Ggra10336.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10336.t1
Unique NameGgra10336.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1332515..1333192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002601947.1
PFAMsSRCR,VWA
Max annot lvl33208|Metazoa
KEGG koko:K13912
KEGG Pathwayko04970,map04970
Evalue3.24e-12
EggNOG OGsKOG2579@1|root,KOG3544@1|root,KOG2579@2759|Eukaryota,KOG3544@2759|Eukaryota,39NMG@33154|Opisthokonta,3CQ5T@33208|Metazoa,3E6B0@33213|Bilateria,48RRQ@7711|Chordata
DescriptionScavenger receptor Cys-rich
COG categoryW
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10336Ggra10336Gracilaria gracilis GNS1m malegenetig00000016_pilon 1332515..1333192 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10336.t1.start1Ggra10336.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1332515..1332517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10336.t1.CDS1Ggra10336.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1332515..1333192 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10336.t1.exon1Ggra10336.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1332515..1333192 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10336.t1.stop1Ggra10336.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1333190..1333192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10336.t1Ggra10336.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1332515..1333192 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10336.t1 ID=Ggra10336.t1|Name=Ggra10336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MKLLVCAIAAALCISAHASVVQELPLTERITASAQAELRRRIAAAGGCNL
NICFAIDGSGSINSTEFTNEKNFVLDVSSVVVDNTVELGAVQYSTSIRTI
TDLTPDSSIFNLLVNSEAQLGGASFVVGGINACFSQLARRPNEPSKIVLL
GDGRSNIGSDAAARADLFRRIGGSVCVVGAGFQDDAELLRIAGNDPSKVF
EVDSFLDVLALERVAEALALRICTQ*
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spliced messenger RNA

>Ggra10336.t1 ID=Ggra10336.t1|Name=Ggra10336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000016_pilon:1332515..1333192+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTACTGGTCTGTGCAATCGCAGCTGCGCTCTGCATCTCCGCTCA
TGCATCCGTTGTACAAGAACTCCCTCTCACTGAACGAATCACAGCTTCAG
CTCAAGCAGAGCTGAGACGCAGGATTGCCGCCGCTGGAGGGTGTAATCTG
AACATCTGCTTTGCTATCGACGGCAGTGGGTCAATCAACTCTACTGAATT
CACCAACGAAAAGAACTTTGTTTTGGACGTCAGTTCTGTGGTTGTGGATA
ACACTGTTGAGCTGGGTGCTGTGCAGTATTCTACTTCCATCCGTACCATT
ACCGACCTCACACCGGATTCCAGTATCTTCAATCTCCTTGTTAACAGTGA
AGCTCAGCTTGGCGGTGCCTCGTTCGTCGTGGGTGGAATCAACGCATGCT
TCTCTCAACTTGCGCGCAGACCTAACGAGCCCTCAAAGATTGTTCTTCTA
GGAGACGGTAGGAGCAATATCGGTTCCGATGCAGCTGCAAGGGCGGATCT
ATTCCGTCGGATTGGAGGTAGTGTTTGTGTGGTAGGTGCCGGCTTCCAGG
ATGACGCCGAGTTGCTGAGGATTGCTGGTAACGACCCTAGCAAGGTGTTC
GAGGTTGATAGTTTCCTCGATGTTCTTGCACTTGAACGAGTGGCCGAAGC
TCTTGCTCTTCGTATCTGCACCCAGTAG
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protein sequence of Ggra10336.t1

>Ggra10336.t1 ID=Ggra10336.t1|Name=Ggra10336.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MKLLVCAIAAALCISAHASVVQELPLTERITASAQAELRRRIAAAGGCNL
NICFAIDGSGSINSTEFTNEKNFVLDVSSVVVDNTVELGAVQYSTSIRTI
TDLTPDSSIFNLLVNSEAQLGGASFVVGGINACFSQLARRPNEPSKIVLL
GDGRSNIGSDAAARADLFRRIGGSVCVVGAGFQDDAELLRIAGNDPSKVF
EVDSFLDVLALERVAEALALRICTQ*
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mRNA from alignment at tig00000016_pilon:1332515..1333192+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10336.t1 ID=Ggra10336.t1|Name=Ggra10336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000016_pilon:1332515..1333192+ (Gracilaria gracilis GNS1m male)
ATGAAGTTACTGGTCTGTGCAATCGCAGCTGCGCTCTGCATCTCCGCTCA
TGCATCCGTTGTACAAGAACTCCCTCTCACTGAACGAATCACAGCTTCAG
CTCAAGCAGAGCTGAGACGCAGGATTGCCGCCGCTGGAGGGTGTAATCTG
AACATCTGCTTTGCTATCGACGGCAGTGGGTCAATCAACTCTACTGAATT
CACCAACGAAAAGAACTTTGTTTTGGACGTCAGTTCTGTGGTTGTGGATA
ACACTGTTGAGCTGGGTGCTGTGCAGTATTCTACTTCCATCCGTACCATT
ACCGACCTCACACCGGATTCCAGTATCTTCAATCTCCTTGTTAACAGTGA
AGCTCAGCTTGGCGGTGCCTCGTTCGTCGTGGGTGGAATCAACGCATGCT
TCTCTCAACTTGCGCGCAGACCTAACGAGCCCTCAAAGATTGTTCTTCTA
GGAGACGGTAGGAGCAATATCGGTTCCGATGCAGCTGCAAGGGCGGATCT
ATTCCGTCGGATTGGAGGTAGTGTTTGTGTGGTAGGTGCCGGCTTCCAGG
ATGACGCCGAGTTGCTGAGGATTGCTGGTAACGACCCTAGCAAGGTGTTC
GAGGTTGATAGTTTCCTCGATGTTCTTGCACTTGAACGAGTGGCCGAAGC
TCTTGCTCTTCGTATCTGCACCCAGTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:1332515..1333192+

>Ggra10336.t1 ID=Ggra10336.t1|Name=Ggra10336.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000016_pilon:1332515..1333192+ (Gracilaria gracilis GNS1m male)
ATGAAGTTACTGGTCTGTGCAATCGCAGCTGCGCTCTGCATCTCCGCTCA
TGCATCCGTTGTACAAGAACTCCCTCTCACTGAACGAATCACAGCTTCAG
CTCAAGCAGAGCTGAGACGCAGGATTGCCGCCGCTGGAGGGTGTAATCTG
AACATCTGCTTTGCTATCGACGGCAGTGGGTCAATCAACTCTACTGAATT
CACCAACGAAAAGAACTTTGTTTTGGACGTCAGTTCTGTGGTTGTGGATA
ACACTGTTGAGCTGGGTGCTGTGCAGTATTCTACTTCCATCCGTACCATT
ACCGACCTCACACCGGATTCCAGTATCTTCAATCTCCTTGTTAACAGTGA
AGCTCAGCTTGGCGGTGCCTCGTTCGTCGTGGGTGGAATCAACGCATGCT
TCTCTCAACTTGCGCGCAGACCTAACGAGCCCTCAAAGATTGTTCTTCTA
GGAGACGGTAGGAGCAATATCGGTTCCGATGCAGCTGCAAGGGCGGATCT
ATTCCGTCGGATTGGAGGTAGTGTTTGTGTGGTAGGTGCCGGCTTCCAGG
ATGACGCCGAGTTGCTGAGGATTGCTGGTAACGACCCTAGCAAGGTGTTC
GAGGTTGATAGTTTCCTCGATGTTCTTGCACTTGAACGAGTGGCCGAAGC
TCTTGCTCTTCGTATCTGCACCCAGTAG
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