Ggra10325.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10325.t1
Unique NameGgra10325.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length530
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1209296..1210885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX74666
Preferred nameSVOP
PFAMsMFS_1,Sugar_tr
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008021,GO:0012505,GO:0016020,GO:0016021,GO:0030133,GO:0031224,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044425,GO:0044444,GO:0044456,GO:0044464,GO:0045202,GO:0070382,GO:0097458,GO:0097708,GO:0098793,GO:0099503
Evalue3.51e-101
EggNOG OGsKOG0253@1|root,KOG0253@2759|Eukaryota,38BRT@33154|Opisthokonta,3BCKS@33208|Metazoa,3CUK1@33213|Bilateria,41VI2@6656|Arthropoda
DescriptionTransmembrane transporter activity. It is involved in the biological process described with transmembrane transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10325Ggra10325Gracilaria gracilis GNS1m malegenetig00000016_pilon 1209296..1210885 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10325.t1.stop1Ggra10325.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1209296..1209298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10325.t1.CDS1Ggra10325.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1209296..1210885 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10325.t1.exon1Ggra10325.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1209296..1210885 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10325.t1.start1Ggra10325.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1210883..1210885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10325.t1Ggra10325.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1209296..1210885 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10325.t1 ID=Ggra10325.t1|Name=Ggra10325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=530bp
MTFDEVAPAHEATPLRQPQLQPPPAEDSAAYTVDDAVERLSMGRFQYYLI
FLTGLAWTAESMEMMLLSFIKQPLQCEWRISDARAAVITTAVGLGMLTGA
FFWGRVADRHGRKPAFLLCTLATFAFGVASALAPSYLSLLLWRGLVGFGV
GGLPVSFSLLMEFLPVSRRGRWGMAISLFWALGAIFEAAVAMWVLPRFGW
RALIVASSLPLLLVLLCSLPLLESPRWLASHGRAACAAVVLRRVAALHDA
PLPAGRLAVGGERDTQGGEEGERDATRPLKGSTRDLFLPYVRDVTVKVVV
LWFAAAFTYYGLVMLQPELLAMENAGTRCAYGTARHAARVATAGAGAGAG
ATEASAWCANRLTGADFVSALWGAVGELPGIVACLAVIDALGRRRVLALW
FGTTALVFVLLTACSGRATETALFFVGRGVSAGAFQAVYLFTNELYPAAV
RATAMGVCSGVARTGLMAAPLVAQLLVGVSMRAAMGAFCAVGAAAVAAAL
LVAVETNGRVMLSDVSQMVSLLKHGHAAV*
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spliced messenger RNA

>Ggra10325.t1 ID=Ggra10325.t1|Name=Ggra10325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000016_pilon:1209296..1210885- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTCGACGAAGTCGCGCCCGCGCACGAGGCCACGCCGCTGCGGCA
GCCGCAGCTGCAGCCGCCGCCCGCCGAGGACAGCGCCGCCTACACCGTGG
ACGACGCCGTGGAGCGGCTGTCCATGGGGCGCTTCCAGTATTATCTCATC
TTTCTGACGGGGCTGGCGTGGACGGCCGAGTCGATGGAGATGATGCTGCT
ATCGTTCATCAAGCAGCCGCTGCAATGCGAGTGGCGCATCTCCGACGCGC
GCGCCGCTGTCATCACCACCGCCGTCGGGCTGGGCATGCTCACGGGCGCC
TTCTTCTGGGGGCGAGTGGCCGACCGTCACGGACGCAAGCCTGCGTTCCT
ACTCTGCACGCTGGCCACCTTTGCGTTCGGCGTAGCATCCGCACTAGCGC
CGTCGTACCTCAGCCTGCTGCTGTGGCGCGGGCTGGTGGGCTTTGGCGTG
GGCGGGCTACCGGTATCGTTCTCGCTGCTGATGGAGTTTCTGCCCGTGTC
GCGGCGCGGGCGGTGGGGCATGGCCATCTCGCTGTTCTGGGCGCTGGGCG
CCATCTTCGAGGCGGCGGTGGCCATGTGGGTGCTGCCGCGCTTCGGGTGG
CGCGCGCTCATCGTGGCGTCGTCGCTGCCGCTGTTGCTGGTGCTGCTGTG
CTCGCTGCCGCTGCTGGAGTCGCCGCGCTGGCTGGCGTCGCACGGGCGCG
CCGCGTGCGCCGCCGTCGTGCTGCGCCGCGTGGCCGCGCTGCACGACGCG
CCGCTGCCGGCCGGCCGGCTGGCGGTCGGCGGCGAGCGCGACACGCAAGG
TGGGGAGGAGGGCGAGCGCGATGCGACACGCCCGCTCAAAGGCTCCACGC
GCGACCTGTTCTTGCCGTACGTGCGCGACGTGACGGTGAAGGTGGTGGTG
CTGTGGTTCGCCGCGGCGTTCACGTATTACGGGCTGGTGATGCTGCAGCC
CGAGCTGCTGGCGATGGAGAACGCGGGCACGCGCTGTGCATACGGGACGG
CACGCCACGCTGCGCGCGTCGCCACGGCGGGCGCGGGCGCGGGCGCGGGC
GCGACGGAAGCGTCGGCGTGGTGCGCGAACCGGCTGACGGGCGCGGACTT
TGTGTCGGCGCTGTGGGGCGCGGTGGGCGAGCTGCCGGGCATCGTGGCGT
GCCTGGCGGTGATCGACGCGCTGGGGCGGCGGCGCGTGCTGGCGCTGTGG
TTCGGCACGACGGCGCTGGTGTTCGTGCTGCTGACGGCGTGCAGCGGACG
CGCGACGGAGACGGCGCTGTTCTTCGTGGGGCGCGGCGTGAGCGCGGGCG
CGTTCCAGGCGGTGTACCTGTTCACCAACGAGCTGTACCCCGCGGCGGTG
CGCGCCACCGCCATGGGCGTGTGCTCGGGCGTGGCGCGCACGGGGCTGAT
GGCGGCGCCGCTGGTGGCGCAGCTGCTGGTGGGCGTGTCGATGCGCGCCG
CGATGGGCGCCTTCTGCGCGGTGGGCGCCGCCGCCGTGGCCGCCGCGCTG
CTGGTGGCCGTGGAGACCAACGGGCGCGTGATGCTGAGCGACGTGTCGCA
GATGGTGTCGTTGCTCAAGCATGGCCACGCCGCCGTGTAG
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protein sequence of Ggra10325.t1

>Ggra10325.t1 ID=Ggra10325.t1|Name=Ggra10325.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=530bp
MTFDEVAPAHEATPLRQPQLQPPPAEDSAAYTVDDAVERLSMGRFQYYLI
FLTGLAWTAESMEMMLLSFIKQPLQCEWRISDARAAVITTAVGLGMLTGA
FFWGRVADRHGRKPAFLLCTLATFAFGVASALAPSYLSLLLWRGLVGFGV
GGLPVSFSLLMEFLPVSRRGRWGMAISLFWALGAIFEAAVAMWVLPRFGW
RALIVASSLPLLLVLLCSLPLLESPRWLASHGRAACAAVVLRRVAALHDA
PLPAGRLAVGGERDTQGGEEGERDATRPLKGSTRDLFLPYVRDVTVKVVV
LWFAAAFTYYGLVMLQPELLAMENAGTRCAYGTARHAARVATAGAGAGAG
ATEASAWCANRLTGADFVSALWGAVGELPGIVACLAVIDALGRRRVLALW
FGTTALVFVLLTACSGRATETALFFVGRGVSAGAFQAVYLFTNELYPAAV
RATAMGVCSGVARTGLMAAPLVAQLLVGVSMRAAMGAFCAVGAAAVAAAL
LVAVETNGRVMLSDVSQMVSLLKHGHAAV*
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mRNA from alignment at tig00000016_pilon:1209296..1210885-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10325.t1 ID=Ggra10325.t1|Name=Ggra10325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000016_pilon:1209296..1210885- (Gracilaria gracilis GNS1m male)
ATGACGTTCGACGAAGTCGCGCCCGCGCACGAGGCCACGCCGCTGCGGCA
GCCGCAGCTGCAGCCGCCGCCCGCCGAGGACAGCGCCGCCTACACCGTGG
ACGACGCCGTGGAGCGGCTGTCCATGGGGCGCTTCCAGTATTATCTCATC
TTTCTGACGGGGCTGGCGTGGACGGCCGAGTCGATGGAGATGATGCTGCT
ATCGTTCATCAAGCAGCCGCTGCAATGCGAGTGGCGCATCTCCGACGCGC
GCGCCGCTGTCATCACCACCGCCGTCGGGCTGGGCATGCTCACGGGCGCC
TTCTTCTGGGGGCGAGTGGCCGACCGTCACGGACGCAAGCCTGCGTTCCT
ACTCTGCACGCTGGCCACCTTTGCGTTCGGCGTAGCATCCGCACTAGCGC
CGTCGTACCTCAGCCTGCTGCTGTGGCGCGGGCTGGTGGGCTTTGGCGTG
GGCGGGCTACCGGTATCGTTCTCGCTGCTGATGGAGTTTCTGCCCGTGTC
GCGGCGCGGGCGGTGGGGCATGGCCATCTCGCTGTTCTGGGCGCTGGGCG
CCATCTTCGAGGCGGCGGTGGCCATGTGGGTGCTGCCGCGCTTCGGGTGG
CGCGCGCTCATCGTGGCGTCGTCGCTGCCGCTGTTGCTGGTGCTGCTGTG
CTCGCTGCCGCTGCTGGAGTCGCCGCGCTGGCTGGCGTCGCACGGGCGCG
CCGCGTGCGCCGCCGTCGTGCTGCGCCGCGTGGCCGCGCTGCACGACGCG
CCGCTGCCGGCCGGCCGGCTGGCGGTCGGCGGCGAGCGCGACACGCAAGG
TGGGGAGGAGGGCGAGCGCGATGCGACACGCCCGCTCAAAGGCTCCACGC
GCGACCTGTTCTTGCCGTACGTGCGCGACGTGACGGTGAAGGTGGTGGTG
CTGTGGTTCGCCGCGGCGTTCACGTATTACGGGCTGGTGATGCTGCAGCC
CGAGCTGCTGGCGATGGAGAACGCGGGCACGCGCTGTGCATACGGGACGG
CACGCCACGCTGCGCGCGTCGCCACGGCGGGCGCGGGCGCGGGCGCGGGC
GCGACGGAAGCGTCGGCGTGGTGCGCGAACCGGCTGACGGGCGCGGACTT
TGTGTCGGCGCTGTGGGGCGCGGTGGGCGAGCTGCCGGGCATCGTGGCGT
GCCTGGCGGTGATCGACGCGCTGGGGCGGCGGCGCGTGCTGGCGCTGTGG
TTCGGCACGACGGCGCTGGTGTTCGTGCTGCTGACGGCGTGCAGCGGACG
CGCGACGGAGACGGCGCTGTTCTTCGTGGGGCGCGGCGTGAGCGCGGGCG
CGTTCCAGGCGGTGTACCTGTTCACCAACGAGCTGTACCCCGCGGCGGTG
CGCGCCACCGCCATGGGCGTGTGCTCGGGCGTGGCGCGCACGGGGCTGAT
GGCGGCGCCGCTGGTGGCGCAGCTGCTGGTGGGCGTGTCGATGCGCGCCG
CGATGGGCGCCTTCTGCGCGGTGGGCGCCGCCGCCGTGGCCGCCGCGCTG
CTGGTGGCCGTGGAGACCAACGGGCGCGTGATGCTGAGCGACGTGTCGCA
GATGGTGTCGTTGCTCAAGCATGGCCACGCCGCCGTGTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:1209296..1210885-

>Ggra10325.t1 ID=Ggra10325.t1|Name=Ggra10325.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1590bp|location=Sequence derived from alignment at tig00000016_pilon:1209296..1210885- (Gracilaria gracilis GNS1m male)
ATGACGTTCGACGAAGTCGCGCCCGCGCACGAGGCCACGCCGCTGCGGCA
GCCGCAGCTGCAGCCGCCGCCCGCCGAGGACAGCGCCGCCTACACCGTGG
ACGACGCCGTGGAGCGGCTGTCCATGGGGCGCTTCCAGTATTATCTCATC
TTTCTGACGGGGCTGGCGTGGACGGCCGAGTCGATGGAGATGATGCTGCT
ATCGTTCATCAAGCAGCCGCTGCAATGCGAGTGGCGCATCTCCGACGCGC
GCGCCGCTGTCATCACCACCGCCGTCGGGCTGGGCATGCTCACGGGCGCC
TTCTTCTGGGGGCGAGTGGCCGACCGTCACGGACGCAAGCCTGCGTTCCT
ACTCTGCACGCTGGCCACCTTTGCGTTCGGCGTAGCATCCGCACTAGCGC
CGTCGTACCTCAGCCTGCTGCTGTGGCGCGGGCTGGTGGGCTTTGGCGTG
GGCGGGCTACCGGTATCGTTCTCGCTGCTGATGGAGTTTCTGCCCGTGTC
GCGGCGCGGGCGGTGGGGCATGGCCATCTCGCTGTTCTGGGCGCTGGGCG
CCATCTTCGAGGCGGCGGTGGCCATGTGGGTGCTGCCGCGCTTCGGGTGG
CGCGCGCTCATCGTGGCGTCGTCGCTGCCGCTGTTGCTGGTGCTGCTGTG
CTCGCTGCCGCTGCTGGAGTCGCCGCGCTGGCTGGCGTCGCACGGGCGCG
CCGCGTGCGCCGCCGTCGTGCTGCGCCGCGTGGCCGCGCTGCACGACGCG
CCGCTGCCGGCCGGCCGGCTGGCGGTCGGCGGCGAGCGCGACACGCAAGG
TGGGGAGGAGGGCGAGCGCGATGCGACACGCCCGCTCAAAGGCTCCACGC
GCGACCTGTTCTTGCCGTACGTGCGCGACGTGACGGTGAAGGTGGTGGTG
CTGTGGTTCGCCGCGGCGTTCACGTATTACGGGCTGGTGATGCTGCAGCC
CGAGCTGCTGGCGATGGAGAACGCGGGCACGCGCTGTGCATACGGGACGG
CACGCCACGCTGCGCGCGTCGCCACGGCGGGCGCGGGCGCGGGCGCGGGC
GCGACGGAAGCGTCGGCGTGGTGCGCGAACCGGCTGACGGGCGCGGACTT
TGTGTCGGCGCTGTGGGGCGCGGTGGGCGAGCTGCCGGGCATCGTGGCGT
GCCTGGCGGTGATCGACGCGCTGGGGCGGCGGCGCGTGCTGGCGCTGTGG
TTCGGCACGACGGCGCTGGTGTTCGTGCTGCTGACGGCGTGCAGCGGACG
CGCGACGGAGACGGCGCTGTTCTTCGTGGGGCGCGGCGTGAGCGCGGGCG
CGTTCCAGGCGGTGTACCTGTTCACCAACGAGCTGTACCCCGCGGCGGTG
CGCGCCACCGCCATGGGCGTGTGCTCGGGCGTGGCGCGCACGGGGCTGAT
GGCGGCGCCGCTGGTGGCGCAGCTGCTGGTGGGCGTGTCGATGCGCGCCG
CGATGGGCGCCTTCTGCGCGGTGGGCGCCGCCGCCGTGGCCGCCGCGCTG
CTGGTGGCCGTGGAGACCAACGGGCGCGTGATGCTGAGCGACGTGTCGCA
GATGGTGTCGTTGCTCAAGCATGGCCACGCCGCCGTGTAG
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