Ggra10318.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10318.t1
Unique NameGgra10318.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:896483..897223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15724300
PFAMsCalx-beta,EGF,Sushi,VWA
Max annot lvl33208|Metazoa
KEGG koko:K06238
KEGG Pathwayko04151,ko04510,ko04512,ko04974,ko05165,map04151,map04510,map04512,map04974,map05165
Evalue4.18e-08
EggNOG OGsKOG1217@1|root,KOG3544@1|root,KOG1217@2759|Eukaryota,KOG3544@2759|Eukaryota,38DGH@33154|Opisthokonta,3BA28@33208|Metazoa
Descriptioncollagen
COG categoryW
BRITEko00000,ko00001,ko00536,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10318Ggra10318Gracilaria gracilis GNS1m malegenetig00000016_pilon 896483..897223 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10318.t1.stop1Ggra10318.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 896483..896485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10318.t1.CDS1Ggra10318.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 896483..897223 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10318.t1.exon1Ggra10318.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 896483..897223 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10318.t1.start1Ggra10318.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 897221..897223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10318.t1Ggra10318.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 896483..897223 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10318.t1 ID=Ggra10318.t1|Name=Ggra10318.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MFRPLFILFLSLFISLILAEVTTDSAERVIEEVDTPLTDGEAQQAEVDAA
VAIVAATDCNPNICFAIDGSGSMNVTEFQLEKDFVKLVAAIVALDPESKY
AAVQYGLRPAFVSTLTQNADSFLLAVDAAQSLDAPRTFIAPGLGACMRQL
RRARGEPQKIVLLGDGQSNFDSQLPPLDPESIAQSFLASPNNSISAVGVG
NFQDPDMLEDIAGSPDRVFKVAQWLDVIFVLADLVADVCGADAVEF*
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spliced messenger RNA

>Ggra10318.t1 ID=Ggra10318.t1|Name=Ggra10318.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000016_pilon:896483..897223- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGCCCTCTTTTCATTCTCTTCCTTTCTCTGTTCATCTCGCTGAT
TCTCGCCGAAGTGACAACTGACAGCGCAGAACGTGTCATTGAGGAAGTCG
ATACCCCTCTGACTGATGGCGAAGCCCAGCAGGCCGAAGTTGATGCCGCC
GTTGCCATTGTGGCCGCCACCGACTGCAACCCCAACATCTGCTTCGCAAT
TGACGGCAGTGGCTCCATGAATGTAACTGAATTCCAGTTGGAGAAAGATT
TCGTCAAGCTTGTGGCCGCTATTGTTGCTCTTGATCCGGAATCGAAATAT
GCCGCAGTACAATATGGATTGCGCCCTGCATTTGTGAGCACGCTCACGCA
AAATGCCGACAGTTTCCTGCTCGCAGTTGATGCCGCTCAATCCTTGGATG
CTCCCAGAACCTTTATTGCTCCTGGTCTCGGAGCTTGCATGAGACAGCTC
AGAAGGGCACGAGGCGAACCGCAGAAGATTGTTCTTCTTGGTGATGGTCA
GAGTAACTTCGATTCTCAGCTGCCGCCGCTTGACCCCGAATCCATTGCCC
AGAGCTTCCTTGCTAGTCCGAATAACTCGATCTCTGCCGTTGGTGTGGGT
AACTTCCAAGACCCCGACATGCTTGAAGACATTGCTGGTAGCCCCGACAG
AGTTTTCAAGGTTGCCCAATGGTTGGATGTCATCTTTGTCCTTGCTGACC
TTGTCGCCGATGTTTGTGGCGCAGACGCCGTGGAGTTCTAA
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protein sequence of Ggra10318.t1

>Ggra10318.t1 ID=Ggra10318.t1|Name=Ggra10318.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MFRPLFILFLSLFISLILAEVTTDSAERVIEEVDTPLTDGEAQQAEVDAA
VAIVAATDCNPNICFAIDGSGSMNVTEFQLEKDFVKLVAAIVALDPESKY
AAVQYGLRPAFVSTLTQNADSFLLAVDAAQSLDAPRTFIAPGLGACMRQL
RRARGEPQKIVLLGDGQSNFDSQLPPLDPESIAQSFLASPNNSISAVGVG
NFQDPDMLEDIAGSPDRVFKVAQWLDVIFVLADLVADVCGADAVEF*
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mRNA from alignment at tig00000016_pilon:896483..897223-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10318.t1 ID=Ggra10318.t1|Name=Ggra10318.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000016_pilon:896483..897223- (Gracilaria gracilis GNS1m male)
ATGTTCCGCCCTCTTTTCATTCTCTTCCTTTCTCTGTTCATCTCGCTGAT
TCTCGCCGAAGTGACAACTGACAGCGCAGAACGTGTCATTGAGGAAGTCG
ATACCCCTCTGACTGATGGCGAAGCCCAGCAGGCCGAAGTTGATGCCGCC
GTTGCCATTGTGGCCGCCACCGACTGCAACCCCAACATCTGCTTCGCAAT
TGACGGCAGTGGCTCCATGAATGTAACTGAATTCCAGTTGGAGAAAGATT
TCGTCAAGCTTGTGGCCGCTATTGTTGCTCTTGATCCGGAATCGAAATAT
GCCGCAGTACAATATGGATTGCGCCCTGCATTTGTGAGCACGCTCACGCA
AAATGCCGACAGTTTCCTGCTCGCAGTTGATGCCGCTCAATCCTTGGATG
CTCCCAGAACCTTTATTGCTCCTGGTCTCGGAGCTTGCATGAGACAGCTC
AGAAGGGCACGAGGCGAACCGCAGAAGATTGTTCTTCTTGGTGATGGTCA
GAGTAACTTCGATTCTCAGCTGCCGCCGCTTGACCCCGAATCCATTGCCC
AGAGCTTCCTTGCTAGTCCGAATAACTCGATCTCTGCCGTTGGTGTGGGT
AACTTCCAAGACCCCGACATGCTTGAAGACATTGCTGGTAGCCCCGACAG
AGTTTTCAAGGTTGCCCAATGGTTGGATGTCATCTTTGTCCTTGCTGACC
TTGTCGCCGATGTTTGTGGCGCAGACGCCGTGGAGTTCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:896483..897223-

>Ggra10318.t1 ID=Ggra10318.t1|Name=Ggra10318.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000016_pilon:896483..897223- (Gracilaria gracilis GNS1m male)
ATGTTCCGCCCTCTTTTCATTCTCTTCCTTTCTCTGTTCATCTCGCTGAT
TCTCGCCGAAGTGACAACTGACAGCGCAGAACGTGTCATTGAGGAAGTCG
ATACCCCTCTGACTGATGGCGAAGCCCAGCAGGCCGAAGTTGATGCCGCC
GTTGCCATTGTGGCCGCCACCGACTGCAACCCCAACATCTGCTTCGCAAT
TGACGGCAGTGGCTCCATGAATGTAACTGAATTCCAGTTGGAGAAAGATT
TCGTCAAGCTTGTGGCCGCTATTGTTGCTCTTGATCCGGAATCGAAATAT
GCCGCAGTACAATATGGATTGCGCCCTGCATTTGTGAGCACGCTCACGCA
AAATGCCGACAGTTTCCTGCTCGCAGTTGATGCCGCTCAATCCTTGGATG
CTCCCAGAACCTTTATTGCTCCTGGTCTCGGAGCTTGCATGAGACAGCTC
AGAAGGGCACGAGGCGAACCGCAGAAGATTGTTCTTCTTGGTGATGGTCA
GAGTAACTTCGATTCTCAGCTGCCGCCGCTTGACCCCGAATCCATTGCCC
AGAGCTTCCTTGCTAGTCCGAATAACTCGATCTCTGCCGTTGGTGTGGGT
AACTTCCAAGACCCCGACATGCTTGAAGACATTGCTGGTAGCCCCGACAG
AGTTTTCAAGGTTGCCCAATGGTTGGATGTCATCTTTGTCCTTGCTGACC
TTGTCGCCGATGTTTGTGGCGCAGACGCCGTGGAGTTCTAA
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