Ggra10317.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10317.t1
Unique NameGgra10317.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:863479..863997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15699223
PFAMsRVT_1
Max annot lvl33208|Metazoa
Evalue3.75e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa
DescriptionK02A2.6-like
COG categoryOU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10317Ggra10317Gracilaria gracilis GNS1m malegenetig00000016_pilon 863479..863997 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10317.t1.start1Ggra10317.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 863479..863481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10317.t1.CDS1Ggra10317.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 863479..863997 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10317.t1.exon1Ggra10317.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 863479..863997 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10317.t1.stop1Ggra10317.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 863995..863997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10317.t1Ggra10317.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 863479..863997 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10317.t1 ID=Ggra10317.t1|Name=Ggra10317.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MATLRDAEVTLKLWKCEFFMDSVKHLGHIIRSGRVMIEEARFKSLKQATE
PTPQTELRSFLGFVNVYRRFIPNFADIAATLNTLFRKVQAPKLNLFKSTQ
TEASSSLKEAATVASVLSLPRPRLPYTVDTDSSDCQVGCVLFQTTPEGER
KPIGYCSRSLDVHEKNYSVSEK*
back to top

spliced messenger RNA

>Ggra10317.t1 ID=Ggra10317.t1|Name=Ggra10317.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000016_pilon:863479..863997+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggccacgttacgggatgcagaggtgacacttaagctgtggaaatgcga
attcttcatggattctgtcaagcatcttggtcacatcatccgttcaggac
gtgtcatgatcgaagaagctcgtttcaagtcgctgaaacaggctacggaa
ccgactccccagacggaactgagatcctttctaggatttgtaaacgtcta
tagacggtttattcccaacttcgcagacatcgcagcaactctcaacacgc
tttttcggaaggttcaagcgcctaagctaaacctattcaaatctactcag
acggaagcctctagctctctcaaagaggctgcaaccgtggcatcagtgtt
gtcactaccgagaccgagacttccatataccgtggacacggattctagtg
actgccaggtaggctgtgtcttgtttcaaaccaccccagagggggaacgc
aagccaattggatactgttcccgctcgttggacgtgcatgagaagaatta
ctccgtctcagagaagtaa
back to top

protein sequence of Ggra10317.t1

>Ggra10317.t1 ID=Ggra10317.t1|Name=Ggra10317.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MATLRDAEVTLKLWKCEFFMDSVKHLGHIIRSGRVMIEEARFKSLKQATE
PTPQTELRSFLGFVNVYRRFIPNFADIAATLNTLFRKVQAPKLNLFKSTQ
TEASSSLKEAATVASVLSLPRPRLPYTVDTDSSDCQVGCVLFQTTPEGER
KPIGYCSRSLDVHEKNYSVSEK*
back to top

mRNA from alignment at tig00000016_pilon:863479..863997+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10317.t1 ID=Ggra10317.t1|Name=Ggra10317.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000016_pilon:863479..863997+ (Gracilaria gracilis GNS1m male)
atggccacgttacgggatgcagaggtgacacttaagctgtggaaatgcga
attcttcatggattctgtcaagcatcttggtcacatcatccgttcaggac
gtgtcatgatcgaagaagctcgtttcaagtcgctgaaacaggctacggaa
ccgactccccagacggaactgagatcctttctaggatttgtaaacgtcta
tagacggtttattcccaacttcgcagacatcgcagcaactctcaacacgc
tttttcggaaggttcaagcgcctaagctaaacctattcaaatctactcag
acggaagcctctagctctctcaaagaggctgcaaccgtggcatcagtgtt
gtcactaccgagaccgagacttccatataccgtggacacggattctagtg
actgccaggtaggctgtgtcttgtttcaaaccaccccagagggggaacgc
aagccaattggatactgttcccgctcgttggacgtgcatgagaagaatta
ctccgtctcagagaagtaa
back to top

Coding sequence (CDS) from alignment at tig00000016_pilon:863479..863997+

>Ggra10317.t1 ID=Ggra10317.t1|Name=Ggra10317.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000016_pilon:863479..863997+ (Gracilaria gracilis GNS1m male)
atggccacgttacgggatgcagaggtgacacttaagctgtggaaatgcga
attcttcatggattctgtcaagcatcttggtcacatcatccgttcaggac
gtgtcatgatcgaagaagctcgtttcaagtcgctgaaacaggctacggaa
ccgactccccagacggaactgagatcctttctaggatttgtaaacgtcta
tagacggtttattcccaacttcgcagacatcgcagcaactctcaacacgc
tttttcggaaggttcaagcgcctaagctaaacctattcaaatctactcag
acggaagcctctagctctctcaaagaggctgcaaccgtggcatcagtgtt
gtcactaccgagaccgagacttccatataccgtggacacggattctagtg
actgccaggtaggctgtgtcttgtttcaaaccaccccagagggggaacgc
aagccaattggatactgttcccgctcgttggacgtgcatgagaagaatta
ctccgtctcagagaagtaa
back to top