Ggra10321.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10321.t1
Unique Name	Ggra10321.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	483

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10321	Ggra10321	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 1076090..1079376 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10321.t1	Ggra10321.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 1076090..1079376 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10321.t1.stop1	Ggra10321.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 1076090..1076092 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10321.t1.CDS1	Ggra10321.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 1076090..1076896 -
Ggra10321.t1.CDS2	Ggra10321.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 1077047..1077568 -
Ggra10321.t1.CDS3	Ggra10321.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 1079257..1079376 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10321.t1.exon1	Ggra10321.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 1076090..1076896 -
Ggra10321.t1.exon2	Ggra10321.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 1077047..1077568 -
Ggra10321.t1.exon3	Ggra10321.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 1079257..1079376 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10321.t1.intron1	Ggra10321.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000016_pilon 1076897..1077046 -
Ggra10321.t1.intron2	Ggra10321.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000016_pilon 1077569..1079256 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10321.t1.start1	Ggra10321.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 1079374..1079376 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:1076090..1079376-
coding sequence from alignment at tig00000016_pilon:1076090..1079376-

mRNA sequence

>Ggra10321.t1 ID=Ggra10321.t1|Name=Ggra10321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp
MESVGVCTVRVVSGDGAKEAKVAKALQYCSLLAAACMVVCQQQQQRGAHA
FHAATTPSPLSSVTHATPSSLASHGSSQHQQQQPPPPSVVHTYALPPPPA
AVARKRGRVEMSHATALSGGALNTLSLSAAPPPQPPPQPARLALACSVAP
SAQQPQQQHHSGAPLLHTLHPPLPSFPRSPRNASAANGSTPMYNIALPLP
NPGRAHRFCQACDHINHVRRKLCENCGAPKPSALRSAIGVSSCSSKSPAP
PIRKSSGGGRHSLNATTMKAQRAHLLTMTSSHDDMALLTAPDGTSAAAAA
AAAAAGANANLAAAPIMAEPLMHPRMARLDGGAGVGALGGSCTVATPAAL
SQQHAAFNAPMVTARAFGERLLSPMVGWAPDAARLSAVQQQQHHQQQQQQ
QHQQQQQQQAAPPTSHGAPLYGGGGGGGGADMYGGAGARRVVEEDRGGEY
ARWGAGGEVLDEVRHEDGARFGIDSLMRHNGD*

spliced messenger RNA

>Ggra10321.t1 ID=Ggra10321.t1|Name=Ggra10321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000016_pilon:1076090..1079376- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGTGTTGGAGTTTGCACCGTTCGGGTTGTATCTGGAGATGGAGC
AAAAGAAGCAAAGGTTGCGAAAGCGCTACAGTACTGTTCTCTACTAGCAG
CTGCGTGCATGGTTGTGTGTCAGCAGCAGCAGCAGCGTGGCGCGCATGCG
TTTCACGCCGCCACCACGCCGTCGCCGCTGTCGTCCGTCACGCACGCCAC
GCCCAGCTCACTGGCCTCGCACGGCTCGTCGCAGCATCAACAACAACAAC
CGCCGCCGCCGTCGGTGGTGCATACGTACGCGCTACCGCCGCCACCGGCC
GCCGTGGCGCGCAAGCGCGGGCGCGTGGAGATGAGCCACGCCACGGCGTT
GTCGGGCGGCGCGCTCAACACGCTGTCGCTGTCGGCCGCGCCGCCGCCGC
AGCCGCCGCCGCAGCCGGCGCGACTGGCGCTCGCGTGCAGCGTGGCGCCT
TCCGCACAGCAGCCGCAGCAGCAGCACCACTCGGGCGCGCCGTTGCTGCA
TACGCTGCACCCGCCGTTGCCGTCGTTCCCGCGCTCGCCTAGGAACGCGT
CCGCCGCCAACGGCTCGACGCCCATGTATAATATCGCGCTGCCGTTGCCC
AATCCCGGCCGCGCGCACCGCTTCTGTCAGGCGTGTGATCACATCAACCA
CGTGCGACGCAAGCTGTGCGAGAACTGTGGCGCGCCAAAGCCCAGCGCGC
TGCGATCGGCCATTGGGGTGTCATCGTGCTCGTCCAAGTCGCCCGCACCG
CCCATCCGCAAGAGCTCCGGCGGCGGGCGCCACTCGTTGAACGCCACCAC
CATGAAGGCGCAGCGCGCGCATCTACTGACCATGACGTCGTCGCACGACG
ACATGGCGCTGCTGACGGCGCCGGACGGCACGTCGGCGGCGGCGGCAGCG
GCGGCGGCGGCGGCGGGCGCAAACGCCAACCTGGCCGCGGCGCCCATCAT
GGCCGAGCCGCTCATGCACCCGCGCATGGCGCGCCTGGACGGCGGCGCCG
GCGTGGGCGCGCTGGGCGGCAGCTGCACCGTGGCCACGCCCGCCGCGCTG
TCGCAACAGCACGCGGCGTTCAACGCGCCAATGGTGACGGCGCGCGCGTT
TGGCGAGCGGCTACTGTCGCCCATGGTGGGGTGGGCGCCTGACGCGGCGC
GACTCTCCGCCGTGCAACAGCAGCAGCATCATCAACAGCAACAGCAACAG
CAACATCAACAGCAGCAGCAGCAGCAAGCAGCGCCGCCGACGTCGCACGG
CGCGCCGCTGTACGGCGGCGGCGGCGGCGGCGGCGGCGCGGACATGTACG
GCGGCGCGGGCGCAAGGCGCGTGGTGGAGGAGGATAGGGGCGGCGAGTAC
GCGCGCTGGGGCGCGGGCGGTGAGGTGCTGGACGAGGTGCGACACGAGGA
CGGCGCGCGCTTCGGCATCGACTCGCTGATGAGACACAACGGCGACTAA

protein sequence of Ggra10321.t1

>Ggra10321.t1 ID=Ggra10321.t1|Name=Ggra10321.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=483bp
MESVGVCTVRVVSGDGAKEAKVAKALQYCSLLAAACMVVCQQQQQRGAHA
FHAATTPSPLSSVTHATPSSLASHGSSQHQQQQPPPPSVVHTYALPPPPA
AVARKRGRVEMSHATALSGGALNTLSLSAAPPPQPPPQPARLALACSVAP
SAQQPQQQHHSGAPLLHTLHPPLPSFPRSPRNASAANGSTPMYNIALPLP
NPGRAHRFCQACDHINHVRRKLCENCGAPKPSALRSAIGVSSCSSKSPAP
PIRKSSGGGRHSLNATTMKAQRAHLLTMTSSHDDMALLTAPDGTSAAAAA
AAAAAGANANLAAAPIMAEPLMHPRMARLDGGAGVGALGGSCTVATPAAL
SQQHAAFNAPMVTARAFGERLLSPMVGWAPDAARLSAVQQQQHHQQQQQQ
QHQQQQQQQAAPPTSHGAPLYGGGGGGGGADMYGGAGARRVVEEDRGGEY
ARWGAGGEVLDEVRHEDGARFGIDSLMRHNGD*

mRNA from alignment at tig00000016_pilon:1076090..1079376-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10321.t1 ID=Ggra10321.t1|Name=Ggra10321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3287bp|location=Sequence derived from alignment at tig00000016_pilon:1076090..1079376- (Gracilaria gracilis GNS1m male)
ATGGAGAGTGTTGGAGTTTGCACCGTTCGGGTTGTATCTGGAGATGGAGC
AAAAGAAGCAAAGGTTGCGAAAGCGCTACAGTACTGTTCTCTACTAGCAG
CTGCGTGCATGGTTGTGTGTGTATGTAACTAATAGCAAACAGTGTAGGCG
TTGAGACAAGTAGAGAAAAAGAGTTTTATGCGTTGAAATGGTTTTTGATT
TGGTTTATATGTTTAGTAATTGTAAAGGAGTTTCAGGTTGGCAGCAGATG
GCGGTGGAGGTATGATTGCTGAAAAACGATCCAGCGGCTCAATGAGCGCT
GTACATTATTGATAAATGTTATATAGCGAGCTGTGCATAGTAATACGAGT
ATAATATGTAACTATGATTGACATGGATGTGTTGTTATAAATTTGGGTGT
TCAAACGCAAATATTAGTATAACATGTTGAGAAAAGTGATTTATTGACAA
GCTGTTGTGAGCTGCTACTAGAGAGATGCAGGGGAGAAGGCGGTTTTGGT
TTTATGATTAAAAGTGTGACCAAATGGCAATGGAAAAAACAAAGATACAA
CAGCAAGCAAATGGACCATTGCAGTTAGCAGTTGGGCGCTATAAAACAGC
ACCACCAAATATATCGAAAAAGCGGAAGCCAACTGCCCGCACCATTTTAG
CATCCGGCGGCGCCGTCTCGCGCGCACGTGGCACGCGTGTGCCACGTTTG
CAGCGACCCACGCGCTGTTGTTAGGCGCTGATTGGGAGCGCGCCGTACAG
CTGTACGGGCTGTATGTTTGCGCGCAATTAGCCGCGCGCCGGGCGCGCCT
GCAGCGGCGTGTAAACGCGCGCGCGAGCGCGCGTTGCGGAGAAACGCTGC
GCGCGCGCCCAAAAAGAAAAAAAGCGCACAAAAAAGGCGGCGCGTAGAAA
GTGCGCGCGCCTTTCGGATGATGAGGTACTAAACCGGCTGTAAGCGGCGG
CGCCCGCTCTTGGTGAATAAAAAGCGCCCAAAAGTTGCAAAACTGCGCCC
CCCACCCCGCCGCCGCCGCCCGCGCGCCGCCGCAACGCAACGCAACGCAA
CGCGTCGCAGTTTGGCGCGGCGCGCGCGCACACGCGCACACGCGCACACA
CGCACGCGCGCGCGCGCGCGCCGCCTGCGCGCGCCACACGCGCACACACA
CGCGCATCGCCGTCGCGCTTGTCGTGGCACCTTAAAACAACCGCGCCGCG
CCGCACGCGCCGCGCGCCCGCGTCCTCCCCGCCGCTCGCCCCCCGCCCCC
CGCGCGCGCCACCGCCCCACGCCACGCCGTCACAAAGTCGCCGCCTCGTT
CCGTTCGTTCGTTCGTTCACCCGCAGCCGCGCGCGAGAAGATGCAGCCGC
ACCGAGCGCCGGCGCGCGCGTCCACGCGGCGCGACGCCGCGCTGTCCAGC
GCGCCCGCCACGCCGGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGC
CGCCGCCGCCGCCGCGTACCCCGCCGCGCCCGGCTCGGCGCCGCCCGCGC
CGCCTTCCACCGCGTACGCCTTTCATGCCGCCGCCGCCGCCGCCTCCGCG
CCCGCGCCGCCGTACCACGTGCCGCACGGCTCGCACGCCGCCGCCGCCGC
GCACTACCTGCCGCTGCCGCACGCGCCGCCGCTGTCGCAGCCGCTGCATG
CGCCGCCGCTGCATGCGCCGCCGCCTCTGTTGCACGCGTCGCCTCCGCCG
CCGCCGCCGCTGCACCACCACGTGCAGCAACTGCAACGACACCACCAGCA
GCAGCAGCAGCAGCACGACCAGCAACAACAACAACAACAACAACAACAAC
AACAGCAGCAGCAGCAGCAGCAGCGTGGCGCGCATGCGTTTCACGCCGCC
ACCACGCCGTCGCCGCTGTCGTCCGTCACGCACGCCACGCCCAGCTCACT
GGCCTCGCACGGCTCGTCGCAGCATCAACAACAACAACCGCCGCCGCCGT
CGGTGGTGCATACGTACGCGCTACCGCCGCCACCGGCCGCCGTGGCGCGC
AAGCGCGGGCGCGTGGAGATGAGCCACGCCACGGCGTTGTCGGGCGGCGC
GCTCAACACGCTGTCGCTGTCGGCCGCGCCGCCGCCGCAGCCGCCGCCGC
AGCCGGCGCGACTGGCGCTCGCGTGCAGCGTGGCGCCTTCCGCACAGCAG
CCGCAGCAGCAGCACCACTCGGGCGCGCCGTTGCTGCATACGCTGCACCC
GCCGTTGCCGTCGTTCCCGCGCTCGCCTAGGAACGCGTCCGCCGCCAACG
GCTCGACGCCCATGTATAATATCGCGCTGCCGTTGCCCAATCCCGGCCGC
GCGCACCGCTTCTGTCAGGCGTGTGATCACGTAAGTTTTGAGCGCGCCGA
CGCGTTTCGCGTGATTGAGAGAGAGAGAGAGAGAGAGCGAGCCGTCATAC
GAGTTTTATTATTGCTGAGTGTGTGTATAGCTAACCGCCCCCCGCACCCG
ACTGTGTATGTGTTTTGTTTGTGTGAGCAGATCAACCACGTGCGACGCAA
GCTGTGCGAGAACTGTGGCGCGCCAAAGCCCAGCGCGCTGCGATCGGCCA
TTGGGGTGTCATCGTGCTCGTCCAAGTCGCCCGCACCGCCCATCCGCAAG
AGCTCCGGCGGCGGGCGCCACTCGTTGAACGCCACCACCATGAAGGCGCA
GCGCGCGCATCTACTGACCATGACGTCGTCGCACGACGACATGGCGCTGC
TGACGGCGCCGGACGGCACGTCGGCGGCGGCGGCAGCGGCGGCGGCGGCG
GCGGGCGCAAACGCCAACCTGGCCGCGGCGCCCATCATGGCCGAGCCGCT
CATGCACCCGCGCATGGCGCGCCTGGACGGCGGCGCCGGCGTGGGCGCGC
TGGGCGGCAGCTGCACCGTGGCCACGCCCGCCGCGCTGTCGCAACAGCAC
GCGGCGTTCAACGCGCCAATGGTGACGGCGCGCGCGTTTGGCGAGCGGCT
ACTGTCGCCCATGGTGGGGTGGGCGCCTGACGCGGCGCGACTCTCCGCCG
TGCAACAGCAGCAGCATCATCAACAGCAACAGCAACAGCAACATCAACAG
CAGCAGCAGCAGCAAGCAGCGCCGCCGACGTCGCACGGCGCGCCGCTGTA
CGGCGGCGGCGGCGGCGGCGGCGGCGCGGACATGTACGGCGGCGCGGGCG
CAAGGCGCGTGGTGGAGGAGGATAGGGGCGGCGAGTACGCGCGCTGGGGC
GCGGGCGGTGAGGTGCTGGACGAGGTGCGACACGAGGACGGCGCGCGCTT
CGGCATCGACTCGCTGATGAGACACAACGGCGACTAA

Coding sequence (CDS) from alignment at tig00000016_pilon:1076090..1079376-

>Ggra10321.t1 ID=Ggra10321.t1|Name=Ggra10321.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000016_pilon:1076090..1079376- (Gracilaria gracilis GNS1m male)
ATGGAGAGTGTTGGAGTTTGCACCGTTCGGGTTGTATCTGGAGATGGAGC
AAAAGAAGCAAAGGTTGCGAAAGCGCTACAGTACTGTTCTCTACTAGCAG
CTGCGTGCATGGTTGTGTGTCAGCAGCAGCAGCAGCGTGGCGCGCATGCG
TTTCACGCCGCCACCACGCCGTCGCCGCTGTCGTCCGTCACGCACGCCAC
GCCCAGCTCACTGGCCTCGCACGGCTCGTCGCAGCATCAACAACAACAAC
CGCCGCCGCCGTCGGTGGTGCATACGTACGCGCTACCGCCGCCACCGGCC
GCCGTGGCGCGCAAGCGCGGGCGCGTGGAGATGAGCCACGCCACGGCGTT
GTCGGGCGGCGCGCTCAACACGCTGTCGCTGTCGGCCGCGCCGCCGCCGC
AGCCGCCGCCGCAGCCGGCGCGACTGGCGCTCGCGTGCAGCGTGGCGCCT
TCCGCACAGCAGCCGCAGCAGCAGCACCACTCGGGCGCGCCGTTGCTGCA
TACGCTGCACCCGCCGTTGCCGTCGTTCCCGCGCTCGCCTAGGAACGCGT
CCGCCGCCAACGGCTCGACGCCCATGTATAATATCGCGCTGCCGTTGCCC
AATCCCGGCCGCGCGCACCGCTTCTGTCAGGCGTGTGATCACATCAACCA
CGTGCGACGCAAGCTGTGCGAGAACTGTGGCGCGCCAAAGCCCAGCGCGC
TGCGATCGGCCATTGGGGTGTCATCGTGCTCGTCCAAGTCGCCCGCACCG
CCCATCCGCAAGAGCTCCGGCGGCGGGCGCCACTCGTTGAACGCCACCAC
CATGAAGGCGCAGCGCGCGCATCTACTGACCATGACGTCGTCGCACGACG
ACATGGCGCTGCTGACGGCGCCGGACGGCACGTCGGCGGCGGCGGCAGCG
GCGGCGGCGGCGGCGGGCGCAAACGCCAACCTGGCCGCGGCGCCCATCAT
GGCCGAGCCGCTCATGCACCCGCGCATGGCGCGCCTGGACGGCGGCGCCG
GCGTGGGCGCGCTGGGCGGCAGCTGCACCGTGGCCACGCCCGCCGCGCTG
TCGCAACAGCACGCGGCGTTCAACGCGCCAATGGTGACGGCGCGCGCGTT
TGGCGAGCGGCTACTGTCGCCCATGGTGGGGTGGGCGCCTGACGCGGCGC
GACTCTCCGCCGTGCAACAGCAGCAGCATCATCAACAGCAACAGCAACAG
CAACATCAACAGCAGCAGCAGCAGCAAGCAGCGCCGCCGACGTCGCACGG
CGCGCCGCTGTACGGCGGCGGCGGCGGCGGCGGCGGCGCGGACATGTACG
GCGGCGCGGGCGCAAGGCGCGTGGTGGAGGAGGATAGGGGCGGCGAGTAC
GCGCGCTGGGGCGCGGGCGGTGAGGTGCTGGACGAGGTGCGACACGAGGA
CGGCGCGCGCTTCGGCATCGACTCGCTGATGAGACACAACGGCGACTAA