Ggra10326.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10326.t1
Unique NameGgra10326.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1211750..1212382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1234409.C683_0825
PFAMsEndonuclea_NS_2
Max annot lvl91061|Bacilli
KEGG koko:K15051
Evalue2.5e-11
EggNOG OGsCOG2169@1|root,COG2169@2|Bacteria,1TR37@1239|Firmicutes,4HJ4Q@91061|Bacilli,4B6AG@81852|Enterococcaceae
DescriptionDNA/RNA non-specific endonuclease
COG categoryF
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10326Ggra10326Gracilaria gracilis GNS1m malegenetig00000016_pilon 1211750..1212382 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10326.t1.start1Ggra10326.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1211750..1211752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10326.t1.CDS1Ggra10326.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1211750..1212382 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10326.t1.exon1Ggra10326.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1211750..1212382 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10326.t1.stop1Ggra10326.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1212380..1212382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10326.t1Ggra10326.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1211750..1212382 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10326.t1 ID=Ggra10326.t1|Name=Ggra10326.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MKCIIFVSLVLSHILTVHAAFLNNSLIRSDDDEFLHTVIHQSAEQRWVDA
FKNCGGSLRLSAHSGIKPAVTITAVIKKACLGIGNGASQFDIYGWDDFKK
AIGNKRKRPGGAPLWARCHIIGRQLGGRGNVYANLFPCWQNKFNTPVMSN
CERVATNAVKAGKTVRYETKLVYGSRNPWPTAIEIKASANGKKMYKVRIE
NTSTAKLTNI*
back to top

spliced messenger RNA

>Ggra10326.t1 ID=Ggra10326.t1|Name=Ggra10326.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000016_pilon:1211750..1212382+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGCATCATCTTTGTGTCGCTCGTCCTGAGCCACATTCTCACCGT
CCACGCCGCCTTCCTCAACAACTCGCTCATCCGCTCTGATGACGACGAAT
TCCTCCACACCGTCATCCACCAGTCAGCCGAGCAAAGGTGGGTGGACGCC
TTCAAGAACTGCGGCGGTAGTTTGAGACTCTCTGCTCACTCGGGCATCAA
GCCCGCCGTCACAATAACCGCAGTCATCAAGAAGGCTTGTCTCGGCATTG
GCAACGGCGCCTCCCAGTTCGACATCTACGGCTGGGACGACTTCAAGAAG
GCCATCGGCAACAAGAGAAAGCGCCCCGGTGGTGCGCCGCTGTGGGCGAG
GTGTCACATCATTGGCAGGCAGCTTGGCGGAAGAGGCAATGTGTACGCAA
ACTTGTTCCCGTGTTGGCAGAACAAGTTTAACACTCCCGTCATGTCCAAC
TGCGAGCGAGTGGCTACCAATGCGGTCAAGGCGGGTAAGACAGTCAGGTA
TGAGACCAAACTAGTTTATGGAAGCCGGAACCCTTGGCCGACCGCTATTG
AGATCAAGGCGTCTGCGAATGGCAAGAAAATGTACAAGGTTAGAATTGAG
AACACTTCTACGGCCAAGCTCACAAACATTTGA
back to top

protein sequence of Ggra10326.t1

>Ggra10326.t1 ID=Ggra10326.t1|Name=Ggra10326.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MKCIIFVSLVLSHILTVHAAFLNNSLIRSDDDEFLHTVIHQSAEQRWVDA
FKNCGGSLRLSAHSGIKPAVTITAVIKKACLGIGNGASQFDIYGWDDFKK
AIGNKRKRPGGAPLWARCHIIGRQLGGRGNVYANLFPCWQNKFNTPVMSN
CERVATNAVKAGKTVRYETKLVYGSRNPWPTAIEIKASANGKKMYKVRIE
NTSTAKLTNI*
back to top

mRNA from alignment at tig00000016_pilon:1211750..1212382+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10326.t1 ID=Ggra10326.t1|Name=Ggra10326.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000016_pilon:1211750..1212382+ (Gracilaria gracilis GNS1m male)
ATGAAGTGCATCATCTTTGTGTCGCTCGTCCTGAGCCACATTCTCACCGT
CCACGCCGCCTTCCTCAACAACTCGCTCATCCGCTCTGATGACGACGAAT
TCCTCCACACCGTCATCCACCAGTCAGCCGAGCAAAGGTGGGTGGACGCC
TTCAAGAACTGCGGCGGTAGTTTGAGACTCTCTGCTCACTCGGGCATCAA
GCCCGCCGTCACAATAACCGCAGTCATCAAGAAGGCTTGTCTCGGCATTG
GCAACGGCGCCTCCCAGTTCGACATCTACGGCTGGGACGACTTCAAGAAG
GCCATCGGCAACAAGAGAAAGCGCCCCGGTGGTGCGCCGCTGTGGGCGAG
GTGTCACATCATTGGCAGGCAGCTTGGCGGAAGAGGCAATGTGTACGCAA
ACTTGTTCCCGTGTTGGCAGAACAAGTTTAACACTCCCGTCATGTCCAAC
TGCGAGCGAGTGGCTACCAATGCGGTCAAGGCGGGTAAGACAGTCAGGTA
TGAGACCAAACTAGTTTATGGAAGCCGGAACCCTTGGCCGACCGCTATTG
AGATCAAGGCGTCTGCGAATGGCAAGAAAATGTACAAGGTTAGAATTGAG
AACACTTCTACGGCCAAGCTCACAAACATTTGA
back to top

Coding sequence (CDS) from alignment at tig00000016_pilon:1211750..1212382+

>Ggra10326.t1 ID=Ggra10326.t1|Name=Ggra10326.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000016_pilon:1211750..1212382+ (Gracilaria gracilis GNS1m male)
ATGAAGTGCATCATCTTTGTGTCGCTCGTCCTGAGCCACATTCTCACCGT
CCACGCCGCCTTCCTCAACAACTCGCTCATCCGCTCTGATGACGACGAAT
TCCTCCACACCGTCATCCACCAGTCAGCCGAGCAAAGGTGGGTGGACGCC
TTCAAGAACTGCGGCGGTAGTTTGAGACTCTCTGCTCACTCGGGCATCAA
GCCCGCCGTCACAATAACCGCAGTCATCAAGAAGGCTTGTCTCGGCATTG
GCAACGGCGCCTCCCAGTTCGACATCTACGGCTGGGACGACTTCAAGAAG
GCCATCGGCAACAAGAGAAAGCGCCCCGGTGGTGCGCCGCTGTGGGCGAG
GTGTCACATCATTGGCAGGCAGCTTGGCGGAAGAGGCAATGTGTACGCAA
ACTTGTTCCCGTGTTGGCAGAACAAGTTTAACACTCCCGTCATGTCCAAC
TGCGAGCGAGTGGCTACCAATGCGGTCAAGGCGGGTAAGACAGTCAGGTA
TGAGACCAAACTAGTTTATGGAAGCCGGAACCCTTGGCCGACCGCTATTG
AGATCAAGGCGTCTGCGAATGGCAAGAAAATGTACAAGGTTAGAATTGAG
AACACTTCTACGGCCAAGCTCACAAACATTTGA
back to top