Ggra10333.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10333.t1
Unique NameGgra10333.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1283148..1284332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10333Ggra10333Gracilaria gracilis GNS1m malegenetig00000016_pilon 1283148..1284332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10333.t1Ggra10333.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1283148..1284332 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10333.t1.stop1Ggra10333.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1283148..1283150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10333.t1.CDS1Ggra10333.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1283148..1283810 -
Ggra10333.t1.CDS2Ggra10333.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1283909..1284051 -
Ggra10333.t1.CDS3Ggra10333.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1284122..1284332 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10333.t1.exon1Ggra10333.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1283148..1283810 -
Ggra10333.t1.exon2Ggra10333.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 1283909..1284051 -
Ggra10333.t1.exon3Ggra10333.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 1284122..1284332 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10333.t1.intron1Ggra10333.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1283811..1283908 -
Ggra10333.t1.intron2Ggra10333.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1284052..1284121 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10333.t1.start1Ggra10333.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1284330..1284332 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10333.t1 ID=Ggra10333.t1|Name=Ggra10333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MSFVHVRKPPFCAVYLLLTFSVLGCCCSGPNHKEASLKARRTENTPANPN
RQALHVLSLAHKTYQPRISYKELSDESLCTGSEQGPPPCDDAICFDHITL
PSGLSGGSGRCTCRCCNGQDARCEAAVFGGALAYLCQCGHFDPISTEPPG
PDSWTPPPRPVPTDSAGSSFGIADCVETSWLKQHGFGNCLLRERGPSAVL
CIPGLPCATAGHMLRECGVPPSRSCRLRTYAQICEERNDCEEAFVRVSRL
SNTFDWGVIRIEVSKGKRLELTSASVHLESARISTYISYALAYAADWLSV
HGFGAVCDFVILSVLQLGEVRQSLGRTLALHTQNVPSG*
back to top

spliced messenger RNA

>Ggra10333.t1 ID=Ggra10333.t1|Name=Ggra10333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000016_pilon:1283148..1284332- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTCGTTCATGTTAGAAAGCCGCCGTTCTGTGCCGTGTACCTTTT
GCTCACTTTCAGTGTTCTTGGGTGCTGCTGCTCCGGTCCCAATCACAAAG
AAGCATCTTTAAAGGCTCGACGCACAGAAAACACACCCGCTAACCCAAAC
AGACAAGCATTGCATGTCCTCTCACTCGCTCACAAGACATATCAGCCGCG
GATATCGTATAAAGAGTTAAGCGATGAGTCTCTGTGCACTGGTTCCGAGC
AGGGTCCACCACCGTGTGACGATGCTATCTGTTTTGACCACATCACACTC
CCAAGCGGACTCTCGGGTGGTTCGGGCCGATGCACATGTAGATGTTGCAA
TGGCCAAGATGCAAGGTGTGAGGCAGCCGTTTTTGGGGGGGCGTTGGCTT
ATCTCTGCCAGTGTGGCCATTTCGACCCCATATCGACGGAGCCACCTGGA
CCTGATTCATGGACGCCTCCACCAAGACCGGTACCAACTGACTCGGCAGG
ATCCTCCTTCGGCATAGCAGACTGCGTGGAAACGTCGTGGCTCAAGCAAC
ATGGATTTGGGAACTGTTTATTGCGCGAGAGGGGCCCTTCCGCTGTGCTT
TGTATTCCCGGGCTGCCGTGTGCAACCGCGGGTCATATGCTGCGTGAATG
TGGCGTCCCGCCGAGTCGTTCATGCCGTCTGCGCACTTATGCACAGATTT
GTGAGGAAAGGAATGATTGCGAAGAGGCCTTTGTTCGTGTATCTCGATTG
AGCAACACGTTTGACTGGGGTGTGATTCGAATTGAAGTGTCGAAAGGAAA
GAGGTTGGAACTCACCAGCGCGAGTGTGCATCTAGAGAGTGCTCGTATCT
CTACATATATCTCGTATGCTTTGGCATATGCTGCGGACTGGCTAAGTGTT
CACGGGTTTGGGGCAGTATGTGACTTTGTGATACTATCAGTGCTGCAGCT
CGGAGAAGTGAGGCAGTCTTTGGGGAGAACGCTTGCTCTGCACACGCAGA
ATGTGCCGTCGGGCTAG
back to top

protein sequence of Ggra10333.t1

>Ggra10333.t1 ID=Ggra10333.t1|Name=Ggra10333.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MSFVHVRKPPFCAVYLLLTFSVLGCCCSGPNHKEASLKARRTENTPANPN
RQALHVLSLAHKTYQPRISYKELSDESLCTGSEQGPPPCDDAICFDHITL
PSGLSGGSGRCTCRCCNGQDARCEAAVFGGALAYLCQCGHFDPISTEPPG
PDSWTPPPRPVPTDSAGSSFGIADCVETSWLKQHGFGNCLLRERGPSAVL
CIPGLPCATAGHMLRECGVPPSRSCRLRTYAQICEERNDCEEAFVRVSRL
SNTFDWGVIRIEVSKGKRLELTSASVHLESARISTYISYALAYAADWLSV
HGFGAVCDFVILSVLQLGEVRQSLGRTLALHTQNVPSG*
back to top

mRNA from alignment at tig00000016_pilon:1283148..1284332-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10333.t1 ID=Ggra10333.t1|Name=Ggra10333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1185bp|location=Sequence derived from alignment at tig00000016_pilon:1283148..1284332- (Gracilaria gracilis GNS1m male)
ATGTCGTTCGTTCATGTTAGAAAGCCGCCGTTCTGTGCCGTGTACCTTTT
GCTCACTTTCAGTGTTCTTGGGTGCTGCTGCTCCGGTCCCAATCACAAAG
AAGCATCTTTAAAGGCTCGACGCACAGAAAACACACCCGCTAACCCAAAC
AGACAAGCATTGCATGTCCTCTCACTCGCTCACAAGACATATCAGCCGCG
GATATCGTATAGTAAGCTCCTATCTTCATGGCCATATTTGACGTAGTTGA
ATTTCTGACAGGCGCAACATGTATTGCGAAGAAGAGTTAAGCGATGAGTC
TCTGTGCACTGGTTCCGAGCAGGGTCCACCACCGTGTGACGATGCTATCT
GTTTTGACCACATCACACTCCCAAGCGGACTCTCGGGTGGTTCGGGCCGA
TGCACATGTAGATGTTGCAATGGCGTAAGTTTATCTATCTTCTTCACCTT
TCGCCGACTTGCTCAGTCCTTGTCAAAGACAAACAATTAACAATCGGTTG
TTGGACAAAACCCCGGCCACAGCAAGATGCAAGGTGTGAGGCAGCCGTTT
TTGGGGGGGCGTTGGCTTATCTCTGCCAGTGTGGCCATTTCGACCCCATA
TCGACGGAGCCACCTGGACCTGATTCATGGACGCCTCCACCAAGACCGGT
ACCAACTGACTCGGCAGGATCCTCCTTCGGCATAGCAGACTGCGTGGAAA
CGTCGTGGCTCAAGCAACATGGATTTGGGAACTGTTTATTGCGCGAGAGG
GGCCCTTCCGCTGTGCTTTGTATTCCCGGGCTGCCGTGTGCAACCGCGGG
TCATATGCTGCGTGAATGTGGCGTCCCGCCGAGTCGTTCATGCCGTCTGC
GCACTTATGCACAGATTTGTGAGGAAAGGAATGATTGCGAAGAGGCCTTT
GTTCGTGTATCTCGATTGAGCAACACGTTTGACTGGGGTGTGATTCGAAT
TGAAGTGTCGAAAGGAAAGAGGTTGGAACTCACCAGCGCGAGTGTGCATC
TAGAGAGTGCTCGTATCTCTACATATATCTCGTATGCTTTGGCATATGCT
GCGGACTGGCTAAGTGTTCACGGGTTTGGGGCAGTATGTGACTTTGTGAT
ACTATCAGTGCTGCAGCTCGGAGAAGTGAGGCAGTCTTTGGGGAGAACGC
TTGCTCTGCACACGCAGAATGTGCCGTCGGGCTAG
back to top

Coding sequence (CDS) from alignment at tig00000016_pilon:1283148..1284332-

>Ggra10333.t1 ID=Ggra10333.t1|Name=Ggra10333.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000016_pilon:1283148..1284332- (Gracilaria gracilis GNS1m male)
ATGTCGTTCGTTCATGTTAGAAAGCCGCCGTTCTGTGCCGTGTACCTTTT
GCTCACTTTCAGTGTTCTTGGGTGCTGCTGCTCCGGTCCCAATCACAAAG
AAGCATCTTTAAAGGCTCGACGCACAGAAAACACACCCGCTAACCCAAAC
AGACAAGCATTGCATGTCCTCTCACTCGCTCACAAGACATATCAGCCGCG
GATATCGTATAAAGAGTTAAGCGATGAGTCTCTGTGCACTGGTTCCGAGC
AGGGTCCACCACCGTGTGACGATGCTATCTGTTTTGACCACATCACACTC
CCAAGCGGACTCTCGGGTGGTTCGGGCCGATGCACATGTAGATGTTGCAA
TGGCCAAGATGCAAGGTGTGAGGCAGCCGTTTTTGGGGGGGCGTTGGCTT
ATCTCTGCCAGTGTGGCCATTTCGACCCCATATCGACGGAGCCACCTGGA
CCTGATTCATGGACGCCTCCACCAAGACCGGTACCAACTGACTCGGCAGG
ATCCTCCTTCGGCATAGCAGACTGCGTGGAAACGTCGTGGCTCAAGCAAC
ATGGATTTGGGAACTGTTTATTGCGCGAGAGGGGCCCTTCCGCTGTGCTT
TGTATTCCCGGGCTGCCGTGTGCAACCGCGGGTCATATGCTGCGTGAATG
TGGCGTCCCGCCGAGTCGTTCATGCCGTCTGCGCACTTATGCACAGATTT
GTGAGGAAAGGAATGATTGCGAAGAGGCCTTTGTTCGTGTATCTCGATTG
AGCAACACGTTTGACTGGGGTGTGATTCGAATTGAAGTGTCGAAAGGAAA
GAGGTTGGAACTCACCAGCGCGAGTGTGCATCTAGAGAGTGCTCGTATCT
CTACATATATCTCGTATGCTTTGGCATATGCTGCGGACTGGCTAAGTGTT
CACGGGTTTGGGGCAGTATGTGACTTTGTGATACTATCAGTGCTGCAGCT
CGGAGAAGTGAGGCAGTCTTTGGGGAGAACGCTTGCTCTGCACACGCAGA
ATGTGCCGTCGGGCTAG
back to top