Ggra10345.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10345.t1
Unique NameGgra10345.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1583359..1583973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10345Ggra10345Gracilaria gracilis GNS1m malegenetig00000016_pilon 1583359..1583973 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10345.t1.start1Ggra10345.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1583359..1583361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10345.t1.CDS1Ggra10345.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1583359..1583973 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10345.t1.exon1Ggra10345.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1583359..1583973 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10345.t1.stop1Ggra10345.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1583971..1583973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10345.t1Ggra10345.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1583359..1583973 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10345.t1 ID=Ggra10345.t1|Name=Ggra10345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
LPGFPFVPAPAPPAPAPAPPAPAPAPPAPAPAPPAPVPVPPRRKSKKRFV
RPPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPA
PAPAPAAPVITVTDSAAATAVGAGGAGGAGGAGTGTGVVAMAGIGGAGDA
SPGVVMGAIGSGGSGNAAASGGGTAANIGTFMNAGLGAVGAPGGIGSGVA
TATA*
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spliced messenger RNA

>Ggra10345.t1 ID=Ggra10345.t1|Name=Ggra10345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000016_pilon:1583359..1583973+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCCCGGCTTTCCGTTCGTCCCCGCGCCCGCTCCTCCTGCGCCGGCCCC
CGCCCCTCCTGCGCCCGCGCCGGCCCCTCCTGCGCCAGCCCCCGCCCCTC
CTGCGCCCGTGCCGGTTCCGCCGCGTCGCAAGTCGAAGAAGCGCTTCGTG
CGGCCGCCAGCTCCTGCACCGGCTCCCGCACCAGCTCCGGCCCCCGCACC
AGCTCCGGCCCCCGCACCAGCTCCGGCCCCCGCACCAGCTCCGGCTCCCG
CACCAGCCCCCGCACCGGCTCCAGCTCCGGCGCCGGCCCCCGCACCGGCT
CCAGCTCCGGCGCCGGCCGCCCCCGTGATCACAGTGACTGACTCGGCGGC
CGCGACGGCCGTCGGCGCCGGTGGCGCGGGCGGCGCCGGAGGCGCCGGCA
CCGGCACGGGCGTGGTGGCCATGGCAGGCATCGGAGGCGCTGGCGACGCG
TCGCCGGGAGTGGTAATGGGCGCCATCGGCTCCGGCGGCTCTGGGAACGC
GGCCGCCAGTGGCGGCGGCACGGCAGCCAACATCGGCACGTTCATGAACG
CTGGTTTGGGCGCAGTTGGCGCGCCGGGCGGGATTGGCAGCGGCGTTGCG
ACGGCCACCGCTTAG
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protein sequence of Ggra10345.t1

>Ggra10345.t1 ID=Ggra10345.t1|Name=Ggra10345.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
LPGFPFVPAPAPPAPAPAPPAPAPAPPAPAPAPPAPVPVPPRRKSKKRFV
RPPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPA
PAPAPAAPVITVTDSAAATAVGAGGAGGAGGAGTGTGVVAMAGIGGAGDA
SPGVVMGAIGSGGSGNAAASGGGTAANIGTFMNAGLGAVGAPGGIGSGVA
TATA*
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mRNA from alignment at tig00000016_pilon:1583359..1583973+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10345.t1 ID=Ggra10345.t1|Name=Ggra10345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000016_pilon:1583359..1583973+ (Gracilaria gracilis GNS1m male)
TTGCCCGGCTTTCCGTTCGTCCCCGCGCCCGCTCCTCCTGCGCCGGCCCC
CGCCCCTCCTGCGCCCGCGCCGGCCCCTCCTGCGCCAGCCCCCGCCCCTC
CTGCGCCCGTGCCGGTTCCGCCGCGTCGCAAGTCGAAGAAGCGCTTCGTG
CGGCCGCCAGCTCCTGCACCGGCTCCCGCACCAGCTCCGGCCCCCGCACC
AGCTCCGGCCCCCGCACCAGCTCCGGCCCCCGCACCAGCTCCGGCTCCCG
CACCAGCCCCCGCACCGGCTCCAGCTCCGGCGCCGGCCCCCGCACCGGCT
CCAGCTCCGGCGCCGGCCGCCCCCGTGATCACAGTGACTGACTCGGCGGC
CGCGACGGCCGTCGGCGCCGGTGGCGCGGGCGGCGCCGGAGGCGCCGGCA
CCGGCACGGGCGTGGTGGCCATGGCAGGCATCGGAGGCGCTGGCGACGCG
TCGCCGGGAGTGGTAATGGGCGCCATCGGCTCCGGCGGCTCTGGGAACGC
GGCCGCCAGTGGCGGCGGCACGGCAGCCAACATCGGCACGTTCATGAACG
CTGGTTTGGGCGCAGTTGGCGCGCCGGGCGGGATTGGCAGCGGCGTTGCG
ACGGCCACCGCTTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:1583359..1583973+

>Ggra10345.t1 ID=Ggra10345.t1|Name=Ggra10345.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000016_pilon:1583359..1583973+ (Gracilaria gracilis GNS1m male)
TTGCCCGGCTTTCCGTTCGTCCCCGCGCCCGCTCCTCCTGCGCCGGCCCC
CGCCCCTCCTGCGCCCGCGCCGGCCCCTCCTGCGCCAGCCCCCGCCCCTC
CTGCGCCCGTGCCGGTTCCGCCGCGTCGCAAGTCGAAGAAGCGCTTCGTG
CGGCCGCCAGCTCCTGCACCGGCTCCCGCACCAGCTCCGGCCCCCGCACC
AGCTCCGGCCCCCGCACCAGCTCCGGCCCCCGCACCAGCTCCGGCTCCCG
CACCAGCCCCCGCACCGGCTCCAGCTCCGGCGCCGGCCCCCGCACCGGCT
CCAGCTCCGGCGCCGGCCGCCCCCGTGATCACAGTGACTGACTCGGCGGC
CGCGACGGCCGTCGGCGCCGGTGGCGCGGGCGGCGCCGGAGGCGCCGGCA
CCGGCACGGGCGTGGTGGCCATGGCAGGCATCGGAGGCGCTGGCGACGCG
TCGCCGGGAGTGGTAATGGGCGCCATCGGCTCCGGCGGCTCTGGGAACGC
GGCCGCCAGTGGCGGCGGCACGGCAGCCAACATCGGCACGTTCATGAACG
CTGGTTTGGGCGCAGTTGGCGCGCCGGGCGGGATTGGCAGCGGCGTTGCG
ACGGCCACCGCTTAG
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