Ggra10341.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10341.t1
Unique NameGgra10341.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length443
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1415518..1417190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706447.1
PFAMsAuxin_resp,Bromodomain,WD40,zf-HC5HC2H
Max annot lvl2759|Eukaryota
KEGG koko:K11798
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0008150,GO:0008360,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022603,GO:0022604,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0065008,GO:0071840,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Evalue3.64e-07
EggNOG OGsCOG2319@1|root,KOG0644@2759|Eukaryota
Descriptionregulation of cell shape
COG categoryL
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10341Ggra10341Gracilaria gracilis GNS1m malegenetig00000016_pilon 1415518..1417190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10341.t1Ggra10341.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1415518..1417190 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10341.t1.start1Ggra10341.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1415518..1415520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10341.t1.CDS1Ggra10341.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1415518..1416082 +
Ggra10341.t1.CDS2Ggra10341.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1416427..1417190 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10341.t1.exon1Ggra10341.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1415518..1416082 +
Ggra10341.t1.exon2Ggra10341.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 1416427..1417190 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10341.t1.intron1Ggra10341.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1416083..1416426 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10341.t1.stop1Ggra10341.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1417188..1417190 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10341.t1 ID=Ggra10341.t1|Name=Ggra10341.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=443bp
MMESKKYDQCVEKGKEPLRMSKGGQGPADDVTGEKSVGRPEFGEQPEVDE
VLKNSPQNGESHSLLEALSNFSSAPVLIGASAQNRKRRMRICTRNTPFQA
RSGGSRKGHRLGAIDYAADSHTGALRQERNHVRGSQSVGSCYGHVNQTEA
GGNVVSQIPLNPSFTSERVDMKGANEAVFKCIEDHQGDKEKAEETSENGD
ECFFSGDPDKRYNKWIDPKRVSGLRTRPTRRTSKSNDLMLSKERVTGATE
NDIKSLEASTWLRSTSTPYVYVPQLGDDLMYFPGGHITAMEVSRSSGLDP
LLDNADFKRKGLEVLDGYLFSTDQLPLHFQVVDVHCDFPTLLAPKGRNVG
SRRGGKRQPDGNVVKPKTKLILTLQMVSPPRRRSGQSTAFVLSYFPVDVP
EYLVSTIRVNAALSRTWKPSDPFRILFLNEKRAWQYYTGKVR*
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spliced messenger RNA

>Ggra10341.t1 ID=Ggra10341.t1|Name=Ggra10341.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000016_pilon:1415518..1417190+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgatgGAGAGCAAGAAATACGACCAGTGCGTAGAAAAAGGCAAAGAACC
TCTACGAATGAGCAAAGGTGGGCAAGGCCCCGCGGATGACGTTACTGGAG
AGAAATCTGTGGGGCGTCCGGAGTTTGGTGAACAGCCTGAAGTTGACGAG
GTATTGAAGAACTCTCCACAAAATGGAGAGTCCCATTCACTGCTAGAGGC
CTTATCGAATTTCAGTTCTGCTCCAGTGCTCATTGGTGCATCTGCTCAAA
ATCGAAAGCGAAGAATGCGAATATGCACTAGAAACACCCCTTTTCAAGCC
AGATCAGGAGGGTCACGGAAAGGCCACCGTCTTGGTGCTATAGATTACGC
AGCGGACTCACACACAGGGGCGTTACGTCAAGAAAGAAACCATGTCAGAG
GATCTCAAAGCGTTGGTTCATGTTACGGGCACGTCAATCAAACAGAAGCT
GGAGGTAATGTGGTGTCCCAGATTCCACTAAATCCTTCTTTTACGAGCGA
AAGAGTTGACATGAAGGGGGCCAATGAAGCTGTTTTTAAATGTATTGAAG
ACCATCAGGGAGATAAAGAGAAGGCGGAGGAAACATCGGAGAACGGCGAT
GAATGCTTTTTCAGCGGCGACCCTGATAAACGTTATAACAAGTGGATTGA
CCCAAAAAGAGTTTCTGGTCTGCGAACGAGACCCACCAGAAGAACTTCGA
AGAGCAACGACCTTATGTTATCTAAAGAGCGGGTAACTGGGGCAACTGAG
AATGACATAAAGTCTTTAGAGGCCTCGACATGGCTAAGGTCAACTTCAAC
GCCGTATGTATACGTTCCGCAACTTGGAGACGATTTAATGTATTTCCCTG
GTGGCCATATAACAGCGATGGAGGTGTCAAGGTCTTCCGGTCTAGATCCG
CTGTTAGACAACGCTGACTTCAAGAGAAAGGGATTGGAGGTTCTCGACGG
ATATTTGTTTTCGACGGATCAGCTGCCTCTTCATTTTCAGGTTGTTGACG
TGCACTGCGATTTCCCGACACTTCTTGCACCGAAAGGGAGAAATGTAGGG
TCGCGAAGAGGTGGGAAAAGACAACCAGATGGGAATGTTGTGAAGCCGAA
GACAAAGTTAATTCTCACGTTACAAATGGTTTCTCCTCCGCGACGACGCT
CTGGGCAATCAACTGCTTTTGTTCTTTCCTATTTTCCTGTCGATGTTCCT
GAATACCTTGTTTCAACAATTCGAGTCAACGCTGCTCTGAGCCGTACATG
GAAACCTTCAGACCCTTTTCGAATTCTATTCTTAAACGAAAAGAGAGCAT
GGCAGTATTATACAGGCAAGGTGAGATAA
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protein sequence of Ggra10341.t1

>Ggra10341.t1 ID=Ggra10341.t1|Name=Ggra10341.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=443bp
MMESKKYDQCVEKGKEPLRMSKGGQGPADDVTGEKSVGRPEFGEQPEVDE
VLKNSPQNGESHSLLEALSNFSSAPVLIGASAQNRKRRMRICTRNTPFQA
RSGGSRKGHRLGAIDYAADSHTGALRQERNHVRGSQSVGSCYGHVNQTEA
GGNVVSQIPLNPSFTSERVDMKGANEAVFKCIEDHQGDKEKAEETSENGD
ECFFSGDPDKRYNKWIDPKRVSGLRTRPTRRTSKSNDLMLSKERVTGATE
NDIKSLEASTWLRSTSTPYVYVPQLGDDLMYFPGGHITAMEVSRSSGLDP
LLDNADFKRKGLEVLDGYLFSTDQLPLHFQVVDVHCDFPTLLAPKGRNVG
SRRGGKRQPDGNVVKPKTKLILTLQMVSPPRRRSGQSTAFVLSYFPVDVP
EYLVSTIRVNAALSRTWKPSDPFRILFLNEKRAWQYYTGKVR*
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mRNA from alignment at tig00000016_pilon:1415518..1417190+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10341.t1 ID=Ggra10341.t1|Name=Ggra10341.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1673bp|location=Sequence derived from alignment at tig00000016_pilon:1415518..1417190+ (Gracilaria gracilis GNS1m male)
atgatgGAGAGCAAGAAATACGACCAGTGCGTAGAAAAAGGCAAAGAACC
TCTACGAATGAGCAAAGGTGGGCAAGGCCCCGCGGATGACGTTACTGGAG
AGAAATCTGTGGGGCGTCCGGAGTTTGGTGAACAGCCTGAAGTTGACGAG
GTATTGAAGAACTCTCCACAAAATGGAGAGTCCCATTCACTGCTAGAGGC
CTTATCGAATTTCAGTTCTGCTCCAGTGCTCATTGGTGCATCTGCTCAAA
ATCGAAAGCGAAGAATGCGAATATGCACTAGAAACACCCCTTTTCAAGCC
AGATCAGGAGGGTCACGGAAAGGCCACCGTCTTGGTGCTATAGATTACGC
AGCGGACTCACACACAGGGGCGTTACGTCAAGAAAGAAACCATGTCAGAG
GATCTCAAAGCGTTGGTTCATGTTACGGGCACGTCAATCAAACAGAAGCT
GGAGGTAATGTGGTGTCCCAGATTCCACTAAATCCTTCTTTTACGAGCGA
AAGAGTTGACATGAAGGGGGCCAATGAAGCTGTTTTTAAATGTATTGAAG
ACCATCAGGGAGATAGTGCCAGCTGCTTCTGGCCATGACCTTCAATTCCA
CACCCAGATTCTCGGAGTCGAACTTCCCCTCACGAGCAAATGCAAAATCG
TTCCTTTGTTGATGGTTCTCCTGACTGTGGTATCAAAAACGCAGAAGTAC
GGAATGTCAGCAAACCTGATGGGAATGACAAGAGCGTACTATCAGACTTC
CCAGTTCGTCTAACACGACGACAACGACGTGAAAGAACAAGAAATGGTGT
CAGTAACGACGATTCAATTGAGAAATTTAATCATGTGGTTGATATAGACG
AAGTTGCTCAGAGAGAACTTGAGATTTTGAAGGCTCAGCGAAATGACCGA
TACCACAAGAAGAGAAGGCGGAGGAAACATCGGAGAACGGCGATGAATGC
TTTTTCAGCGGCGACCCTGATAAACGTTATAACAAGTGGATTGACCCAAA
AAGAGTTTCTGGTCTGCGAACGAGACCCACCAGAAGAACTTCGAAGAGCA
ACGACCTTATGTTATCTAAAGAGCGGGTAACTGGGGCAACTGAGAATGAC
ATAAAGTCTTTAGAGGCCTCGACATGGCTAAGGTCAACTTCAACGCCGTA
TGTATACGTTCCGCAACTTGGAGACGATTTAATGTATTTCCCTGGTGGCC
ATATAACAGCGATGGAGGTGTCAAGGTCTTCCGGTCTAGATCCGCTGTTA
GACAACGCTGACTTCAAGAGAAAGGGATTGGAGGTTCTCGACGGATATTT
GTTTTCGACGGATCAGCTGCCTCTTCATTTTCAGGTTGTTGACGTGCACT
GCGATTTCCCGACACTTCTTGCACCGAAAGGGAGAAATGTAGGGTCGCGA
AGAGGTGGGAAAAGACAACCAGATGGGAATGTTGTGAAGCCGAAGACAAA
GTTAATTCTCACGTTACAAATGGTTTCTCCTCCGCGACGACGCTCTGGGC
AATCAACTGCTTTTGTTCTTTCCTATTTTCCTGTCGATGTTCCTGAATAC
CTTGTTTCAACAATTCGAGTCAACGCTGCTCTGAGCCGTACATGGAAACC
TTCAGACCCTTTTCGAATTCTATTCTTAAACGAAAAGAGAGCATGGCAGT
ATTATACAGGCAAGGTGAGATAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1415518..1417190+

>Ggra10341.t1 ID=Ggra10341.t1|Name=Ggra10341.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1329bp|location=Sequence derived from alignment at tig00000016_pilon:1415518..1417190+ (Gracilaria gracilis GNS1m male)
atgatgGAGAGCAAGAAATACGACCAGTGCGTAGAAAAAGGCAAAGAACC
TCTACGAATGAGCAAAGGTGGGCAAGGCCCCGCGGATGACGTTACTGGAG
AGAAATCTGTGGGGCGTCCGGAGTTTGGTGAACAGCCTGAAGTTGACGAG
GTATTGAAGAACTCTCCACAAAATGGAGAGTCCCATTCACTGCTAGAGGC
CTTATCGAATTTCAGTTCTGCTCCAGTGCTCATTGGTGCATCTGCTCAAA
ATCGAAAGCGAAGAATGCGAATATGCACTAGAAACACCCCTTTTCAAGCC
AGATCAGGAGGGTCACGGAAAGGCCACCGTCTTGGTGCTATAGATTACGC
AGCGGACTCACACACAGGGGCGTTACGTCAAGAAAGAAACCATGTCAGAG
GATCTCAAAGCGTTGGTTCATGTTACGGGCACGTCAATCAAACAGAAGCT
GGAGGTAATGTGGTGTCCCAGATTCCACTAAATCCTTCTTTTACGAGCGA
AAGAGTTGACATGAAGGGGGCCAATGAAGCTGTTTTTAAATGTATTGAAG
ACCATCAGGGAGATAAAGAGAAGGCGGAGGAAACATCGGAGAACGGCGAT
GAATGCTTTTTCAGCGGCGACCCTGATAAACGTTATAACAAGTGGATTGA
CCCAAAAAGAGTTTCTGGTCTGCGAACGAGACCCACCAGAAGAACTTCGA
AGAGCAACGACCTTATGTTATCTAAAGAGCGGGTAACTGGGGCAACTGAG
AATGACATAAAGTCTTTAGAGGCCTCGACATGGCTAAGGTCAACTTCAAC
GCCGTATGTATACGTTCCGCAACTTGGAGACGATTTAATGTATTTCCCTG
GTGGCCATATAACAGCGATGGAGGTGTCAAGGTCTTCCGGTCTAGATCCG
CTGTTAGACAACGCTGACTTCAAGAGAAAGGGATTGGAGGTTCTCGACGG
ATATTTGTTTTCGACGGATCAGCTGCCTCTTCATTTTCAGGTTGTTGACG
TGCACTGCGATTTCCCGACACTTCTTGCACCGAAAGGGAGAAATGTAGGG
TCGCGAAGAGGTGGGAAAAGACAACCAGATGGGAATGTTGTGAAGCCGAA
GACAAAGTTAATTCTCACGTTACAAATGGTTTCTCCTCCGCGACGACGCT
CTGGGCAATCAACTGCTTTTGTTCTTTCCTATTTTCCTGTCGATGTTCCT
GAATACCTTGTTTCAACAATTCGAGTCAACGCTGCTCTGAGCCGTACATG
GAAACCTTCAGACCCTTTTCGAATTCTATTCTTAAACGAAAAGAGAGCAT
GGCAGTATTATACAGGCAAGGTGAGATAA
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