Ggra10331.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10331.t1
Unique NameGgra10331.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1277202..1277837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10331Ggra10331Gracilaria gracilis GNS1m malegenetig00000016_pilon 1277202..1277837 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10331.t1.start1Ggra10331.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1277202..1277204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10331.t1.CDS1Ggra10331.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1277202..1277837 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10331.t1.exon1Ggra10331.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1277202..1277837 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10331.t1.stop1Ggra10331.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1277835..1277837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10331.t1Ggra10331.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1277202..1277837 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10331.t1 ID=Ggra10331.t1|Name=Ggra10331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
MTSNKVICSDSAVYRFTFEKEKKLDTHGGTQSCSTVRGATSCAWVKKEGS
TLWLSEQGGPVSLFDKEAFFSKTELFFDIDKNALQLLAKRMAANENTFGY
FFRKNVLLDSVEDVCEFEYDRRQGTSVPNSVAVLLVVIWSTSIGAFCMSC
FVVSRSLYDVSNAFDMVTRTVRPHDDQMYPIQNPAVFLLAEDVGGSGARF
VLRNVDDVGSG*
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spliced messenger RNA

>Ggra10331.t1 ID=Ggra10331.t1|Name=Ggra10331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000016_pilon:1277202..1277837+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCGAACAAGGTTATCTGCAGTGATTCTGCAGTTTATCGGTTTAC
GTTTGAAAAAGAGAAAAAACTTGATACGCATGGTGGGACTCAAAGTTGCT
CAACTGTTCGTGGGGCTACTAGTTGTGCTTGGGTGAAGAAAGAAGGGTCT
ACTTTGTGGTTGAGTGAACAAGGCGGCCCTGTATCTCTATTCGATAAGGA
AGCGTTCTTTAGCAAGACGGAACTGTTCTTCGATATTGACAAAAATGCGT
TACAGCTCCTCGCCAAAAGAATGGCAGCAAACGAGAACACATTCGGTTAC
TTCTTTCGAAAGAACGTCCTGCTAGATTCCGTTGAAGATGTATGCGAATT
TGAGTATGATCGGAGGCAAGGAACAAGCGTTCCTAATTCAGTCGCTGTCT
TGCTGGTGGTGATATGGTCCACGTCAATAGGAGCGTTCTGCATGAGCTGT
TTCGTAGTCAGTAGGTCGCTGTACGATGTTTCGAATGCGTTTGACATGGT
GACCAGAACAGTTCGACCTCACGACGACCAGATGTATCCAATTCAAAACC
CTGCGGTTTTCCTGCTCGCGGAAGACGTCGGTGGTTCTGGCGCGCGTTTC
GTACTGCGCAACGTGGATGACGTCGGCTCAGGATAA
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protein sequence of Ggra10331.t1

>Ggra10331.t1 ID=Ggra10331.t1|Name=Ggra10331.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MTSNKVICSDSAVYRFTFEKEKKLDTHGGTQSCSTVRGATSCAWVKKEGS
TLWLSEQGGPVSLFDKEAFFSKTELFFDIDKNALQLLAKRMAANENTFGY
FFRKNVLLDSVEDVCEFEYDRRQGTSVPNSVAVLLVVIWSTSIGAFCMSC
FVVSRSLYDVSNAFDMVTRTVRPHDDQMYPIQNPAVFLLAEDVGGSGARF
VLRNVDDVGSG*
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mRNA from alignment at tig00000016_pilon:1277202..1277837+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10331.t1 ID=Ggra10331.t1|Name=Ggra10331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000016_pilon:1277202..1277837+ (Gracilaria gracilis GNS1m male)
ATGACTTCGAACAAGGTTATCTGCAGTGATTCTGCAGTTTATCGGTTTAC
GTTTGAAAAAGAGAAAAAACTTGATACGCATGGTGGGACTCAAAGTTGCT
CAACTGTTCGTGGGGCTACTAGTTGTGCTTGGGTGAAGAAAGAAGGGTCT
ACTTTGTGGTTGAGTGAACAAGGCGGCCCTGTATCTCTATTCGATAAGGA
AGCGTTCTTTAGCAAGACGGAACTGTTCTTCGATATTGACAAAAATGCGT
TACAGCTCCTCGCCAAAAGAATGGCAGCAAACGAGAACACATTCGGTTAC
TTCTTTCGAAAGAACGTCCTGCTAGATTCCGTTGAAGATGTATGCGAATT
TGAGTATGATCGGAGGCAAGGAACAAGCGTTCCTAATTCAGTCGCTGTCT
TGCTGGTGGTGATATGGTCCACGTCAATAGGAGCGTTCTGCATGAGCTGT
TTCGTAGTCAGTAGGTCGCTGTACGATGTTTCGAATGCGTTTGACATGGT
GACCAGAACAGTTCGACCTCACGACGACCAGATGTATCCAATTCAAAACC
CTGCGGTTTTCCTGCTCGCGGAAGACGTCGGTGGTTCTGGCGCGCGTTTC
GTACTGCGCAACGTGGATGACGTCGGCTCAGGATAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1277202..1277837+

>Ggra10331.t1 ID=Ggra10331.t1|Name=Ggra10331.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000016_pilon:1277202..1277837+ (Gracilaria gracilis GNS1m male)
ATGACTTCGAACAAGGTTATCTGCAGTGATTCTGCAGTTTATCGGTTTAC
GTTTGAAAAAGAGAAAAAACTTGATACGCATGGTGGGACTCAAAGTTGCT
CAACTGTTCGTGGGGCTACTAGTTGTGCTTGGGTGAAGAAAGAAGGGTCT
ACTTTGTGGTTGAGTGAACAAGGCGGCCCTGTATCTCTATTCGATAAGGA
AGCGTTCTTTAGCAAGACGGAACTGTTCTTCGATATTGACAAAAATGCGT
TACAGCTCCTCGCCAAAAGAATGGCAGCAAACGAGAACACATTCGGTTAC
TTCTTTCGAAAGAACGTCCTGCTAGATTCCGTTGAAGATGTATGCGAATT
TGAGTATGATCGGAGGCAAGGAACAAGCGTTCCTAATTCAGTCGCTGTCT
TGCTGGTGGTGATATGGTCCACGTCAATAGGAGCGTTCTGCATGAGCTGT
TTCGTAGTCAGTAGGTCGCTGTACGATGTTTCGAATGCGTTTGACATGGT
GACCAGAACAGTTCGACCTCACGACGACCAGATGTATCCAATTCAAAACC
CTGCGGTTTTCCTGCTCGCGGAAGACGTCGGTGGTTCTGGCGCGCGTTTC
GTACTGCGCAACGTGGATGACGTCGGCTCAGGATAA
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