Ggra1032.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1032.t1
Unique NameGgra1032.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:693655..696725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1032Ggra1032Gracilaria gracilis GNS1m malegenetig00000027_pilon 693655..696725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1032.t1Ggra1032.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 693655..696725 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1032.t1.stop1Ggra1032.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 693655..693657 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1032.t1.CDS1Ggra1032.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 693655..693931 -
Ggra1032.t1.CDS2Ggra1032.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000027_pilon 695914..696279 -
Ggra1032.t1.CDS3Ggra1032.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000027_pilon 696502..696725 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1032.t1.exon1Ggra1032.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 693655..693931 -
Ggra1032.t1.exon2Ggra1032.t1.exon2Gracilaria gracilis GNS1m maleexontig00000027_pilon 695914..696279 -
Ggra1032.t1.exon3Ggra1032.t1.exon3Gracilaria gracilis GNS1m maleexontig00000027_pilon 696502..696725 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1032.t1.intron1Ggra1032.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000027_pilon 693932..695913 -
Ggra1032.t1.intron2Ggra1032.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000027_pilon 696280..696501 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1032.t1.start1Ggra1032.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 696723..696725 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1032.t1 ID=Ggra1032.t1|Name=Ggra1032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MGKYTVQQPAECVRMKAVRSANKTDWRYESGWKLHVGTLDNTFNATQRRP
FAQPQQGSLHTPPSGIGLAHLPRLGVPLQSPCFVQGSHSFGFEEGDGATL
RLGDGFAERLDEGDGLGLLLDDGFAERLDEGDGLGLLLGDGLAERLDEGE
GLGLLLSDGFAERLDDGDGRGLLLGDGRAERLDDGDGLRVRLDEGDGLVK
LKVPIDEDGSMGINGNDDTDGCDCADLRADAVARRDALERGENVSMESGS
AEEAVGEERATNVHIAKLEGLVRLHGCTFGDSDRKDRL*
back to top

spliced messenger RNA

>Ggra1032.t1 ID=Ggra1032.t1|Name=Ggra1032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000027_pilon:693655..696725- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAGTACACGGTACAACAGCCAGCTGAGTGTGTGCGCATGAAAGC
GGTGCGATCGGCAAACAAAACAGACTGGCGTTATGAGAGCGGCTGGAAGC
TACACGTAGGGACGCTTGACAATACCTTCAACGCAACGCAACGCAGACCC
TTTGCACAACCCCAGCAAGGATCGTTACACACACCTCCTTCCGGCATAGG
CTTGGCGCACTTGCCACGACTCGGGGTGCCACTACAGTCGCCGTGCTTTG
TGCAGGGCTCGCATAGCTTTGGCTTTGAAGAGGGTGACGGAGCGACGCTG
CGGCTGGGCGATGGCTTTGCGGAGCGGCTAGACGAAGGCGACGGCCTCGG
GCTGTTGCTGGATGATGGCTTTGCGGAGCGACTGGACGAGGGCGACGGTC
TTGGGCTCCTGCTGGGTGATGGCCTTGCGGAGCGGCTGGACGAGGGTGAG
GGCCTTGGGCTGTTGCTGAGCGATGGCTTTGCGGAGCGGCTGGACGACGG
AGATGGTCGAGGGCTGCTGCTGGGCGACGGGCGTGCAGAACGGCTGGATG
ACGGCGACGGACTCAGAGTGCGACTGGACGAAGGCGATGGATTGGTGAAA
CTGAAGGTTCCGATTGATGAAGATGGAAGCATGGGCATCAATGGAAATGA
CGACACTGATGGCTGTGATTGTGCGGATCTCAGAGCTGATGCTGTAGCAC
GCAGAGACGCACTGGAGCGCGGCGAGAATGTCTCAATGGAGTCAGGAAGT
GCGGAGGAGGCTGTTGGGGAAGAGAGAGCCACTAACGTTCACATAGCTAA
GCTTGAAGGCCTTGTGCGGTTGCATGGCTGCACATTTGGTGATTCTGATC
GCAAGGATCGCCTGTGA
back to top

protein sequence of Ggra1032.t1

>Ggra1032.t1 ID=Ggra1032.t1|Name=Ggra1032.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MGKYTVQQPAECVRMKAVRSANKTDWRYESGWKLHVGTLDNTFNATQRRP
FAQPQQGSLHTPPSGIGLAHLPRLGVPLQSPCFVQGSHSFGFEEGDGATL
RLGDGFAERLDEGDGLGLLLDDGFAERLDEGDGLGLLLGDGLAERLDEGE
GLGLLLSDGFAERLDDGDGRGLLLGDGRAERLDDGDGLRVRLDEGDGLVK
LKVPIDEDGSMGINGNDDTDGCDCADLRADAVARRDALERGENVSMESGS
AEEAVGEERATNVHIAKLEGLVRLHGCTFGDSDRKDRL*
back to top

mRNA from alignment at tig00000027_pilon:693655..696725-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1032.t1 ID=Ggra1032.t1|Name=Ggra1032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3071bp|location=Sequence derived from alignment at tig00000027_pilon:693655..696725- (Gracilaria gracilis GNS1m male)
ATGGGCAAGTACACGGTACAACAGCCAGCTGAGTGTGTGCGCATGAAAGC GGTGCGATCGGCAAACAAAACAGACTGGCGTTATGAGAGCGGCTGGAAGC TACACGTAGGGACGCTTGACAATACCTTCAACGCAACGCAACGCAGACCC TTTGCACAACCCCAGCAAGGATCGTTACACACACCTCCTTCCGGCATAGG CTTGGCGCACTTGCCACGACTCGGGTCTGAATCCAATGGCCTGCACACCA GACCATCCAAACTGTCGGCATCATGCACACAATAGCCGCACTTGGGGTTA CGCGCCACGCAGCGATAGTACTTGGAGCATCGTTGGTGAGGCGGACACAT GATACAAGCGTCTCCATTTCCACCGCCGTCAGGATCGCACCACGAGCCGC TGAATAACACTCTTGCGCATCGGTTGGTCTGCAGATGACATTCCAGGGTG CCACTACAGTCGCCGTGCTTTGTGCAGGGCTCGCATAGCTTTGGCTTTGA AGAGGGTGACGGAGCGACGCTGCGGCTGGGCGATGGCTTTGCGGAGCGGC TAGACGAAGGCGACGGCCTCGGGCTGTTGCTGGATGATGGCTTTGCGGAG CGACTGGACGAGGGCGACGGTCTTGGGCTCCTGCTGGGTGATGGCCTTGC GGAGCGGCTGGACGAGGGTGAGGGCCTTGGGCTGTTGCTGAGCGATGGCT TTGCGGAGCGGCTGGACGACGGAGATGGTCGAGGGCTGCTGCTGGGCGAC GGGCGTGCAGAACGGCTGGATGACGGCGACGGACTCAGAGTGCGACTGGA CGAAGGCGATGGGTGCGGACTTCGGCTTGGCGACGGCCTCGGCGTGCGAC TGGACGACGGCGACGGGCGACAGCTATGGCTCGCACTCGGCGACGGCTTT AGCGGCGGCGGCGGCCTCTTACAAGACCCGCGGTGGCACACCAACCCCCT CCGACAAACCCAACACGGGTCATCACAGCGCTTGCCGACCGCCATCGGCA CGGAGCATGTGCCCCTCGCGCAAGCAAGCGCGCGCTGACAACGAACGCCC CTCGAGCAGCGCGCGCACTTGGGTGTCGGCCGATGCGCGCATCGCGCGCT TCGACAAAGCAGCCCGCGCGGACACGCCCATCAAGCGTCGTCGCAGCGCT TTCCGGCCGGCACAGGCACTGCGCAGCGTGCCTTCTCGCACACAGGCGCG CGACGATAATGAGCGGCCTTACCACATCTCGCGCACTTTGCGCGCTTGTT CGGTACGCACGTTCCAAGCCGACACACCAGCCCGCGCGCACACGCGGCGC ACCGGCGCCGGCAAGGGCTTGCTTTGGCGACGCGGCGCACGCAGCGCGGC GACGCGGCGCACGCAGCGCGCACGCCGGCAATGCAGCGCTCGCGCGCAGC GCGCGCGGCTCGAACAGCGCGCACGCAGCGGGGCGTGCATGAGCGACCAC GCGAGCCATTGAGCCGCGAACGCGCCACGCAGCGACCAGAACGACAGACG AGACCGCGCTCGTAGTGCGACGGGTGGCGACACTTGCCGCAGCGACGCTG GCGCGCGGGAGGACGCGGCAGCGACGGCGGACGCTTGCGGGCTGTCGGCG GACGCTTGCGAGTAAACGGCGGACGCTTGCGAGCTGTCGGCGGACGCTTG CGAGCAAACGGCAGCTTGGTGCGAGGCAGCGTGACGCGCGGCGGTGCGGC TTGCGGTGCTGCGGAGAGGAGCGGCGATATTCTCGCCGCGCGGCGGACTG GTGACGGGGCCGCGACGACGACGCGGCTCGCGCGTGGGCTTCGGGGTTGC AAGTGGGCTTCGGCTTGCGCTTGGGCTTCCGGCGCATCAACTTGAATTTT ATTAATTAAATGTGTCAACATTGTGTGACGGCGGCTTGTGACGGCGGCTT GCTCTCCTTGTGCTTGCTGTGCTGGTGGTGCTTTTTCGCGCGCTTCTTGT TCGCGTGGCGCACAAGCGGCAGCGGCCGCGACTGCGACTGCGACCGCGCC TCGCCGTCACAACGCGCCACGGCAGCGCGTCCGCCAGACGCCGGGAGCGC AGCGTCAGCGTCAGCCCCCAACCGCAACCAGCAACAACGCAACCGAGCGC CTGGCGAAAGCAATGACGAGCGAAAGCAATGACGAGCGAAAGCAACGACG AGCCGCACAACAACACCAACGTCTCGGCGAGCGCAGTGCGTTTGCGAAGG GCGCACGAGCGGACGGCACCCCCGGCGGCGTGCCGCATCGCTCGCTCAAG TACGGCGGAGGGGCGCGCCCGCAACAACGAGCGGCGGCGCGCGGTGGAGG TCACACAGCAAGAGTGCTGTGTTTGGCATTGAGCGCGGATGGGAAGCGAG TGCTGTCAGCATCATTGGACAAGACGGTTCGAGTTTGGGACGCGAACAGC GGAGCAGCCGTCGGCAAGCCATTTGTTCATTACGCTCCAGTTGACTATGT GCGAACGGATGCGAATGGTCTGCATATTGTGTCGTACGAATACGGCGGTT ATGGACGACTGTGGGACGTGACAAGCGGCGAGTGCGAAACGGCGAGCTGT GTTTTCTCGTGGACCACAACTCTGCGTCGTCTCGCACTTGCTCACTTTCA TGTTAGTAGAAACAAGCGCGCGCAGAACATTTACCCTATCCGAAGCCATG AGCGAATACTGGCATCGCCAGATACACCCGTGTTTCGAGTTGGAGACACA TTCGTTACCTGGCCGCATGGCCCAATGTCCGTGCCTTTTTGCAAAGTCAT AACGTAGACTAACAACTCTTTTACTCTTTATGACCCGTGTCGAGATTGGT GAAACTGAAGGTTCCGATTGATGAAGATGGAAGCATGGGCATCAATGGAA ATGACGACACTGATGGCTGTGATTGTGCGGATCTCAGAGCTGATGCTGTA GCACGCAGAGACGCACTGGAGCGCGGCGAGAATGTCTCAATGGAGTCAGG AAGTGCGGAGGAGGCTGTTGGGGAAGAGAGAGCCACTAACGTTCACATAG CTAAGCTTGAAGGCCTTGTGCGGTTGCATGGCTGCACATTTGGTGATTCT GATCGCAAGGATCGCCTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000027_pilon:693655..696725-

>Ggra1032.t1 ID=Ggra1032.t1|Name=Ggra1032.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000027_pilon:693655..696725- (Gracilaria gracilis GNS1m male)
ATGGGCAAGTACACGGTACAACAGCCAGCTGAGTGTGTGCGCATGAAAGC
GGTGCGATCGGCAAACAAAACAGACTGGCGTTATGAGAGCGGCTGGAAGC
TACACGTAGGGACGCTTGACAATACCTTCAACGCAACGCAACGCAGACCC
TTTGCACAACCCCAGCAAGGATCGTTACACACACCTCCTTCCGGCATAGG
CTTGGCGCACTTGCCACGACTCGGGGTGCCACTACAGTCGCCGTGCTTTG
TGCAGGGCTCGCATAGCTTTGGCTTTGAAGAGGGTGACGGAGCGACGCTG
CGGCTGGGCGATGGCTTTGCGGAGCGGCTAGACGAAGGCGACGGCCTCGG
GCTGTTGCTGGATGATGGCTTTGCGGAGCGACTGGACGAGGGCGACGGTC
TTGGGCTCCTGCTGGGTGATGGCCTTGCGGAGCGGCTGGACGAGGGTGAG
GGCCTTGGGCTGTTGCTGAGCGATGGCTTTGCGGAGCGGCTGGACGACGG
AGATGGTCGAGGGCTGCTGCTGGGCGACGGGCGTGCAGAACGGCTGGATG
ACGGCGACGGACTCAGAGTGCGACTGGACGAAGGCGATGGATTGGTGAAA
CTGAAGGTTCCGATTGATGAAGATGGAAGCATGGGCATCAATGGAAATGA
CGACACTGATGGCTGTGATTGTGCGGATCTCAGAGCTGATGCTGTAGCAC
GCAGAGACGCACTGGAGCGCGGCGAGAATGTCTCAATGGAGTCAGGAAGT
GCGGAGGAGGCTGTTGGGGAAGAGAGAGCCACTAACGTTCACATAGCTAA
GCTTGAAGGCCTTGTGCGGTTGCATGGCTGCACATTTGGTGATTCTGATC
GCAAGGATCGCCTGTGA
back to top