Ggra10344.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10344.t1
Unique NameGgra10344.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1579797..1580399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10344Ggra10344Gracilaria gracilis GNS1m malegenetig00000016_pilon 1579797..1580399 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10344.t1.start1Ggra10344.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1579797..1579799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10344.t1.CDS1Ggra10344.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1579797..1580399 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10344.t1.exon1Ggra10344.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1579797..1580399 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10344.t1.stop1Ggra10344.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1580397..1580399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10344.t1Ggra10344.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1579797..1580399 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10344.t1 ID=Ggra10344.t1|Name=Ggra10344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=201bp
MKRTLLLLLLAVLLGLTYGSPVARQTTAGELIEELPPEILGMHISDTNMT
VLELLLLVFNATMPAPTADGALPPPSPELADMSAVAAPAALSAASAPVAP
TAVSAAPAPAPPPPPAPAPAPPPPPPAPPMPPPPPPPPPAAVPTPVVVSS
TTTTTMESPEGGTLTTTSGTISASEGPGGSFSLSGSFGTTTVEGPGVFIV
*
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spliced messenger RNA

>Ggra10344.t1 ID=Ggra10344.t1|Name=Ggra10344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000016_pilon:1579797..1580399+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGCACgctgctgctgctgctgctggccgtactgctgGGCCTGAC
GTACGGCTCGCCCGTCGCGCGCCAAACGACGGCGGGGGAGCTGATTGAAG
AGCTGCCGCCCGAGATCCTGGGCATGCACATCAGCGACACGAACATGACT
GTGCTCGAGCTGCTGCTGTTGGTCTTCAACGCCACCATGCCCGCGCCCAC
GGCGGACGGCGCGCTGCCGCCACCGTCGCCGGAGCTGGCGGACATGAGCG
CTGTGGCTGCTCCCGCTGCGTTGAGCGCGGCTAGTGCGCCTGTGGCGCCC
ACCGCCGTGAGTGCTGCgccggcgcctgcgccgccgccgccacctgcgcc
tgcgcctgcgccgccgccgccgccgcctgcgcctccaatgccgccaccac
caccgcctcctccGCCGGCGGCAGTGCCTACGCCGGTCGTGGTGAGCAGC
ACCACGACTACAACTATGGAATCTCCGGAAGGCGGGACCCTCACGACTAC
GAGCGGGACGATCAGCGCGTCCGAGGGACCGGGCGGCTCGTTTTCGTTAT
CCGGCTCGTTTGGCACCACTACGGTGGAAGGGCCGGGCGTGTTCATCGTA
TGA
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protein sequence of Ggra10344.t1

>Ggra10344.t1 ID=Ggra10344.t1|Name=Ggra10344.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=201bp
MKRTLLLLLLAVLLGLTYGSPVARQTTAGELIEELPPEILGMHISDTNMT
VLELLLLVFNATMPAPTADGALPPPSPELADMSAVAAPAALSAASAPVAP
TAVSAAPAPAPPPPPAPAPAPPPPPPAPPMPPPPPPPPPAAVPTPVVVSS
TTTTTMESPEGGTLTTTSGTISASEGPGGSFSLSGSFGTTTVEGPGVFIV
*
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mRNA from alignment at tig00000016_pilon:1579797..1580399+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10344.t1 ID=Ggra10344.t1|Name=Ggra10344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000016_pilon:1579797..1580399+ (Gracilaria gracilis GNS1m male)
ATGAAGCGCACgctgctgctgctgctgctggccgtactgctgGGCCTGAC
GTACGGCTCGCCCGTCGCGCGCCAAACGACGGCGGGGGAGCTGATTGAAG
AGCTGCCGCCCGAGATCCTGGGCATGCACATCAGCGACACGAACATGACT
GTGCTCGAGCTGCTGCTGTTGGTCTTCAACGCCACCATGCCCGCGCCCAC
GGCGGACGGCGCGCTGCCGCCACCGTCGCCGGAGCTGGCGGACATGAGCG
CTGTGGCTGCTCCCGCTGCGTTGAGCGCGGCTAGTGCGCCTGTGGCGCCC
ACCGCCGTGAGTGCTGCgccggcgcctgcgccgccgccgccacctgcgcc
tgcgcctgcgccgccgccgccgccgcctgcgcctccaatgccgccaccac
caccgcctcctccGCCGGCGGCAGTGCCTACGCCGGTCGTGGTGAGCAGC
ACCACGACTACAACTATGGAATCTCCGGAAGGCGGGACCCTCACGACTAC
GAGCGGGACGATCAGCGCGTCCGAGGGACCGGGCGGCTCGTTTTCGTTAT
CCGGCTCGTTTGGCACCACTACGGTGGAAGGGCCGGGCGTGTTCATCGTA
TGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1579797..1580399+

>Ggra10344.t1 ID=Ggra10344.t1|Name=Ggra10344.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=603bp|location=Sequence derived from alignment at tig00000016_pilon:1579797..1580399+ (Gracilaria gracilis GNS1m male)
ATGAAGCGCACgctgctgctgctgctgctggccgtactgctgGGCCTGAC
GTACGGCTCGCCCGTCGCGCGCCAAACGACGGCGGGGGAGCTGATTGAAG
AGCTGCCGCCCGAGATCCTGGGCATGCACATCAGCGACACGAACATGACT
GTGCTCGAGCTGCTGCTGTTGGTCTTCAACGCCACCATGCCCGCGCCCAC
GGCGGACGGCGCGCTGCCGCCACCGTCGCCGGAGCTGGCGGACATGAGCG
CTGTGGCTGCTCCCGCTGCGTTGAGCGCGGCTAGTGCGCCTGTGGCGCCC
ACCGCCGTGAGTGCTGCgccggcgcctgcgccgccgccgccacctgcgcc
tgcgcctgcgccgccgccgccgccgcctgcgcctccaatgccgccaccac
caccgcctcctccGCCGGCGGCAGTGCCTACGCCGGTCGTGGTGAGCAGC
ACCACGACTACAACTATGGAATCTCCGGAAGGCGGGACCCTCACGACTAC
GAGCGGGACGATCAGCGCGTCCGAGGGACCGGGCGGCTCGTTTTCGTTAT
CCGGCTCGTTTGGCACCACTACGGTGGAAGGGCCGGGCGTGTTCATCGTA
TGA
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