713-

>Ggra10346.t1 ID=Ggra10346.t1|Name=Ggra10346.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1626bp|location=Sequence derived from alignment at tig00000016_pilon:1585088..1586713- (Gracilaria gracilis GNS1m male)
ATGGCGTCGCGCGCCGCCACCGTCGCGCTCTGCGTCGCCGCGCTGGCGTT
CGTCGCGGCCGCGCAGCCGGCCGCCGACTTCCTCATCGTGGGCGGCGGCA
CGGCGGGCTGCGTGCTGGCCGCCAAGCTATGCACGGCGTTTCCCAACCAG
CGCGTGGTGGTGATCGAGCGCGGGCTGGCGCGCTCCGCGCAGGCCGACTT
CCTGGTGCACGCGCCGCGCAACCTGTTCTCCGTGCTGTCGGAGCGCTCGG
TGGCCGAGCTCATCCCGTCGCTGCCGGACGTCGGGCTCAACTCGCGGGGC
GTCGACGCCGTCACCGGCGCCACGCTCGGCGGCTCCACCGCCATCAACGG
CATGCAGTGGACTGTGCCGCTGCCGGGCACCGTGGAGCAGTGGGGCGTGC
CCGGCCTCACCACTGCCGTGGCTGACGCTTACTTCCGCGCCGTCTACGAC
AAAGTCGGCTTTGGGCCGCCTCAAAACCCACTTCAGTACGCCGATGACTA
CGTGCAGGCGGGCGTCAACGCCGGCTTTGCCCAAAGTCAAGATCCGTTCC
AGCAGCCGTTGCGTTCCATTTGGCAGACCCGCCTCTCCATCACTGATTCC
TTCCGTCGAAACGACGCGTGTTCGGCGTACCTGCTCCCGCTTCTCGACAC
GCAATGTGCGCAGAACGTCCACTTGATGCAAGGTCTTACCGTGTCAAACA
TCGTCTTCGAGCGCAACACCAACGGCACCACGCCCACGCAGCCGCCCTCT
CTGAAGGCGGTTGCCGTCGATACCATCCCGTCGCCGGGCAGCTCGCAATC
GGCTCAACGTATCTTTGCGTCAAGAGAAATCCTCATCACGGCCGGTCCGT
ACAATTCTCCAAAGCTTCTGCAACTGTCTGGAATTGGCTTAAAGTTCGTG
TTGGACGCAGCCGGCGTTCCTCAAGTGCTCAATTTGCCTGTCGGGGAGGC
AACCATCTGTCGTGCCTCTGGCACCATTCCTTCGACGTACACGGGTGTTC
CGGATGAGCCTGCCAACAATCAGACGCTGGTAAACTCTCCCCAAGCGCGC
CAACAGTGGGAAGCTGGGCTTGGAGGTATTCTTGGTACGCCCGTCTCTGC
GGCCAACGGTGTGGCGGGTACGGACGCGTACTTTGGCTCTACGCTTGTGC
CGTTTGTTCCGGGCGCGCCTGAGGTTCGTTCCGCATGCTACCACAACACT
GAGACCACAGGTTACCTGCGCATTCGCGATTCGAATCCTTTCAGCACGCC
GTTGGTCAAGTACAACCTGCTCTCGTCGGCAGCAGACGTGCAAAGGCTGA
CAAACTGTCTGAAGGACATGGCGAATGTGCACCGTCAGTTCCCCGCGCGG
TTTGGTATGTCGTTCATGTACCCGCCGAACGGGGATGTGACGGAGGGATT
CGTGCGAAGTGTGGCGCAGTGGGGGGCTCATTTTGTGGGCGGATGTCCCG
TCGGAGACGTTCTGGCGGGCGACTTTACGGTGAAGGGTACGAGTGATCTG
AGGGTGATTGATGCGTCGGCGATCCGTACGATGCCTGTGTCTGCCGGTCC
TATGGCCTCTGTGTACATGTTGGCCGAGTTGATGGGGGACAGGCTTATCG
AACAATACTCTGCGAACTTGAGCTGA
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