Ggra10335.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10335.t1
Unique NameGgra10335.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1330750..1331193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1008457.BAEX01000058_gene398
Preferred namebatA
PFAMsBatA,VWA
Max annot lvl976|Bacteroidetes
KEGG koko:K07114
KEGG TC1.A.13.2.2,1.A.13.2.3
Evalue0.000201
EggNOG OGsCOG2304@1|root,COG2304@2|Bacteria,4NDUC@976|Bacteroidetes,1HWY3@117743|Flavobacteriia,47H4M@76831|Myroides
DescriptionAerotolerance regulator N-terminal
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10335Ggra10335Gracilaria gracilis GNS1m malegenetig00000016_pilon 1330750..1331193 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10335.t1.stop1Ggra10335.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1330750..1330752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10335.t1.CDS1Ggra10335.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1330750..1331193 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10335.t1.exon1Ggra10335.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1330750..1331193 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10335.t1.start1Ggra10335.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1331191..1331193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10335.t1Ggra10335.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1330750..1331193 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10335.t1 ID=Ggra10335.t1|Name=Ggra10335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MAISTYNKRVGLAAVQYGSSVTSISPFTVDRNAFLSDLRDSEQVKSKGTF
IAAGLNYCISEICQRPARKNHIILLGDGNSNVGIDPGERATFFFEFGGEV
IAVGVGNSQNITALMKIAGNNPRRVFSINANSPESDVSAELSDLIFS*
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spliced messenger RNA

>Ggra10335.t1 ID=Ggra10335.t1|Name=Ggra10335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000016_pilon:1330750..1331193- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATATCAACCTATAACAAAAGAGTAGGATTAGCGGCCGTACAGTA
TGGAAGCTCTGTGACATCTATCAGTCCGTTCACGGTGGATCGCAACGCTT
TTCTTTCTGATCTGCGGGACTCTGAACAGGTGAAATCAAAAGGTACGTTT
ATCGCCGCAGGGTTGAACTATTGCATCAGCGAGATCTGTCAAAGGCCTGC
AAGAAAGAACCATATCATACTGCTTGGTGATGGGAACAGTAACGTGGGTA
TCGATCCGGGGGAGAGAGCTACATTCTTCTTCGAGTTTGGAGGTGAGGTT
ATAGCAGTTGGGGTCGGAAACTCTCAGAACATCACAGCTCTAATGAAAAT
AGCTGGCAACAATCCGCGAAGAGTTTTCAGTATCAATGCCAATTCTCCAG
AAAGTGATGTCTCCGCTGAACTTTCAGACTTAATTTTTTCTTGA
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protein sequence of Ggra10335.t1

>Ggra10335.t1 ID=Ggra10335.t1|Name=Ggra10335.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MAISTYNKRVGLAAVQYGSSVTSISPFTVDRNAFLSDLRDSEQVKSKGTF
IAAGLNYCISEICQRPARKNHIILLGDGNSNVGIDPGERATFFFEFGGEV
IAVGVGNSQNITALMKIAGNNPRRVFSINANSPESDVSAELSDLIFS*
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mRNA from alignment at tig00000016_pilon:1330750..1331193-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10335.t1 ID=Ggra10335.t1|Name=Ggra10335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000016_pilon:1330750..1331193- (Gracilaria gracilis GNS1m male)
ATGGCGATATCAACCTATAACAAAAGAGTAGGATTAGCGGCCGTACAGTA
TGGAAGCTCTGTGACATCTATCAGTCCGTTCACGGTGGATCGCAACGCTT
TTCTTTCTGATCTGCGGGACTCTGAACAGGTGAAATCAAAAGGTACGTTT
ATCGCCGCAGGGTTGAACTATTGCATCAGCGAGATCTGTCAAAGGCCTGC
AAGAAAGAACCATATCATACTGCTTGGTGATGGGAACAGTAACGTGGGTA
TCGATCCGGGGGAGAGAGCTACATTCTTCTTCGAGTTTGGAGGTGAGGTT
ATAGCAGTTGGGGTCGGAAACTCTCAGAACATCACAGCTCTAATGAAAAT
AGCTGGCAACAATCCGCGAAGAGTTTTCAGTATCAATGCCAATTCTCCAG
AAAGTGATGTCTCCGCTGAACTTTCAGACTTAATTTTTTCTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1330750..1331193-

>Ggra10335.t1 ID=Ggra10335.t1|Name=Ggra10335.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000016_pilon:1330750..1331193- (Gracilaria gracilis GNS1m male)
ATGGCGATATCAACCTATAACAAAAGAGTAGGATTAGCGGCCGTACAGTA
TGGAAGCTCTGTGACATCTATCAGTCCGTTCACGGTGGATCGCAACGCTT
TTCTTTCTGATCTGCGGGACTCTGAACAGGTGAAATCAAAAGGTACGTTT
ATCGCCGCAGGGTTGAACTATTGCATCAGCGAGATCTGTCAAAGGCCTGC
AAGAAAGAACCATATCATACTGCTTGGTGATGGGAACAGTAACGTGGGTA
TCGATCCGGGGGAGAGAGCTACATTCTTCTTCGAGTTTGGAGGTGAGGTT
ATAGCAGTTGGGGTCGGAAACTCTCAGAACATCACAGCTCTAATGAAAAT
AGCTGGCAACAATCCGCGAAGAGTTTTCAGTATCAATGCCAATTCTCCAG
AAAGTGATGTCTCCGCTGAACTTTCAGACTTAATTTTTTCTTGA
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