Ggra10322.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10322.t1
Unique NameGgra10322.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1182478..1183632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10322Ggra10322Gracilaria gracilis GNS1m malegenetig00000016_pilon 1182478..1183632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10322.t1Ggra10322.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1182478..1183632 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10322.t1.start1Ggra10322.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1182478..1182480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10322.t1.CDS1Ggra10322.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1182478..1182891 +
Ggra10322.t1.CDS2Ggra10322.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1183030..1183632 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10322.t1.exon1Ggra10322.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1182478..1182891 +
Ggra10322.t1.exon2Ggra10322.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 1183030..1183632 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10322.t1.intron1Ggra10322.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1182892..1183029 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10322.t1.stop1Ggra10322.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1183630..1183632 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10322.t1 ID=Ggra10322.t1|Name=Ggra10322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MFKTPEEREQFHRVFEQASTTDYSLNEIGTDHAFDWQLLVSNIIAALREV
TLLQPEDPGWFLARGFHYTSRTTNRVIRSIANNFDANIRSIAEIVKGKET
GCGIAVFPADVIEGGTRLKIRVESLCHWLNMKITSALLIIDKVLKLQADV
QNGVVVIKDSNNQSLTEEQQIQNDVKRLRESLYKCSLESWVLKPLMSTAG
MKEGSFNEAQVLKALPSFFDDESLRWRSHEIKEETYNISVDYERTIGLVS
SGSELMVFDIPDALAVVADDTGHQFVCDLEFKTMVALQIIQAALEVRNKF
CPLSVVQEVGSNPEMLKIFHDLVHKVTVDYNVFIMLWH*
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spliced messenger RNA

>Ggra10322.t1 ID=Ggra10322.t1|Name=Ggra10322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000016_pilon:1182478..1183632+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAAACCCCAGAAGAACGCGAACAATTTCATCGTGTATTTGAGCA
AGCTTCTACAACTGATTATTCTCTGAATGAGATTGGTACTGACCATGCTT
TTGATTGGCAATTGCTTGTGTCAAATATAATTGCCGCACTGCGGGAAGTT
ACACTCCTTCAGCCGGAAGACCCAGGTTGGTTCCTGGCTCGTGGATTCCA
TTACACATCTCGTACTACTAACAGGGTAATTCGGAGTATTGCGAACAATT
TTGATGCGAATATCAGATCAATAGCAGAGATTGTCAAGGGAAAAGAGACT
GGCTGTGGCATAGCAGTCTTTCCGGCAGACGTGATAGAAGGTGGTACGCG
GTTGAAGATAAGAGTTGAGTCTCTTTGTCATTGGTTGAATATGAAGATTA
CTTCGGCTCTCCTGATAATTGACAAGGTTTTAAAACTACAGGCAGACGTG
CAAAACGGAGTCGTTGTCATTAAGGACAGCAACAATCAGTCTTTGACCGA
AGAGCAACAAATTCAGAATGATGTCAAGAGGTTGAGAGAGTCCTTGTACA
AATGCTCTCTAGAGTCGTGGGTCCTCAAACCTCTTATGAGTACGGCGGGG
ATGAAGGAAGGTTCATTCAATGAGGCTCAAGTTTTGAAGGCTCTCCCGTC
CTTCTTTGACGATGAGAGTTTGCGGTGGCGTTCTCATGAAATCAAGGAGG
AGACATATAACATTAGTGTAGATTACGAGAGAACCATTGGTCTTGTTTCG
TCTGGATCAGAGCTGATGGTTTTTGATATTCCCGATGCTCTGGCAGTCGT
AGCAGATGATACCGGACATCAGTTTGTTTGTGATTTAGAGTTCAAAACAA
TGGTGGCACTGCAAATCATACAAGCGGCTCTGGAAGTTCGCAACAAGTTC
TGCCCTCTATCAGTTGTTCAAGAAGTTGGATCTAATCCAGAAATGTTGAA
GATATTCCACGACTTAGTCCATAAAGTGACTGTTGACTACAATGTCTTCA
TCATGCTCTGGCATTGA
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protein sequence of Ggra10322.t1

>Ggra10322.t1 ID=Ggra10322.t1|Name=Ggra10322.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MFKTPEEREQFHRVFEQASTTDYSLNEIGTDHAFDWQLLVSNIIAALREV
TLLQPEDPGWFLARGFHYTSRTTNRVIRSIANNFDANIRSIAEIVKGKET
GCGIAVFPADVIEGGTRLKIRVESLCHWLNMKITSALLIIDKVLKLQADV
QNGVVVIKDSNNQSLTEEQQIQNDVKRLRESLYKCSLESWVLKPLMSTAG
MKEGSFNEAQVLKALPSFFDDESLRWRSHEIKEETYNISVDYERTIGLVS
SGSELMVFDIPDALAVVADDTGHQFVCDLEFKTMVALQIIQAALEVRNKF
CPLSVVQEVGSNPEMLKIFHDLVHKVTVDYNVFIMLWH*
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mRNA from alignment at tig00000016_pilon:1182478..1183632+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10322.t1 ID=Ggra10322.t1|Name=Ggra10322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000016_pilon:1182478..1183632+ (Gracilaria gracilis GNS1m male)
ATGTTCAAAACCCCAGAAGAACGCGAACAATTTCATCGTGTATTTGAGCA
AGCTTCTACAACTGATTATTCTCTGAATGAGATTGGTACTGACCATGCTT
TTGATTGGCAATTGCTTGTGTCAAATATAATTGCCGCACTGCGGGAAGTT
ACACTCCTTCAGCCGGAAGACCCAGGTTGGTTCCTGGCTCGTGGATTCCA
TTACACATCTCGTACTACTAACAGGGTAATTCGGAGTATTGCGAACAATT
TTGATGCGAATATCAGATCAATAGCAGAGATTGTCAAGGGAAAAGAGACT
GGCTGTGGCATAGCAGTCTTTCCGGCAGACGTGATAGAAGGTGGTACGCG
GTTGAAGATAAGAGTTGAGTCTCTTTGTCATTGGTTGAATATGAAGATTA
CTTCGGCTCTCCTGGTATCTGATTTTGAGGAAGCGAAGTCTTTTCTGCTC
ACGCCAACTGGAGACGAGCTGAGAAACTAGAATAGAGCAGATTTTTTATC
GAAAATGAGCAAGATTGTACAACCCCTTTTGACTTCTCTACAAAAGCCTT
AGATAATTGACAAGGTTTTAAAACTACAGGCAGACGTGCAAAACGGAGTC
GTTGTCATTAAGGACAGCAACAATCAGTCTTTGACCGAAGAGCAACAAAT
TCAGAATGATGTCAAGAGGTTGAGAGAGTCCTTGTACAAATGCTCTCTAG
AGTCGTGGGTCCTCAAACCTCTTATGAGTACGGCGGGGATGAAGGAAGGT
TCATTCAATGAGGCTCAAGTTTTGAAGGCTCTCCCGTCCTTCTTTGACGA
TGAGAGTTTGCGGTGGCGTTCTCATGAAATCAAGGAGGAGACATATAACA
TTAGTGTAGATTACGAGAGAACCATTGGTCTTGTTTCGTCTGGATCAGAG
CTGATGGTTTTTGATATTCCCGATGCTCTGGCAGTCGTAGCAGATGATAC
CGGACATCAGTTTGTTTGTGATTTAGAGTTCAAAACAATGGTGGCACTGC
AAATCATACAAGCGGCTCTGGAAGTTCGCAACAAGTTCTGCCCTCTATCA
GTTGTTCAAGAAGTTGGATCTAATCCAGAAATGTTGAAGATATTCCACGA
CTTAGTCCATAAAGTGACTGTTGACTACAATGTCTTCATCATGCTCTGGC
ATTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1182478..1183632+

>Ggra10322.t1 ID=Ggra10322.t1|Name=Ggra10322.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000016_pilon:1182478..1183632+ (Gracilaria gracilis GNS1m male)
ATGTTCAAAACCCCAGAAGAACGCGAACAATTTCATCGTGTATTTGAGCA
AGCTTCTACAACTGATTATTCTCTGAATGAGATTGGTACTGACCATGCTT
TTGATTGGCAATTGCTTGTGTCAAATATAATTGCCGCACTGCGGGAAGTT
ACACTCCTTCAGCCGGAAGACCCAGGTTGGTTCCTGGCTCGTGGATTCCA
TTACACATCTCGTACTACTAACAGGGTAATTCGGAGTATTGCGAACAATT
TTGATGCGAATATCAGATCAATAGCAGAGATTGTCAAGGGAAAAGAGACT
GGCTGTGGCATAGCAGTCTTTCCGGCAGACGTGATAGAAGGTGGTACGCG
GTTGAAGATAAGAGTTGAGTCTCTTTGTCATTGGTTGAATATGAAGATTA
CTTCGGCTCTCCTGATAATTGACAAGGTTTTAAAACTACAGGCAGACGTG
CAAAACGGAGTCGTTGTCATTAAGGACAGCAACAATCAGTCTTTGACCGA
AGAGCAACAAATTCAGAATGATGTCAAGAGGTTGAGAGAGTCCTTGTACA
AATGCTCTCTAGAGTCGTGGGTCCTCAAACCTCTTATGAGTACGGCGGGG
ATGAAGGAAGGTTCATTCAATGAGGCTCAAGTTTTGAAGGCTCTCCCGTC
CTTCTTTGACGATGAGAGTTTGCGGTGGCGTTCTCATGAAATCAAGGAGG
AGACATATAACATTAGTGTAGATTACGAGAGAACCATTGGTCTTGTTTCG
TCTGGATCAGAGCTGATGGTTTTTGATATTCCCGATGCTCTGGCAGTCGT
AGCAGATGATACCGGACATCAGTTTGTTTGTGATTTAGAGTTCAAAACAA
TGGTGGCACTGCAAATCATACAAGCGGCTCTGGAAGTTCGCAACAAGTTC
TGCCCTCTATCAGTTGTTCAAGAAGTTGGATCTAATCCAGAAATGTTGAA
GATATTCCACGACTTAGTCCATAAAGTGACTGTTGACTACAATGTCTTCA
TCATGCTCTGGCATTGA
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