Ggra10321.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10321.t1
Unique NameGgra10321.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1076090..1079376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10321Ggra10321Gracilaria gracilis GNS1m malegenetig00000016_pilon 1076090..1079376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10321.t1Ggra10321.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1076090..1079376 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10321.t1.stop1Ggra10321.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1076090..1076092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10321.t1.CDS1Ggra10321.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1076090..1076896 -
Ggra10321.t1.CDS2Ggra10321.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1077047..1077568 -
Ggra10321.t1.CDS3Ggra10321.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1079257..1079376 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10321.t1.exon1Ggra10321.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1076090..1076896 -
Ggra10321.t1.exon2Ggra10321.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 1077047..1077568 -
Ggra10321.t1.exon3Ggra10321.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 1079257..1079376 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10321.t1.intron1Ggra10321.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1076897..1077046 -
Ggra10321.t1.intron2Ggra10321.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 1077569..1079256 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10321.t1.start1Ggra10321.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1079374..1079376 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10321.t1 ID=Ggra10321.t1|Name=Ggra10321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp
MESVGVCTVRVVSGDGAKEAKVAKALQYCSLLAAACMVVCQQQQQRGAHA
FHAATTPSPLSSVTHATPSSLASHGSSQHQQQQPPPPSVVHTYALPPPPA
AVARKRGRVEMSHATALSGGALNTLSLSAAPPPQPPPQPARLALACSVAP
SAQQPQQQHHSGAPLLHTLHPPLPSFPRSPRNASAANGSTPMYNIALPLP
NPGRAHRFCQACDHINHVRRKLCENCGAPKPSALRSAIGVSSCSSKSPAP
PIRKSSGGGRHSLNATTMKAQRAHLLTMTSSHDDMALLTAPDGTSAAAAA
AAAAAGANANLAAAPIMAEPLMHPRMARLDGGAGVGALGGSCTVATPAAL
SQQHAAFNAPMVTARAFGERLLSPMVGWAPDAARLSAVQQQQHHQQQQQQ
QHQQQQQQQAAPPTSHGAPLYGGGGGGGGADMYGGAGARRVVEEDRGGEY
ARWGAGGEVLDEVRHEDGARFGIDSLMRHNGD*
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spliced messenger RNA

>Ggra10321.t1 ID=Ggra10321.t1|Name=Ggra10321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000016_pilon:1076090..1079376- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGTGTTGGAGTTTGCACCGTTCGGGTTGTATCTGGAGATGGAGC
AAAAGAAGCAAAGGTTGCGAAAGCGCTACAGTACTGTTCTCTACTAGCAG
CTGCGTGCATGGTTGTGTGTCAGCAGCAGCAGCAGCGTGGCGCGCATGCG
TTTCACGCCGCCACCACGCCGTCGCCGCTGTCGTCCGTCACGCACGCCAC
GCCCAGCTCACTGGCCTCGCACGGCTCGTCGCAGCATCAACAACAACAAC
CGCCGCCGCCGTCGGTGGTGCATACGTACGCGCTACCGCCGCCACCGGCC
GCCGTGGCGCGCAAGCGCGGGCGCGTGGAGATGAGCCACGCCACGGCGTT
GTCGGGCGGCGCGCTCAACACGCTGTCGCTGTCGGCCGCGCCGCCGCCGC
AGCCGCCGCCGCAGCCGGCGCGACTGGCGCTCGCGTGCAGCGTGGCGCCT
TCCGCACAGCAGCCGCAGCAGCAGCACCACTCGGGCGCGCCGTTGCTGCA
TACGCTGCACCCGCCGTTGCCGTCGTTCCCGCGCTCGCCTAGGAACGCGT
CCGCCGCCAACGGCTCGACGCCCATGTATAATATCGCGCTGCCGTTGCCC
AATCCCGGCCGCGCGCACCGCTTCTGTCAGGCGTGTGATCACATCAACCA
CGTGCGACGCAAGCTGTGCGAGAACTGTGGCGCGCCAAAGCCCAGCGCGC
TGCGATCGGCCATTGGGGTGTCATCGTGCTCGTCCAAGTCGCCCGCACCG
CCCATCCGCAAGAGCTCCGGCGGCGGGCGCCACTCGTTGAACGCCACCAC
CATGAAGGCGCAGCGCGCGCATCTACTGACCATGACGTCGTCGCACGACG
ACATGGCGCTGCTGACGGCGCCGGACGGCACGTCGGCGGCGGCGGCAGCG
GCGGCGGCGGCGGCGGGCGCAAACGCCAACCTGGCCGCGGCGCCCATCAT
GGCCGAGCCGCTCATGCACCCGCGCATGGCGCGCCTGGACGGCGGCGCCG
GCGTGGGCGCGCTGGGCGGCAGCTGCACCGTGGCCACGCCCGCCGCGCTG
TCGCAACAGCACGCGGCGTTCAACGCGCCAATGGTGACGGCGCGCGCGTT
TGGCGAGCGGCTACTGTCGCCCATGGTGGGGTGGGCGCCTGACGCGGCGC
GACTCTCCGCCGTGCAACAGCAGCAGCATCATCAACAGCAACAGCAACAG
CAACATCAACAGCAGCAGCAGCAGCAAGCAGCGCCGCCGACGTCGCACGG
CGCGCCGCTGTACGGCGGCGGCGGCGGCGGCGGCGGCGCGGACATGTACG
GCGGCGCGGGCGCAAGGCGCGTGGTGGAGGAGGATAGGGGCGGCGAGTAC
GCGCGCTGGGGCGCGGGCGGTGAGGTGCTGGACGAGGTGCGACACGAGGA
CGGCGCGCGCTTCGGCATCGACTCGCTGATGAGACACAACGGCGACTAA
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protein sequence of Ggra10321.t1

>Ggra10321.t1 ID=Ggra10321.t1|Name=Ggra10321.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=483bp
MESVGVCTVRVVSGDGAKEAKVAKALQYCSLLAAACMVVCQQQQQRGAHA
FHAATTPSPLSSVTHATPSSLASHGSSQHQQQQPPPPSVVHTYALPPPPA
AVARKRGRVEMSHATALSGGALNTLSLSAAPPPQPPPQPARLALACSVAP
SAQQPQQQHHSGAPLLHTLHPPLPSFPRSPRNASAANGSTPMYNIALPLP
NPGRAHRFCQACDHINHVRRKLCENCGAPKPSALRSAIGVSSCSSKSPAP
PIRKSSGGGRHSLNATTMKAQRAHLLTMTSSHDDMALLTAPDGTSAAAAA
AAAAAGANANLAAAPIMAEPLMHPRMARLDGGAGVGALGGSCTVATPAAL
SQQHAAFNAPMVTARAFGERLLSPMVGWAPDAARLSAVQQQQHHQQQQQQ
QHQQQQQQQAAPPTSHGAPLYGGGGGGGGADMYGGAGARRVVEEDRGGEY
ARWGAGGEVLDEVRHEDGARFGIDSLMRHNGD*
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mRNA from alignment at tig00000016_pilon:1076090..1079376-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10321.t1 ID=Ggra10321.t1|Name=Ggra10321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3287bp|location=Sequence derived from alignment at tig00000016_pilon:1076090..1079376- (Gracilaria gracilis GNS1m male)
ATGGAGAGTGTTGGAGTTTGCACCGTTCGGGTTGTATCTGGAGATGGAGC
AAAAGAAGCAAAGGTTGCGAAAGCGCTACAGTACTGTTCTCTACTAGCAG
CTGCGTGCATGGTTGTGTGTGTATGTAACTAATAGCAAACAGTGTAGGCG
TTGAGACAAGTAGAGAAAAAGAGTTTTATGCGTTGAAATGGTTTTTGATT
TGGTTTATATGTTTAGTAATTGTAAAGGAGTTTCAGGTTGGCAGCAGATG
GCGGTGGAGGTATGATTGCTGAAAAACGATCCAGCGGCTCAATGAGCGCT
GTACATTATTGATAAATGTTATATAGCGAGCTGTGCATAGTAATACGAGT
ATAATATGTAACTATGATTGACATGGATGTGTTGTTATAAATTTGGGTGT
TCAAACGCAAATATTAGTATAACATGTTGAGAAAAGTGATTTATTGACAA
GCTGTTGTGAGCTGCTACTAGAGAGATGCAGGGGAGAAGGCGGTTTTGGT
TTTATGATTAAAAGTGTGACCAAATGGCAATGGAAAAAACAAAGATACAA
CAGCAAGCAAATGGACCATTGCAGTTAGCAGTTGGGCGCTATAAAACAGC
ACCACCAAATATATCGAAAAAGCGGAAGCCAACTGCCCGCACCATTTTAG
CATCCGGCGGCGCCGTCTCGCGCGCACGTGGCACGCGTGTGCCACGTTTG
CAGCGACCCACGCGCTGTTGTTAGGCGCTGATTGGGAGCGCGCCGTACAG
CTGTACGGGCTGTATGTTTGCGCGCAATTAGCCGCGCGCCGGGCGCGCCT
GCAGCGGCGTGTAAACGCGCGCGCGAGCGCGCGTTGCGGAGAAACGCTGC
GCGCGCGCCCAAAAAGAAAAAAAGCGCACAAAAAAGGCGGCGCGTAGAAA
GTGCGCGCGCCTTTCGGATGATGAGGTACTAAACCGGCTGTAAGCGGCGG
CGCCCGCTCTTGGTGAATAAAAAGCGCCCAAAAGTTGCAAAACTGCGCCC
CCCACCCCGCCGCCGCCGCCCGCGCGCCGCCGCAACGCAACGCAACGCAA
CGCGTCGCAGTTTGGCGCGGCGCGCGCGCACACGCGCACACGCGCACACA
CGCACGCGCGCGCGCGCGCGCCGCCTGCGCGCGCCACACGCGCACACACA
CGCGCATCGCCGTCGCGCTTGTCGTGGCACCTTAAAACAACCGCGCCGCG
CCGCACGCGCCGCGCGCCCGCGTCCTCCCCGCCGCTCGCCCCCCGCCCCC
CGCGCGCGCCACCGCCCCACGCCACGCCGTCACAAAGTCGCCGCCTCGTT
CCGTTCGTTCGTTCGTTCACCCGCAGCCGCGCGCGAGAAGATGCAGCCGC
ACCGAGCGCCGGCGCGCGCGTCCACGCGGCGCGACGCCGCGCTGTCCAGC
GCGCCCGCCACGCCGGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGC
CGCCGCCGCCGCCGCGTACCCCGCCGCGCCCGGCTCGGCGCCGCCCGCGC
CGCCTTCCACCGCGTACGCCTTTCATGCCGCCGCCGCCGCCGCCTCCGCG
CCCGCGCCGCCGTACCACGTGCCGCACGGCTCGCACGCCGCCGCCGCCGC
GCACTACCTGCCGCTGCCGCACGCGCCGCCGCTGTCGCAGCCGCTGCATG
CGCCGCCGCTGCATGCGCCGCCGCCTCTGTTGCACGCGTCGCCTCCGCCG
CCGCCGCCGCTGCACCACCACGTGCAGCAACTGCAACGACACCACCAGCA
GCAGCAGCAGCAGCACGACCAGCAACAACAACAACAACAACAACAACAAC
AACAGCAGCAGCAGCAGCAGCAGCGTGGCGCGCATGCGTTTCACGCCGCC
ACCACGCCGTCGCCGCTGTCGTCCGTCACGCACGCCACGCCCAGCTCACT
GGCCTCGCACGGCTCGTCGCAGCATCAACAACAACAACCGCCGCCGCCGT
CGGTGGTGCATACGTACGCGCTACCGCCGCCACCGGCCGCCGTGGCGCGC
AAGCGCGGGCGCGTGGAGATGAGCCACGCCACGGCGTTGTCGGGCGGCGC
GCTCAACACGCTGTCGCTGTCGGCCGCGCCGCCGCCGCAGCCGCCGCCGC
AGCCGGCGCGACTGGCGCTCGCGTGCAGCGTGGCGCCTTCCGCACAGCAG
CCGCAGCAGCAGCACCACTCGGGCGCGCCGTTGCTGCATACGCTGCACCC
GCCGTTGCCGTCGTTCCCGCGCTCGCCTAGGAACGCGTCCGCCGCCAACG
GCTCGACGCCCATGTATAATATCGCGCTGCCGTTGCCCAATCCCGGCCGC
GCGCACCGCTTCTGTCAGGCGTGTGATCACGTAAGTTTTGAGCGCGCCGA
CGCGTTTCGCGTGATTGAGAGAGAGAGAGAGAGAGAGCGAGCCGTCATAC
GAGTTTTATTATTGCTGAGTGTGTGTATAGCTAACCGCCCCCCGCACCCG
ACTGTGTATGTGTTTTGTTTGTGTGAGCAGATCAACCACGTGCGACGCAA
GCTGTGCGAGAACTGTGGCGCGCCAAAGCCCAGCGCGCTGCGATCGGCCA
TTGGGGTGTCATCGTGCTCGTCCAAGTCGCCCGCACCGCCCATCCGCAAG
AGCTCCGGCGGCGGGCGCCACTCGTTGAACGCCACCACCATGAAGGCGCA
GCGCGCGCATCTACTGACCATGACGTCGTCGCACGACGACATGGCGCTGC
TGACGGCGCCGGACGGCACGTCGGCGGCGGCGGCAGCGGCGGCGGCGGCG
GCGGGCGCAAACGCCAACCTGGCCGCGGCGCCCATCATGGCCGAGCCGCT
CATGCACCCGCGCATGGCGCGCCTGGACGGCGGCGCCGGCGTGGGCGCGC
TGGGCGGCAGCTGCACCGTGGCCACGCCCGCCGCGCTGTCGCAACAGCAC
GCGGCGTTCAACGCGCCAATGGTGACGGCGCGCGCGTTTGGCGAGCGGCT
ACTGTCGCCCATGGTGGGGTGGGCGCCTGACGCGGCGCGACTCTCCGCCG
TGCAACAGCAGCAGCATCATCAACAGCAACAGCAACAGCAACATCAACAG
CAGCAGCAGCAGCAAGCAGCGCCGCCGACGTCGCACGGCGCGCCGCTGTA
CGGCGGCGGCGGCGGCGGCGGCGGCGCGGACATGTACGGCGGCGCGGGCG
CAAGGCGCGTGGTGGAGGAGGATAGGGGCGGCGAGTACGCGCGCTGGGGC
GCGGGCGGTGAGGTGCTGGACGAGGTGCGACACGAGGACGGCGCGCGCTT
CGGCATCGACTCGCTGATGAGACACAACGGCGACTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:1076090..1079376-

>Ggra10321.t1 ID=Ggra10321.t1|Name=Ggra10321.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000016_pilon:1076090..1079376- (Gracilaria gracilis GNS1m male)
ATGGAGAGTGTTGGAGTTTGCACCGTTCGGGTTGTATCTGGAGATGGAGC
AAAAGAAGCAAAGGTTGCGAAAGCGCTACAGTACTGTTCTCTACTAGCAG
CTGCGTGCATGGTTGTGTGTCAGCAGCAGCAGCAGCGTGGCGCGCATGCG
TTTCACGCCGCCACCACGCCGTCGCCGCTGTCGTCCGTCACGCACGCCAC
GCCCAGCTCACTGGCCTCGCACGGCTCGTCGCAGCATCAACAACAACAAC
CGCCGCCGCCGTCGGTGGTGCATACGTACGCGCTACCGCCGCCACCGGCC
GCCGTGGCGCGCAAGCGCGGGCGCGTGGAGATGAGCCACGCCACGGCGTT
GTCGGGCGGCGCGCTCAACACGCTGTCGCTGTCGGCCGCGCCGCCGCCGC
AGCCGCCGCCGCAGCCGGCGCGACTGGCGCTCGCGTGCAGCGTGGCGCCT
TCCGCACAGCAGCCGCAGCAGCAGCACCACTCGGGCGCGCCGTTGCTGCA
TACGCTGCACCCGCCGTTGCCGTCGTTCCCGCGCTCGCCTAGGAACGCGT
CCGCCGCCAACGGCTCGACGCCCATGTATAATATCGCGCTGCCGTTGCCC
AATCCCGGCCGCGCGCACCGCTTCTGTCAGGCGTGTGATCACATCAACCA
CGTGCGACGCAAGCTGTGCGAGAACTGTGGCGCGCCAAAGCCCAGCGCGC
TGCGATCGGCCATTGGGGTGTCATCGTGCTCGTCCAAGTCGCCCGCACCG
CCCATCCGCAAGAGCTCCGGCGGCGGGCGCCACTCGTTGAACGCCACCAC
CATGAAGGCGCAGCGCGCGCATCTACTGACCATGACGTCGTCGCACGACG
ACATGGCGCTGCTGACGGCGCCGGACGGCACGTCGGCGGCGGCGGCAGCG
GCGGCGGCGGCGGCGGGCGCAAACGCCAACCTGGCCGCGGCGCCCATCAT
GGCCGAGCCGCTCATGCACCCGCGCATGGCGCGCCTGGACGGCGGCGCCG
GCGTGGGCGCGCTGGGCGGCAGCTGCACCGTGGCCACGCCCGCCGCGCTG
TCGCAACAGCACGCGGCGTTCAACGCGCCAATGGTGACGGCGCGCGCGTT
TGGCGAGCGGCTACTGTCGCCCATGGTGGGGTGGGCGCCTGACGCGGCGC
GACTCTCCGCCGTGCAACAGCAGCAGCATCATCAACAGCAACAGCAACAG
CAACATCAACAGCAGCAGCAGCAGCAAGCAGCGCCGCCGACGTCGCACGG
CGCGCCGCTGTACGGCGGCGGCGGCGGCGGCGGCGGCGCGGACATGTACG
GCGGCGCGGGCGCAAGGCGCGTGGTGGAGGAGGATAGGGGCGGCGAGTAC
GCGCGCTGGGGCGCGGGCGGTGAGGTGCTGGACGAGGTGCGACACGAGGA
CGGCGCGCGCTTCGGCATCGACTCGCTGATGAGACACAACGGCGACTAA
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