Ggra10343.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10343.t1
Unique NameGgra10343.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length630
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1477054..1479026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10343Ggra10343Gracilaria gracilis GNS1m malegenetig00000016_pilon 1477054..1479026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10343.t1Ggra10343.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1477054..1479026 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10343.t1.stop1Ggra10343.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1477054..1477056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10343.t1.CDS1Ggra10343.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1477054..1477482 -
Ggra10343.t1.CDS2Ggra10343.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1477566..1479026 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10343.t1.exon1Ggra10343.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1477054..1477482 -
Ggra10343.t1.exon2Ggra10343.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 1477566..1479026 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10343.t1.intron1Ggra10343.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1477483..1477565 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10343.t1.start1Ggra10343.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1479024..1479026 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10343.t1 ID=Ggra10343.t1|Name=Ggra10343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp
MTRLLAYLLLLVLAAHPSRTAAKRRWARLSVPPSQLITSPSSCLTVLECP
PDRFCKAPPQAGAFSFFAPAGSAEISTCAPRLPEGANCTNVGVSECAQGT
FCGFLDDFNPTPLRCLRQGAQGAACALSATSPCQGDLVCEFEPTCRPFDF
GFEGDTCQFDRHCQQERGFFCRANFNQCAPKKPPGGTCEIEPNNFECDGF
CVSSSDPFVTPGVCQSLQKAGESCNDDRQCQTLPRFFGRSRSADLLCNRP
SGPVGVCVLETDLIRDLGAPCNPNNDTCDARRGLSCGRVRRKFKCVQRGK
ASDQFLDFCTPGSRLSSCPPDSRGNLRECRRALNASKQFTGVFGCRTIRQ
VVPLGNPCSNREFAVCARGTVCAVAPGVERPSGRFPPPPLRTCMKVVPVG
ASCPDQFRFKCEEGSSCVQGICQRVDTPPTVPVTFASINSDCSELSCPPG
TVCASDPEFPQSSKTCRLPVLEVKLWLPCFDSAQFDLRCKDNLQCSRNYL
DESVRVCRPKRGIGGICENDDSCVGDLECDPSFRQEPFQRRCFDPALSLN
IGDACNPYPRVEDPRCVAVVEAGPFSNVIPLSCLPKNGSNVCQRPAGLFQ
QCSAEENIACESKDLVCSELNVCIPKSQV*
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spliced messenger RNA

>Ggra10343.t1 ID=Ggra10343.t1|Name=Ggra10343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00000016_pilon:1477054..1479026- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGTCTGCTGGCGTATCTGCTGCTGCTCGTGCTGGCGGCGCATCC
GTCGCGTACGGCCGCCAAACGCAGGTGGGCGCGACTCTCCGTGCCGCCGT
CGCAGCTCATCACGTCGCCGTCGTCGTGTCTGACCGTGCTCGAATGCCCG
CCGGACCGCTTCTGCAAGGCGCCGCCGCAGGCGGGCGCCTTTTCCTTCTT
CGCCCCGGCCGGCTCGGCAGAGATCTCCACCTGCGCGCCGCGCCTGCCCG
AGGGCGCCAACTGCACCAACGTCGGCGTCAGCGAGTGCGCGCAGGGAACC
TTCTGTGGCTTCCTGGATGACTTCAACCCCACGCCGCTGCGCTGTCTCCG
CCAGGGCGCGCAGGGCGCCGCCTGCGCCCTCAGCGCCACTTCCCCGTGCC
AGGGTGACCTGGTGTGCGAGTTTGAGCCTACGTGCCGACCGTTCGACTTT
GGCTTCGAGGGCGACACCTGTCAGTTTGATCGCCACTGCCAGCAGGAACG
CGGCTTCTTCTGCCGCGCCAACTTCAACCAGTGCGCGCCCAAGAAGCCGC
CGGGCGGCACATGCGAGATCGAGCCCAACAACTTCGAGTGCGACGGCTTC
TGCGTCAGCAGCTCCGATCCGTTCGTGACGCCGGGTGTCTGTCAAAGCCT
TCAGAAAGCGGGTGAGAGCTGCAACGACGATCGCCAATGTCAGACGCTTC
CGCGCTTCTTCGGCCGCTCACGATCAGCCGACCTGCTGTGCAACCGTCCA
TCCGGTCCCGTCGGCGTGTGCGTGCTGGAGACCGACCTCATCCGAGATCT
GGGCGCGCCCTGCAACCCGAACAACGATACGTGTGACGCTCGTAGGGGGC
TCAGCTGTGGTCGCGTCAGGCGCAAGTTCAAGTGCGTGCAGCGCGGAAAG
GCGTCAGACCAGTTCTTGGACTTCTGCACGCCGGGGTCGCGGCTGAGCAG
CTGCCCGCCGGACTCTCGTGGCAATCTGCGTGAGTGTCGTCGCGCCTTGA
ACGCCTCCAAGCAGTTCACGGGTGTGTTTGGGTGCAGGACGATTCGACAG
GTCGTGCCGCTGGGCAATCCGTGCAGTAACCGCGAATTTGCTGTATGTGC
TCGCGGCACGGTTTGTGCAGTGGCTCCGGGCGTTGAACGACCTTCGGGCC
GTTTCCCGCCGCCGCCGCTGCGTACTTGCATGAAGGTTGTGCCAGTTGGT
GCTTCCTGCCCTGATCAGTTCCGCTTCAAGTGCGAGGAGGGTTCTTCCTG
CGTTCAGGGAATCTGCCAACGAGTGGATACTCCCCCGACTGTGCCTGTTA
CGTTCGCGTCGATCAATTCTGATTGCTCTGAATTGTCTTGCCCGCCGGGA
ACAGTATGCGCTTCCGATCCGGAGTTTCCTCAGTCTTCCAAGACTTGTAG
ACTTCCAGTTCTTGAGGTGAAATTGTGGCTGCCATGTTTTGATTCTGCTC
AGTTTGATCTCAGATGCAAGGACAATCTGCAGTGCTCTCGTAACTACCTG
GATGAAAGCGTACGAGTGTGCCGTCCGAAGAGAGGAATAGGTGGTATATG
TGAAAATGACGATTCTTGCGTCGGCGATCTCGAGTGTGATCCATCGTTTA
GGCAAGAGCCGTTCCAACGAAGGTGTTTTGACCCAGCCCTGTCGCTCAAT
ATCGGCGATGCTTGCAATCCGTATCCTCGCGTGGAAGACCCCAGATGCGT
GGCTGTTGTCGAGGCGGGCCCTTTCTCAAACGTGATCCCTCTTTCGTGTT
TGCCCAAGAATGGGTCAAATGTGTGCCAGAGGCCCGCTGGTTTGTTCCAA
CAGTGTTCGGCAGAAGAGAACATAGCATGTGAATCGAAAGACTTGGTCTG
CAGCGAATTGAATGTCTGTATTCCAAAGTCTCAAGTTTGA
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protein sequence of Ggra10343.t1

>Ggra10343.t1 ID=Ggra10343.t1|Name=Ggra10343.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=630bp
MTRLLAYLLLLVLAAHPSRTAAKRRWARLSVPPSQLITSPSSCLTVLECP
PDRFCKAPPQAGAFSFFAPAGSAEISTCAPRLPEGANCTNVGVSECAQGT
FCGFLDDFNPTPLRCLRQGAQGAACALSATSPCQGDLVCEFEPTCRPFDF
GFEGDTCQFDRHCQQERGFFCRANFNQCAPKKPPGGTCEIEPNNFECDGF
CVSSSDPFVTPGVCQSLQKAGESCNDDRQCQTLPRFFGRSRSADLLCNRP
SGPVGVCVLETDLIRDLGAPCNPNNDTCDARRGLSCGRVRRKFKCVQRGK
ASDQFLDFCTPGSRLSSCPPDSRGNLRECRRALNASKQFTGVFGCRTIRQ
VVPLGNPCSNREFAVCARGTVCAVAPGVERPSGRFPPPPLRTCMKVVPVG
ASCPDQFRFKCEEGSSCVQGICQRVDTPPTVPVTFASINSDCSELSCPPG
TVCASDPEFPQSSKTCRLPVLEVKLWLPCFDSAQFDLRCKDNLQCSRNYL
DESVRVCRPKRGIGGICENDDSCVGDLECDPSFRQEPFQRRCFDPALSLN
IGDACNPYPRVEDPRCVAVVEAGPFSNVIPLSCLPKNGSNVCQRPAGLFQ
QCSAEENIACESKDLVCSELNVCIPKSQV*
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mRNA from alignment at tig00000016_pilon:1477054..1479026-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10343.t1 ID=Ggra10343.t1|Name=Ggra10343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1973bp|location=Sequence derived from alignment at tig00000016_pilon:1477054..1479026- (Gracilaria gracilis GNS1m male)
ATGACTCGTCTGCTGGCGTATCTGCTGCTGCTCGTGCTGGCGGCGCATCC
GTCGCGTACGGCCGCCAAACGCAGGTGGGCGCGACTCTCCGTGCCGCCGT
CGCAGCTCATCACGTCGCCGTCGTCGTGTCTGACCGTGCTCGAATGCCCG
CCGGACCGCTTCTGCAAGGCGCCGCCGCAGGCGGGCGCCTTTTCCTTCTT
CGCCCCGGCCGGCTCGGCAGAGATCTCCACCTGCGCGCCGCGCCTGCCCG
AGGGCGCCAACTGCACCAACGTCGGCGTCAGCGAGTGCGCGCAGGGAACC
TTCTGTGGCTTCCTGGATGACTTCAACCCCACGCCGCTGCGCTGTCTCCG
CCAGGGCGCGCAGGGCGCCGCCTGCGCCCTCAGCGCCACTTCCCCGTGCC
AGGGTGACCTGGTGTGCGAGTTTGAGCCTACGTGCCGACCGTTCGACTTT
GGCTTCGAGGGCGACACCTGTCAGTTTGATCGCCACTGCCAGCAGGAACG
CGGCTTCTTCTGCCGCGCCAACTTCAACCAGTGCGCGCCCAAGAAGCCGC
CGGGCGGCACATGCGAGATCGAGCCCAACAACTTCGAGTGCGACGGCTTC
TGCGTCAGCAGCTCCGATCCGTTCGTGACGCCGGGTGTCTGTCAAAGCCT
TCAGAAAGCGGGTGAGAGCTGCAACGACGATCGCCAATGTCAGACGCTTC
CGCGCTTCTTCGGCCGCTCACGATCAGCCGACCTGCTGTGCAACCGTCCA
TCCGGTCCCGTCGGCGTGTGCGTGCTGGAGACCGACCTCATCCGAGATCT
GGGCGCGCCCTGCAACCCGAACAACGATACGTGTGACGCTCGTAGGGGGC
TCAGCTGTGGTCGCGTCAGGCGCAAGTTCAAGTGCGTGCAGCGCGGAAAG
GCGTCAGACCAGTTCTTGGACTTCTGCACGCCGGGGTCGCGGCTGAGCAG
CTGCCCGCCGGACTCTCGTGGCAATCTGCGTGAGTGTCGTCGCGCCTTGA
ACGCCTCCAAGCAGTTCACGGGTGTGTTTGGGTGCAGGACGATTCGACAG
GTCGTGCCGCTGGGCAATCCGTGCAGTAACCGCGAATTTGCTGTATGTGC
TCGCGGCACGGTTTGTGCAGTGGCTCCGGGCGTTGAACGACCTTCGGGCC
GTTTCCCGCCGCCGCCGCTGCGTACTTGCATGAAGGTTGTGCCAGTTGGT
GCTTCCTGCCCTGATCAGTTCCGCTTCAAGTGCGAGGAGGGTTCTTCCTG
CGTTCAGGGAATCTGCCAACGAGTGGATACTCCCCCGACTGTGCCTGTTA
CGTTCGCGTCGATCAATTCTGATTGCTCTGAATTGTCTTGCCCGCCGGGA
ACAGTATGCGCTTCCGATCCGGAGTTTCCTCAGTCTTCCAAGACTTGTAG
ACTTCCAGTTCTTGAGGTGAAATTGTGGCTGCCATGTTTTGATTCTGCTC
AGTTTGATCTCGTAAGTTTGACCACATTTGCTTTTCCCACATGACACTCA
TCACTACTAACCACTTGTCATTTGTACTTGTGATAATAACGCAGAGATGC
AAGGACAATCTGCAGTGCTCTCGTAACTACCTGGATGAAAGCGTACGAGT
GTGCCGTCCGAAGAGAGGAATAGGTGGTATATGTGAAAATGACGATTCTT
GCGTCGGCGATCTCGAGTGTGATCCATCGTTTAGGCAAGAGCCGTTCCAA
CGAAGGTGTTTTGACCCAGCCCTGTCGCTCAATATCGGCGATGCTTGCAA
TCCGTATCCTCGCGTGGAAGACCCCAGATGCGTGGCTGTTGTCGAGGCGG
GCCCTTTCTCAAACGTGATCCCTCTTTCGTGTTTGCCCAAGAATGGGTCA
AATGTGTGCCAGAGGCCCGCTGGTTTGTTCCAACAGTGTTCGGCAGAAGA
GAACATAGCATGTGAATCGAAAGACTTGGTCTGCAGCGAATTGAATGTCT
GTATTCCAAAGTCTCAAGTTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1477054..1479026-

>Ggra10343.t1 ID=Ggra10343.t1|Name=Ggra10343.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1890bp|location=Sequence derived from alignment at tig00000016_pilon:1477054..1479026- (Gracilaria gracilis GNS1m male)
ATGACTCGTCTGCTGGCGTATCTGCTGCTGCTCGTGCTGGCGGCGCATCC
GTCGCGTACGGCCGCCAAACGCAGGTGGGCGCGACTCTCCGTGCCGCCGT
CGCAGCTCATCACGTCGCCGTCGTCGTGTCTGACCGTGCTCGAATGCCCG
CCGGACCGCTTCTGCAAGGCGCCGCCGCAGGCGGGCGCCTTTTCCTTCTT
CGCCCCGGCCGGCTCGGCAGAGATCTCCACCTGCGCGCCGCGCCTGCCCG
AGGGCGCCAACTGCACCAACGTCGGCGTCAGCGAGTGCGCGCAGGGAACC
TTCTGTGGCTTCCTGGATGACTTCAACCCCACGCCGCTGCGCTGTCTCCG
CCAGGGCGCGCAGGGCGCCGCCTGCGCCCTCAGCGCCACTTCCCCGTGCC
AGGGTGACCTGGTGTGCGAGTTTGAGCCTACGTGCCGACCGTTCGACTTT
GGCTTCGAGGGCGACACCTGTCAGTTTGATCGCCACTGCCAGCAGGAACG
CGGCTTCTTCTGCCGCGCCAACTTCAACCAGTGCGCGCCCAAGAAGCCGC
CGGGCGGCACATGCGAGATCGAGCCCAACAACTTCGAGTGCGACGGCTTC
TGCGTCAGCAGCTCCGATCCGTTCGTGACGCCGGGTGTCTGTCAAAGCCT
TCAGAAAGCGGGTGAGAGCTGCAACGACGATCGCCAATGTCAGACGCTTC
CGCGCTTCTTCGGCCGCTCACGATCAGCCGACCTGCTGTGCAACCGTCCA
TCCGGTCCCGTCGGCGTGTGCGTGCTGGAGACCGACCTCATCCGAGATCT
GGGCGCGCCCTGCAACCCGAACAACGATACGTGTGACGCTCGTAGGGGGC
TCAGCTGTGGTCGCGTCAGGCGCAAGTTCAAGTGCGTGCAGCGCGGAAAG
GCGTCAGACCAGTTCTTGGACTTCTGCACGCCGGGGTCGCGGCTGAGCAG
CTGCCCGCCGGACTCTCGTGGCAATCTGCGTGAGTGTCGTCGCGCCTTGA
ACGCCTCCAAGCAGTTCACGGGTGTGTTTGGGTGCAGGACGATTCGACAG
GTCGTGCCGCTGGGCAATCCGTGCAGTAACCGCGAATTTGCTGTATGTGC
TCGCGGCACGGTTTGTGCAGTGGCTCCGGGCGTTGAACGACCTTCGGGCC
GTTTCCCGCCGCCGCCGCTGCGTACTTGCATGAAGGTTGTGCCAGTTGGT
GCTTCCTGCCCTGATCAGTTCCGCTTCAAGTGCGAGGAGGGTTCTTCCTG
CGTTCAGGGAATCTGCCAACGAGTGGATACTCCCCCGACTGTGCCTGTTA
CGTTCGCGTCGATCAATTCTGATTGCTCTGAATTGTCTTGCCCGCCGGGA
ACAGTATGCGCTTCCGATCCGGAGTTTCCTCAGTCTTCCAAGACTTGTAG
ACTTCCAGTTCTTGAGGTGAAATTGTGGCTGCCATGTTTTGATTCTGCTC
AGTTTGATCTCAGATGCAAGGACAATCTGCAGTGCTCTCGTAACTACCTG
GATGAAAGCGTACGAGTGTGCCGTCCGAAGAGAGGAATAGGTGGTATATG
TGAAAATGACGATTCTTGCGTCGGCGATCTCGAGTGTGATCCATCGTTTA
GGCAAGAGCCGTTCCAACGAAGGTGTTTTGACCCAGCCCTGTCGCTCAAT
ATCGGCGATGCTTGCAATCCGTATCCTCGCGTGGAAGACCCCAGATGCGT
GGCTGTTGTCGAGGCGGGCCCTTTCTCAAACGTGATCCCTCTTTCGTGTT
TGCCCAAGAATGGGTCAAATGTGTGCCAGAGGCCCGCTGGTTTGTTCCAA
CAGTGTTCGGCAGAAGAGAACATAGCATGTGAATCGAAAGACTTGGTCTG
CAGCGAATTGAATGTCTGTATTCCAAAGTCTCAAGTTTGA
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