Ggra10324.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10324.t1
Unique Name	Ggra10324.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	642

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:1207316..1209241 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1347393.HG726020_gene959
PFAMs	Pyridoxal_deC
Max annot lvl	976\|Bacteroidetes
KEGG rclass	RC00299
KEGG ko	ko:K01593
KEGG Reaction	R00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathway	ko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG Module	M00037,M00042
Evalue	5.61e-199
EggNOG OGs	COG0076@1\|root,COG0076@2\|Bacteria,4PIBD@976\|Bacteroidetes,2FVKM@200643\|Bacteroidia
EC	4.1.1.105,4.1.1.28
Description	Pyridoxal-dependent decarboxylase conserved domain
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10324	Ggra10324	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 1207316..1209241 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10324.t1.start1	Ggra10324.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 1207316..1207318 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10324.t1.CDS1	Ggra10324.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 1207316..1209241 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10324.t1.exon1	Ggra10324.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 1207316..1209241 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10324.t1.stop1	Ggra10324.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 1209239..1209241 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10324.t1	Ggra10324.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 1207316..1209241 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:1207316..1209241+
coding sequence from alignment at tig00000016_pilon:1207316..1209241+

mRNA sequence

>Ggra10324.t1 ID=Ggra10324.t1|Name=Ggra10324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp
MTGPNPPPSKPTGKLKGLFRKDGRPARNAPQWLRVRTSMQNSFPTYYSSD
LDKFAIEIGESVRLLNTLKPPKHGPPFLGDDPSIPDYTDVTNARMEEQPM
PLDDVVQDCVDLFNGMPHWSHPFTMPNVIPPANKAAIIAATLTNIFSPNI
IEGEYAWNVQKAEMESAAIIADLVGWDTTEAGGLYTYGGSGCYLYALKYA
LTQVLGVKSRCNGIRTDGVLLSSQQGHYAKMNASDWCGLGMNNIIDIETD
DDTNEMDVHHLEEVLQDCQQKGIPVISVICTMGTTDAFAVDPVKKVRELV
DKYPNPKGYGRPFIYCDAVIGWSWLFFKGYDFVSNPLQFDDDVVPKLKRN
YERIKNVVYADAIGIDFHKTGWCTYNCSLFAMRDLNHFREMMTRPGSAYL
QERTAYNPGLYTLEVSRSGSYALAGWATLRYFGLSGFRSVLGGILQVQDY
LREQLRDEGSMVCVNEEDHGFVTLLRVYEPGVDAEAQYEREVSDPAALEQ
LKKHNTFQQQIADIMWQWFRSGELIDGLYGAYTSYTSGFRTTDYNDDMSS
DAVVYAIKAFPMNVNITSDTIDKLLVAVKVARDKVLAGETVPEPPRLVGP
PYDQHNPAISCGDEPAEAPKTRVHDLVSGVVGSRAYTRLRR*

spliced messenger RNA

>Ggra10324.t1 ID=Ggra10324.t1|Name=Ggra10324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1926bp|location=Sequence derived from alignment at tig00000016_pilon:1207316..1209241+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGGACCCAACCCGCCGCCGTCCAAGCCAACGGGCAAGCTCAAGGG
CTTGTTCCGCAAAGACGGCCGCCCGGCGCGCAACGCGCCGCAATGGCTTC
GCGTGCGCACCTCCATGCAGAACAGCTTCCCGACGTACTACTCCTCCGAT
CTGGACAAGTTTGCCATCGAGATTGGCGAGTCCGTGCGTCTGCTCAACAC
GCTCAAGCCGCCGAAACACGGCCCGCCCTTCCTGGGCGACGACCCCTCCA
TCCCGGACTACACCGACGTCACGAACGCGCGCATGGAGGAGCAACCCATG
CCGCTGGACGACGTCGTGCAGGATTGCGTCGACCTGTTCAACGGCATGCC
GCATTGGAGTCACCCCTTCACCATGCCCAACGTCATCCCGCCCGCAAACA
AGGCCGCCATCATCGCCGCCACCCTCACCAACATCTTCAGCCCCAACATC
ATCGAGGGCGAGTACGCGTGGAACGTGCAAAAGGCCGAGATGGAGTCGGC
CGCTATCATCGCCGACCTCGTCGGCTGGGATACTACCGAGGCGGGCGGGC
TCTACACGTACGGCGGCTCGGGCTGCTACCTGTACGCGCTCAAGTACGCG
CTCACGCAGGTGCTTGGCGTCAAGTCGCGCTGCAACGGCATTCGTACGGA
CGGCGTGTTGCTGTCGTCGCAGCAGGGGCATTACGCCAAGATGAACGCGT
CGGACTGGTGCGGCCTGGGCATGAACAATATCATCGACATTGAGACGGAC
GACGACACCAACGAGATGGACGTGCACCATCTGGAAGAGGTGCTACAAGA
CTGTCAGCAGAAAGGCATCCCCGTCATCTCGGTGATCTGCACGATGGGTA
CCACCGACGCCTTCGCCGTGGACCCCGTGAAGAAGGTGCGCGAGCTGGTG
GACAAGTACCCAAACCCCAAAGGGTACGGACGGCCCTTCATCTACTGCGA
CGCGGTGATCGGCTGGTCGTGGCTGTTCTTCAAGGGCTACGACTTTGTGT
CCAACCCGCTTCAGTTTGACGACGACGTGGTGCCCAAGCTGAAGCGCAAC
TACGAGCGCATTAAGAACGTGGTGTACGCGGACGCGATCGGCATTGACTT
TCACAAGACCGGCTGGTGCACGTACAACTGCTCCCTGTTCGCCATGCGCG
ATCTGAACCACTTCCGCGAGATGATGACGCGCCCCGGCTCGGCGTACCTG
CAGGAGCGCACTGCGTACAACCCGGGGCTGTACACGTTGGAGGTGTCGCG
CTCGGGGTCGTACGCGCTGGCGGGATGGGCCACGCTGAGGTACTTTGGAC
TGTCGGGCTTCCGCTCCGTGCTGGGCGGCATCCTGCAGGTGCAGGACTAC
CTACGAGAGCAGCTGCGCGACGAAGGCTCCATGGTGTGCGTCAACGAGGA
GGACCACGGCTTTGTGACGCTGCTGCGCGTGTACGAGCCGGGCGTGGACG
CGGAGGCGCAGTATGAACGCGAGGTGAGCGATCCCGCGGCGCTGGAGCAA
CTGAAGAAGCACAACACGTTCCAGCAGCAGATCGCGGACATTATGTGGCA
GTGGTTCCGCAGCGGCGAGCTCATCGACGGGCTGTACGGCGCGTATACGT
CGTACACGTCGGGCTTCCGCACCACGGACTACAACGACGACATGTCGTCC
GACGCGGTGGTGTACGCGATCAAGGCGTTCCCCATGAACGTGAACATCAC
GTCGGACACCATCGACAAGCTGCTGGTGGCGGTGAAGGTGGCGCGCGACA
AGGTGCTGGCCGGCGAGACGGTGCCGGAGCCGCCGCGGCTGGTGGGGCCG
CCGTACGACCAGCACAACCCGGCCATCAGCTGCGGCGACGAGCCGGCCGA
GGCGCCCAAGACGCGCGTGCACGACCTGGTGTCCGGCGTGGTGGGCAGTC
GCGCGTACACGCGCCTGCGCCGCTGA

protein sequence of Ggra10324.t1

>Ggra10324.t1 ID=Ggra10324.t1|Name=Ggra10324.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=642bp
MTGPNPPPSKPTGKLKGLFRKDGRPARNAPQWLRVRTSMQNSFPTYYSSD
LDKFAIEIGESVRLLNTLKPPKHGPPFLGDDPSIPDYTDVTNARMEEQPM
PLDDVVQDCVDLFNGMPHWSHPFTMPNVIPPANKAAIIAATLTNIFSPNI
IEGEYAWNVQKAEMESAAIIADLVGWDTTEAGGLYTYGGSGCYLYALKYA
LTQVLGVKSRCNGIRTDGVLLSSQQGHYAKMNASDWCGLGMNNIIDIETD
DDTNEMDVHHLEEVLQDCQQKGIPVISVICTMGTTDAFAVDPVKKVRELV
DKYPNPKGYGRPFIYCDAVIGWSWLFFKGYDFVSNPLQFDDDVVPKLKRN
YERIKNVVYADAIGIDFHKTGWCTYNCSLFAMRDLNHFREMMTRPGSAYL
QERTAYNPGLYTLEVSRSGSYALAGWATLRYFGLSGFRSVLGGILQVQDY
LREQLRDEGSMVCVNEEDHGFVTLLRVYEPGVDAEAQYEREVSDPAALEQ
LKKHNTFQQQIADIMWQWFRSGELIDGLYGAYTSYTSGFRTTDYNDDMSS
DAVVYAIKAFPMNVNITSDTIDKLLVAVKVARDKVLAGETVPEPPRLVGP
PYDQHNPAISCGDEPAEAPKTRVHDLVSGVVGSRAYTRLRR*

mRNA from alignment at tig00000016_pilon:1207316..1209241+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10324.t1 ID=Ggra10324.t1|Name=Ggra10324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1926bp|location=Sequence derived from alignment at tig00000016_pilon:1207316..1209241+ (Gracilaria gracilis GNS1m male)
ATGACCGGACCCAACCCGCCGCCGTCCAAGCCAACGGGCAAGCTCAAGGG
CTTGTTCCGCAAAGACGGCCGCCCGGCGCGCAACGCGCCGCAATGGCTTC
GCGTGCGCACCTCCATGCAGAACAGCTTCCCGACGTACTACTCCTCCGAT
CTGGACAAGTTTGCCATCGAGATTGGCGAGTCCGTGCGTCTGCTCAACAC
GCTCAAGCCGCCGAAACACGGCCCGCCCTTCCTGGGCGACGACCCCTCCA
TCCCGGACTACACCGACGTCACGAACGCGCGCATGGAGGAGCAACCCATG
CCGCTGGACGACGTCGTGCAGGATTGCGTCGACCTGTTCAACGGCATGCC
GCATTGGAGTCACCCCTTCACCATGCCCAACGTCATCCCGCCCGCAAACA
AGGCCGCCATCATCGCCGCCACCCTCACCAACATCTTCAGCCCCAACATC
ATCGAGGGCGAGTACGCGTGGAACGTGCAAAAGGCCGAGATGGAGTCGGC
CGCTATCATCGCCGACCTCGTCGGCTGGGATACTACCGAGGCGGGCGGGC
TCTACACGTACGGCGGCTCGGGCTGCTACCTGTACGCGCTCAAGTACGCG
CTCACGCAGGTGCTTGGCGTCAAGTCGCGCTGCAACGGCATTCGTACGGA
CGGCGTGTTGCTGTCGTCGCAGCAGGGGCATTACGCCAAGATGAACGCGT
CGGACTGGTGCGGCCTGGGCATGAACAATATCATCGACATTGAGACGGAC
GACGACACCAACGAGATGGACGTGCACCATCTGGAAGAGGTGCTACAAGA
CTGTCAGCAGAAAGGCATCCCCGTCATCTCGGTGATCTGCACGATGGGTA
CCACCGACGCCTTCGCCGTGGACCCCGTGAAGAAGGTGCGCGAGCTGGTG
GACAAGTACCCAAACCCCAAAGGGTACGGACGGCCCTTCATCTACTGCGA
CGCGGTGATCGGCTGGTCGTGGCTGTTCTTCAAGGGCTACGACTTTGTGT
CCAACCCGCTTCAGTTTGACGACGACGTGGTGCCCAAGCTGAAGCGCAAC
TACGAGCGCATTAAGAACGTGGTGTACGCGGACGCGATCGGCATTGACTT
TCACAAGACCGGCTGGTGCACGTACAACTGCTCCCTGTTCGCCATGCGCG
ATCTGAACCACTTCCGCGAGATGATGACGCGCCCCGGCTCGGCGTACCTG
CAGGAGCGCACTGCGTACAACCCGGGGCTGTACACGTTGGAGGTGTCGCG
CTCGGGGTCGTACGCGCTGGCGGGATGGGCCACGCTGAGGTACTTTGGAC
TGTCGGGCTTCCGCTCCGTGCTGGGCGGCATCCTGCAGGTGCAGGACTAC
CTACGAGAGCAGCTGCGCGACGAAGGCTCCATGGTGTGCGTCAACGAGGA
GGACCACGGCTTTGTGACGCTGCTGCGCGTGTACGAGCCGGGCGTGGACG
CGGAGGCGCAGTATGAACGCGAGGTGAGCGATCCCGCGGCGCTGGAGCAA
CTGAAGAAGCACAACACGTTCCAGCAGCAGATCGCGGACATTATGTGGCA
GTGGTTCCGCAGCGGCGAGCTCATCGACGGGCTGTACGGCGCGTATACGT
CGTACACGTCGGGCTTCCGCACCACGGACTACAACGACGACATGTCGTCC
GACGCGGTGGTGTACGCGATCAAGGCGTTCCCCATGAACGTGAACATCAC
GTCGGACACCATCGACAAGCTGCTGGTGGCGGTGAAGGTGGCGCGCGACA
AGGTGCTGGCCGGCGAGACGGTGCCGGAGCCGCCGCGGCTGGTGGGGCCG
CCGTACGACCAGCACAACCCGGCCATCAGCTGCGGCGACGAGCCGGCCGA
GGCGCCCAAGACGCGCGTGCACGACCTGGTGTCCGGCGTGGTGGGCAGTC
GCGCGTACACGCGCCTGCGCCGCTGA

Coding sequence (CDS) from alignment at tig00000016_pilon:1207316..1209241+

>Ggra10324.t1 ID=Ggra10324.t1|Name=Ggra10324.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1926bp|location=Sequence derived from alignment at tig00000016_pilon:1207316..1209241+ (Gracilaria gracilis GNS1m male)
ATGACCGGACCCAACCCGCCGCCGTCCAAGCCAACGGGCAAGCTCAAGGG
CTTGTTCCGCAAAGACGGCCGCCCGGCGCGCAACGCGCCGCAATGGCTTC
GCGTGCGCACCTCCATGCAGAACAGCTTCCCGACGTACTACTCCTCCGAT
CTGGACAAGTTTGCCATCGAGATTGGCGAGTCCGTGCGTCTGCTCAACAC
GCTCAAGCCGCCGAAACACGGCCCGCCCTTCCTGGGCGACGACCCCTCCA
TCCCGGACTACACCGACGTCACGAACGCGCGCATGGAGGAGCAACCCATG
CCGCTGGACGACGTCGTGCAGGATTGCGTCGACCTGTTCAACGGCATGCC
GCATTGGAGTCACCCCTTCACCATGCCCAACGTCATCCCGCCCGCAAACA
AGGCCGCCATCATCGCCGCCACCCTCACCAACATCTTCAGCCCCAACATC
ATCGAGGGCGAGTACGCGTGGAACGTGCAAAAGGCCGAGATGGAGTCGGC
CGCTATCATCGCCGACCTCGTCGGCTGGGATACTACCGAGGCGGGCGGGC
TCTACACGTACGGCGGCTCGGGCTGCTACCTGTACGCGCTCAAGTACGCG
CTCACGCAGGTGCTTGGCGTCAAGTCGCGCTGCAACGGCATTCGTACGGA
CGGCGTGTTGCTGTCGTCGCAGCAGGGGCATTACGCCAAGATGAACGCGT
CGGACTGGTGCGGCCTGGGCATGAACAATATCATCGACATTGAGACGGAC
GACGACACCAACGAGATGGACGTGCACCATCTGGAAGAGGTGCTACAAGA
CTGTCAGCAGAAAGGCATCCCCGTCATCTCGGTGATCTGCACGATGGGTA
CCACCGACGCCTTCGCCGTGGACCCCGTGAAGAAGGTGCGCGAGCTGGTG
GACAAGTACCCAAACCCCAAAGGGTACGGACGGCCCTTCATCTACTGCGA
CGCGGTGATCGGCTGGTCGTGGCTGTTCTTCAAGGGCTACGACTTTGTGT
CCAACCCGCTTCAGTTTGACGACGACGTGGTGCCCAAGCTGAAGCGCAAC
TACGAGCGCATTAAGAACGTGGTGTACGCGGACGCGATCGGCATTGACTT
TCACAAGACCGGCTGGTGCACGTACAACTGCTCCCTGTTCGCCATGCGCG
ATCTGAACCACTTCCGCGAGATGATGACGCGCCCCGGCTCGGCGTACCTG
CAGGAGCGCACTGCGTACAACCCGGGGCTGTACACGTTGGAGGTGTCGCG
CTCGGGGTCGTACGCGCTGGCGGGATGGGCCACGCTGAGGTACTTTGGAC
TGTCGGGCTTCCGCTCCGTGCTGGGCGGCATCCTGCAGGTGCAGGACTAC
CTACGAGAGCAGCTGCGCGACGAAGGCTCCATGGTGTGCGTCAACGAGGA
GGACCACGGCTTTGTGACGCTGCTGCGCGTGTACGAGCCGGGCGTGGACG
CGGAGGCGCAGTATGAACGCGAGGTGAGCGATCCCGCGGCGCTGGAGCAA
CTGAAGAAGCACAACACGTTCCAGCAGCAGATCGCGGACATTATGTGGCA
GTGGTTCCGCAGCGGCGAGCTCATCGACGGGCTGTACGGCGCGTATACGT
CGTACACGTCGGGCTTCCGCACCACGGACTACAACGACGACATGTCGTCC
GACGCGGTGGTGTACGCGATCAAGGCGTTCCCCATGAACGTGAACATCAC
GTCGGACACCATCGACAAGCTGCTGGTGGCGGTGAAGGTGGCGCGCGACA
AGGTGCTGGCCGGCGAGACGGTGCCGGAGCCGCCGCGGCTGGTGGGGCCG
CCGTACGACCAGCACAACCCGGCCATCAGCTGCGGCGACGAGCCGGCCGA
GGCGCCCAAGACGCGCGTGCACGACCTGGTGTCCGGCGTGGTGGGCAGTC
GCGCGTACACGCGCCTGCGCCGCTGA