Ggra10330.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10330.t1
Unique Name	Ggra10330.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	320

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:1275299..1276258 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10330	Ggra10330	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 1275299..1276258 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10330.t1.start1	Ggra10330.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 1275299..1275301 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10330.t1.CDS1	Ggra10330.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 1275299..1276258 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10330.t1.exon1	Ggra10330.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 1275299..1276258 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10330.t1.stop1	Ggra10330.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 1276256..1276258 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10330.t1	Ggra10330.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 1275299..1276258 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:1275299..1276258+
coding sequence from alignment at tig00000016_pilon:1275299..1276258+

mRNA sequence

>Ggra10330.t1 ID=Ggra10330.t1|Name=Ggra10330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MGELCFADASMLINSELEGRNLDRGKPVSAQRHRKTVFFIVTFSLSFFFC
IELIVGLFLEAEMQQITFAKPCERLGLAEGRFESFQKPLVAHTAVFSCSR
VVGSRIFVHLANSSLIDSEFHCAENPSCEMSAGDTVPQSLKDSKKYCLDL
DLPDTICTFTRLSKDVFSFSEIVSQDRIVDELVFHEVKLFFEPDEQDVIS
ERVLHSALGARMDYDLFLSSIFFSSFSTSCEFPGVKEVTGMPLVVFVLLV
LMWFSSFGLFSFLSLRKRWKIFFFDMGSPMDWAMVRLPGLNDHVDKVVHD
GFVHAKKMEGTRVLYATVS*

spliced messenger RNA

>Ggra10330.t1 ID=Ggra10330.t1|Name=Ggra10330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000016_pilon:1275299..1276258+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAACTATGCTTTGCAGATGCATCGATGCTAATCAATTCGGAACT
GGAAGGTCGAAACTTGGACCGCGGAAAGCCAGTATCAGCTCAGAGGCACC
GCAAAACAGTTTTCTTTATTGTCACCTTTTCCCTTTCATTCTTCTTCTGC
ATAGAACTTATTGTTGGATTGTTCTTGGAGGCAGAGATGCAACAAATTAC
TTTCGCGAAGCCATGCGAGAGACTTGGACTCGCAGAAGGTCGATTCGAGT
CGTTTCAGAAGCCCTTGGTTGCACACACGGCTGTGTTCTCCTGCAGTCGG
GTTGTGGGTTCTCGTATTTTTGTACATCTTGCGAACTCTAGTCTTATCGA
TTCCGAGTTTCACTGTGCAGAGAACCCATCGTGTGAAATGTCTGCAGGCG
ATACAGTTCCACAAAGTCTTAAGGATTCCAAGAAATACTGTTTAGATTTA
GACTTGCCGGATACGATCTGCACCTTCACAAGACTATCCAAGGATGTGTT
TAGCTTCTCAGAAATCGTCAGTCAAGATCGGATTGTAGATGAACTAGTAT
TTCACGAGGTCAAGTTGTTCTTTGAACCTGACGAGCAAGATGTAATTAGC
GAAAGGGTTCTTCATTCAGCTCTCGGCGCCCGCATGGACTACGACTTGTT
TCTTTCCAGTATTTTCTTTAGCTCCTTCTCAACCTCTTGTGAATTCCCCG
GCGTCAAGGAGGTGACGGGAATGCCCTTGGTCGTCTTCGTTCTTTTGGTC
CTGATGTGGTTTTCTTCTTTTGGACTATTTTCCTTTCTTTCGCTGAGAAA
GAGATGGAAAATCTTTTTTTTCGATATGGGAAGCCCTATGGATTGGGCTA
TGGTGCGACTCCCTGGCCTCAACGACCATGTAGACAAAGTCGTCCATGAT
GGTTTTGTTCATGCCAAGAAAATGGAGGGGACCCGAGTGCTTTACGCTAC
AGTATCTTAG

protein sequence of Ggra10330.t1

>Ggra10330.t1 ID=Ggra10330.t1|Name=Ggra10330.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MGELCFADASMLINSELEGRNLDRGKPVSAQRHRKTVFFIVTFSLSFFFC
IELIVGLFLEAEMQQITFAKPCERLGLAEGRFESFQKPLVAHTAVFSCSR
VVGSRIFVHLANSSLIDSEFHCAENPSCEMSAGDTVPQSLKDSKKYCLDL
DLPDTICTFTRLSKDVFSFSEIVSQDRIVDELVFHEVKLFFEPDEQDVIS
ERVLHSALGARMDYDLFLSSIFFSSFSTSCEFPGVKEVTGMPLVVFVLLV
LMWFSSFGLFSFLSLRKRWKIFFFDMGSPMDWAMVRLPGLNDHVDKVVHD
GFVHAKKMEGTRVLYATVS*

mRNA from alignment at tig00000016_pilon:1275299..1276258+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10330.t1 ID=Ggra10330.t1|Name=Ggra10330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000016_pilon:1275299..1276258+ (Gracilaria gracilis GNS1m male)
ATGGGAGAACTATGCTTTGCAGATGCATCGATGCTAATCAATTCGGAACT
GGAAGGTCGAAACTTGGACCGCGGAAAGCCAGTATCAGCTCAGAGGCACC
GCAAAACAGTTTTCTTTATTGTCACCTTTTCCCTTTCATTCTTCTTCTGC
ATAGAACTTATTGTTGGATTGTTCTTGGAGGCAGAGATGCAACAAATTAC
TTTCGCGAAGCCATGCGAGAGACTTGGACTCGCAGAAGGTCGATTCGAGT
CGTTTCAGAAGCCCTTGGTTGCACACACGGCTGTGTTCTCCTGCAGTCGG
GTTGTGGGTTCTCGTATTTTTGTACATCTTGCGAACTCTAGTCTTATCGA
TTCCGAGTTTCACTGTGCAGAGAACCCATCGTGTGAAATGTCTGCAGGCG
ATACAGTTCCACAAAGTCTTAAGGATTCCAAGAAATACTGTTTAGATTTA
GACTTGCCGGATACGATCTGCACCTTCACAAGACTATCCAAGGATGTGTT
TAGCTTCTCAGAAATCGTCAGTCAAGATCGGATTGTAGATGAACTAGTAT
TTCACGAGGTCAAGTTGTTCTTTGAACCTGACGAGCAAGATGTAATTAGC
GAAAGGGTTCTTCATTCAGCTCTCGGCGCCCGCATGGACTACGACTTGTT
TCTTTCCAGTATTTTCTTTAGCTCCTTCTCAACCTCTTGTGAATTCCCCG
GCGTCAAGGAGGTGACGGGAATGCCCTTGGTCGTCTTCGTTCTTTTGGTC
CTGATGTGGTTTTCTTCTTTTGGACTATTTTCCTTTCTTTCGCTGAGAAA
GAGATGGAAAATCTTTTTTTTCGATATGGGAAGCCCTATGGATTGGGCTA
TGGTGCGACTCCCTGGCCTCAACGACCATGTAGACAAAGTCGTCCATGAT
GGTTTTGTTCATGCCAAGAAAATGGAGGGGACCCGAGTGCTTTACGCTAC
AGTATCTTAG

Coding sequence (CDS) from alignment at tig00000016_pilon:1275299..1276258+

>Ggra10330.t1 ID=Ggra10330.t1|Name=Ggra10330.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000016_pilon:1275299..1276258+ (Gracilaria gracilis GNS1m male)
ATGGGAGAACTATGCTTTGCAGATGCATCGATGCTAATCAATTCGGAACT
GGAAGGTCGAAACTTGGACCGCGGAAAGCCAGTATCAGCTCAGAGGCACC
GCAAAACAGTTTTCTTTATTGTCACCTTTTCCCTTTCATTCTTCTTCTGC
ATAGAACTTATTGTTGGATTGTTCTTGGAGGCAGAGATGCAACAAATTAC
TTTCGCGAAGCCATGCGAGAGACTTGGACTCGCAGAAGGTCGATTCGAGT
CGTTTCAGAAGCCCTTGGTTGCACACACGGCTGTGTTCTCCTGCAGTCGG
GTTGTGGGTTCTCGTATTTTTGTACATCTTGCGAACTCTAGTCTTATCGA
TTCCGAGTTTCACTGTGCAGAGAACCCATCGTGTGAAATGTCTGCAGGCG
ATACAGTTCCACAAAGTCTTAAGGATTCCAAGAAATACTGTTTAGATTTA
GACTTGCCGGATACGATCTGCACCTTCACAAGACTATCCAAGGATGTGTT
TAGCTTCTCAGAAATCGTCAGTCAAGATCGGATTGTAGATGAACTAGTAT
TTCACGAGGTCAAGTTGTTCTTTGAACCTGACGAGCAAGATGTAATTAGC
GAAAGGGTTCTTCATTCAGCTCTCGGCGCCCGCATGGACTACGACTTGTT
TCTTTCCAGTATTTTCTTTAGCTCCTTCTCAACCTCTTGTGAATTCCCCG
GCGTCAAGGAGGTGACGGGAATGCCCTTGGTCGTCTTCGTTCTTTTGGTC
CTGATGTGGTTTTCTTCTTTTGGACTATTTTCCTTTCTTTCGCTGAGAAA
GAGATGGAAAATCTTTTTTTTCGATATGGGAAGCCCTATGGATTGGGCTA
TGGTGCGACTCCCTGGCCTCAACGACCATGTAGACAAAGTCGTCCATGAT
GGTTTTGTTCATGCCAAGAAAATGGAGGGGACCCGAGTGCTTTACGCTAC
AGTATCTTAG