Ggra10316.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10316.t1
Unique NameGgra10316.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length479
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:860988..862819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10316Ggra10316Gracilaria gracilis GNS1m malegenetig00000016_pilon 860988..862819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10316.t1Ggra10316.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 860988..862819 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10316.t1.start1Ggra10316.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 860988..860990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10316.t1.CDS1Ggra10316.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 860988..861063 +
Ggra10316.t1.CDS2Ggra10316.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 861168..861436 +
Ggra10316.t1.CDS3Ggra10316.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 861503..861638 +
Ggra10316.t1.CDS4Ggra10316.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000016_pilon 861711..862359 +
Ggra10316.t1.CDS5Ggra10316.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000016_pilon 862513..862819 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10316.t1.exon1Ggra10316.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 860988..861063 +
Ggra10316.t1.exon2Ggra10316.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 861168..861436 +
Ggra10316.t1.exon3Ggra10316.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 861503..861638 +
Ggra10316.t1.exon4Ggra10316.t1.exon4Gracilaria gracilis GNS1m maleexontig00000016_pilon 861711..862359 +
Ggra10316.t1.exon5Ggra10316.t1.exon5Gracilaria gracilis GNS1m maleexontig00000016_pilon 862513..862819 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10316.t1.intron1Ggra10316.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 861064..861167 +
Ggra10316.t1.intron2Ggra10316.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 861437..861502 +
Ggra10316.t1.intron3Ggra10316.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000016_pilon 861639..861710 +
Ggra10316.t1.intron4Ggra10316.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000016_pilon 862360..862512 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10316.t1.stop1Ggra10316.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 862817..862819 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10316.t1 ID=Ggra10316.t1|Name=Ggra10316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=479bp
MATNDIPSLTVEEQLRSLWAAYAILAFEGPTNIVEDVAKKCTRLRLRLET
VEQTVLVEANCTAESVAVSHSDKKVSASKNRKKWKNYDSDSSASSLSSRR
STGSDSSDSLVEKPLGSKHSGLKELEPTNLLYKKLFSYRYYRLMDSSLDK
TARRTGKFKDSEAGIFGMNEGQALVALLYVLGGLAEDQHNSVKSSSRAFE
GWVTCWPEAFQYLLRFYATGSAIQSTILALRVTKQRYGEMETDYPVRLNK
AFHRRGNVYSAQERCNMFSDGPHSAVRTLVARRGEENRKITYLKLVQYAR
AEGDALRTRVPDSRLKHIKALILEPETPSASMVVDEHSDKEYDQVQFAGI
DVLSIPTTELPSTTDASFQTAPDNTVLVVQVETDNPFYLLITNLGNTTQY
LVRNQVIGLVMPHPTLSALEPTEITAANVLGIVHSKEGKQSVSQSPPTPS
SSGQSPAKTKKKCVPTSCPQLDPVKELE*
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spliced messenger RNA

>Ggra10316.t1 ID=Ggra10316.t1|Name=Ggra10316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00000016_pilon:860988..862819+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggctactaacgatattcccagtttaactgtggaagagcagctccgctc
tctgtgggctgcctacgctatccttgctttcgaaggacccactaatatcg
tggaagacgtggctaagaagtgtacccgcctccgccttcgtttggaaaca
gtggaacaaacagtcctggttgaagccaattgcactgctgagtctgttgc
tgtttcacacagtgacaagaaggtcagtgcatccaaaaaccgcaagaagt
ggaaaaactacgactctgattcttcagcatcttctctttcttcccgccgg
tcaaccggatctgactcatccgactctttggtagaaaagcccctcggaag
caagcactctggattaaaagagttggagcctaccaatctgctctacaaga
agctgttttcataccgttactaccgtttgatggactcatcactggataaa
actgcccgaaggacggggaagttcaaagactcggaagccggcatctttgg
gatgaatgaaggacaggcgttggtcgcgctgctctacgttctaggcggac
ttgcggaagatcagcacaactctgtaaaaagttcatcgcgagcctttgaa
ggatgggttacttgctggcctgaagcatttcagtacctactgagatttta
cgccactggatccgctatccagtcgacgatccttgctctgagagtcacca
aacaacgctatggcgaaatggaaactgattacccggtgcgcctgaacaag
gccttccaccgtcgcggtaatgtttattccgctcaagagcgttgtaacat
gttctccgatggaccgcactccgctgtacggaccctggtggcccgtcgcg
gtgaggaaaaccgcaagattacgtacttgaaactggtgcagtatgcacgc
gccgaaggcgatgcgctacgcacacgagtcccagacagccggctgaagca
cattaaagcgttgattttggaaccggaaaccccgtctgcgtcaatggttg
ttgacgagcactcagataaggagtacgatcaggttcaatttgcaggtatt
gacgtgctttcaatcccgacaacggagcttccctcaactacggatgcctc
gtttcagacggctcctgataatacagtgctagtggtccaagtagaaacgg
ataatcctttctacctgttgataaccaatcttggcaacacaacccagtat
ctggtgaggaaccaagtgattggcttggttatgccgcatccaacgttatc
tgcgttggaacctacagagattactgctgccaatgtgctcggaatcgttc
actctaaggagggaaaacagtctgtatctcaatcgcctccaactccgagt
tcttcgggtcagtcacctgctaagacaaagaagaaatgcgttccgacgag
ctgtccccaattggacccagtgaaggaattggaataa
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protein sequence of Ggra10316.t1

>Ggra10316.t1 ID=Ggra10316.t1|Name=Ggra10316.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=479bp
MATNDIPSLTVEEQLRSLWAAYAILAFEGPTNIVEDVAKKCTRLRLRLET
VEQTVLVEANCTAESVAVSHSDKKVSASKNRKKWKNYDSDSSASSLSSRR
STGSDSSDSLVEKPLGSKHSGLKELEPTNLLYKKLFSYRYYRLMDSSLDK
TARRTGKFKDSEAGIFGMNEGQALVALLYVLGGLAEDQHNSVKSSSRAFE
GWVTCWPEAFQYLLRFYATGSAIQSTILALRVTKQRYGEMETDYPVRLNK
AFHRRGNVYSAQERCNMFSDGPHSAVRTLVARRGEENRKITYLKLVQYAR
AEGDALRTRVPDSRLKHIKALILEPETPSASMVVDEHSDKEYDQVQFAGI
DVLSIPTTELPSTTDASFQTAPDNTVLVVQVETDNPFYLLITNLGNTTQY
LVRNQVIGLVMPHPTLSALEPTEITAANVLGIVHSKEGKQSVSQSPPTPS
SSGQSPAKTKKKCVPTSCPQLDPVKELE*
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mRNA from alignment at tig00000016_pilon:860988..862819+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10316.t1 ID=Ggra10316.t1|Name=Ggra10316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1832bp|location=Sequence derived from alignment at tig00000016_pilon:860988..862819+ (Gracilaria gracilis GNS1m male)
atggctactaacgatattcccagtttaactgtggaagagcagctccgctc
tctgtgggctgcctacgctatccttggtaagactttgtcgctacttcgag
aaaaggtggtggcactgctttgcaagactttcctgaggatgtccgcgtat
tgcgtggtgatatcaacttcttcttggaagctttcgaaggacccactaat
atcgtggaagacgtggctaagaagtgtacccgcctccgccttcgtttgga
aacagtggaacaaacagtcctggttgaagccaattgcactgctgagtctg
ttgctgtttcacacagtgacaagaaggtcagtgcatccaaaaaccgcaag
aagtggaaaaactacgactctgattcttcagcatcttctctttcttcccg
ccggtcaaccggatctgactcatccgactctttggtagaaaagcccctcg
tgagcgttcgtcacgctcaaaagcggccatcagcgacctaagatgtgata
tgcgcccgctcgaagggaagcaagcactctggattaaaagagttggagcc
taccaatctgctctacaagaagctgttttcataccgttactaccgtttga
tggactcatcactggataaaactgcccgaaggacggggaagttcaaagac
tgtatcaaacgtaatccattgttttacagatgatgaccccatcttggtgt
ttgatttgtatcacgctttgtagcggaagccggcatctttgggatgaatg
aaggacaggcgttggtcgcgctgctctacgttctaggcggacttgcggaa
gatcagcacaactctgtaaaaagttcatcgcgagcctttgaaggatgggt
tacttgctggcctgaagcatttcagtacctactgagattttacgccactg
gatccgctatccagtcgacgatccttgctctgagagtcaccaaacaacgc
tatggcgaaatggaaactgattacccggtgcgcctgaacaaggccttcca
ccgtcgcggtaatgtttattccgctcaagagcgttgtaacatgttctccg
atggaccgcactccgctgtacggaccctggtggcccgtcgcggtgaggaa
aaccgcaagattacgtacttgaaactggtgcagtatgcacgcgccgaagg
cgatgcgctacgcacacgagtcccagacagccggctgaagcacattaaag
cgttgattttggaaccggaaaccccgtctgcgtcaatggttgttgacgag
cactcagataaggagtacgatcaggttcaatttgcaggtattgacgtgct
ttcaatcccgacaacggagcttccctcaactacggatgcctcgtttcaga
cggctcctgataatacagtgctgtacgcagattcgcgaagcttcgtgtag
cctccgcgacacgtgcttccagagtctcaagtctgggtacaggtgaattc
cagtcaacacggcttacaaatcgtccagccattgccgtcgttgtatgaca
aatacactctcgtcatttctaatagagtggtccaagtagaaacggataat
cctttctacctgttgataaccaatcttggcaacacaacccagtatctggt
gaggaaccaagtgattggcttggttatgccgcatccaacgttatctgcgt
tggaacctacagagattactgctgccaatgtgctcggaatcgttcactct
aaggagggaaaacagtctgtatctcaatcgcctccaactccgagttcttc
gggtcagtcacctgctaagacaaagaagaaatgcgttccgacgagctgtc
cccaattggacccagtgaaggaattggaataa
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Coding sequence (CDS) from alignment at tig00000016_pilon:860988..862819+

>Ggra10316.t1 ID=Ggra10316.t1|Name=Ggra10316.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1437bp|location=Sequence derived from alignment at tig00000016_pilon:860988..862819+ (Gracilaria gracilis GNS1m male)
atggctactaacgatattcccagtttaactgtggaagagcagctccgctc
tctgtgggctgcctacgctatccttgctttcgaaggacccactaatatcg
tggaagacgtggctaagaagtgtacccgcctccgccttcgtttggaaaca
gtggaacaaacagtcctggttgaagccaattgcactgctgagtctgttgc
tgtttcacacagtgacaagaaggtcagtgcatccaaaaaccgcaagaagt
ggaaaaactacgactctgattcttcagcatcttctctttcttcccgccgg
tcaaccggatctgactcatccgactctttggtagaaaagcccctcggaag
caagcactctggattaaaagagttggagcctaccaatctgctctacaaga
agctgttttcataccgttactaccgtttgatggactcatcactggataaa
actgcccgaaggacggggaagttcaaagactcggaagccggcatctttgg
gatgaatgaaggacaggcgttggtcgcgctgctctacgttctaggcggac
ttgcggaagatcagcacaactctgtaaaaagttcatcgcgagcctttgaa
ggatgggttacttgctggcctgaagcatttcagtacctactgagatttta
cgccactggatccgctatccagtcgacgatccttgctctgagagtcacca
aacaacgctatggcgaaatggaaactgattacccggtgcgcctgaacaag
gccttccaccgtcgcggtaatgtttattccgctcaagagcgttgtaacat
gttctccgatggaccgcactccgctgtacggaccctggtggcccgtcgcg
gtgaggaaaaccgcaagattacgtacttgaaactggtgcagtatgcacgc
gccgaaggcgatgcgctacgcacacgagtcccagacagccggctgaagca
cattaaagcgttgattttggaaccggaaaccccgtctgcgtcaatggttg
ttgacgagcactcagataaggagtacgatcaggttcaatttgcaggtatt
gacgtgctttcaatcccgacaacggagcttccctcaactacggatgcctc
gtttcagacggctcctgataatacagtgctagtggtccaagtagaaacgg
ataatcctttctacctgttgataaccaatcttggcaacacaacccagtat
ctggtgaggaaccaagtgattggcttggttatgccgcatccaacgttatc
tgcgttggaacctacagagattactgctgccaatgtgctcggaatcgttc
actctaaggagggaaaacagtctgtatctcaatcgcctccaactccgagt
tcttcgggtcagtcacctgctaagacaaagaagaaatgcgttccgacgag
ctgtccccaattggacccagtgaaggaattggaataa
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