Ggra10315.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10315.t1
Unique NameGgra10315.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:829041..829718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10315Ggra10315Gracilaria gracilis GNS1m malegenetig00000016_pilon 829041..829718 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10315.t1.start1Ggra10315.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 829041..829043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10315.t1.CDS1Ggra10315.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 829041..829718 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10315.t1.exon1Ggra10315.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 829041..829718 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10315.t1.stop1Ggra10315.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 829716..829718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10315.t1Ggra10315.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 829041..829718 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10315.t1 ID=Ggra10315.t1|Name=Ggra10315.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MNSSRRMYLLLALWAFYAVITTERLPTANAHNPELSNLIPVERVQNRSSS
CPVSLCFGIDGGRLTRTQVRRQRNFFGALLKLLSRKDGVKVAAVEYGSVN
RRLFALTSNFSEAASVAANLTFRGDELSSVSSSIVYCDSVLRDEEDRQAR
MVLFSDGTDNLGGSPSRRAEVFRTRSEGDIIVISLANSNSEVFKQVTSNN
SRDIFSLESDRYDSLLREVADRVCQ*
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spliced messenger RNA

>Ggra10315.t1 ID=Ggra10315.t1|Name=Ggra10315.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000016_pilon:829041..829718+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTTCGAGGCGAATGTATCTCTTGCTCGCGTTGTGGGCGTTTTA
CGCCGTTATCACCACAGAACGCTTACCGACAGCCAACGCGCATAACCCCG
AACTCTCAAACCTCATCCCGGTGGAGAGGGTTCAAAACCGTTCATCATCA
TGCCCGGTATCCTTATGCTTTGGTATCGATGGAGGTAGGCTCACGAGAAC
ACAGGTAAGGCGACAGAGGAACTTCTTTGGCGCTCTTCTGAAACTGCTTT
CGAGGAAAGATGGTGTGAAAGTGGCAGCCGTCGAGTATGGGTCCGTGAAC
CGAAGGCTGTTCGCACTGACTTCGAACTTTTCTGAGGCTGCTAGCGTGGC
GGCAAACCTTACATTCAGGGGAGATGAACTCTCAAGTGTGAGTAGCTCGA
TTGTATATTGCGACAGTGTACTTCGTGATGAGGAGGACAGACAGGCTCGA
ATGGTTCTCTTCAGCGATGGAACGGATAATCTAGGAGGGAGCCCATCACG
TAGGGCTGAGGTTTTCCGAACGAGGTCGGAAGGCGATATCATCGTCATCT
CTCTTGCAAATTCCAACTCTGAGGTGTTTAAACAAGTTACTTCGAATAAC
AGTAGAGACATATTCTCTCTAGAATCGGACAGATATGATTCTCTTCTGCG
AGAGGTGGCGGATAGGGTGTGCCAGTAG
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protein sequence of Ggra10315.t1

>Ggra10315.t1 ID=Ggra10315.t1|Name=Ggra10315.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MNSSRRMYLLLALWAFYAVITTERLPTANAHNPELSNLIPVERVQNRSSS
CPVSLCFGIDGGRLTRTQVRRQRNFFGALLKLLSRKDGVKVAAVEYGSVN
RRLFALTSNFSEAASVAANLTFRGDELSSVSSSIVYCDSVLRDEEDRQAR
MVLFSDGTDNLGGSPSRRAEVFRTRSEGDIIVISLANSNSEVFKQVTSNN
SRDIFSLESDRYDSLLREVADRVCQ*
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mRNA from alignment at tig00000016_pilon:829041..829718+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10315.t1 ID=Ggra10315.t1|Name=Ggra10315.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000016_pilon:829041..829718+ (Gracilaria gracilis GNS1m male)
ATGAATTCTTCGAGGCGAATGTATCTCTTGCTCGCGTTGTGGGCGTTTTA
CGCCGTTATCACCACAGAACGCTTACCGACAGCCAACGCGCATAACCCCG
AACTCTCAAACCTCATCCCGGTGGAGAGGGTTCAAAACCGTTCATCATCA
TGCCCGGTATCCTTATGCTTTGGTATCGATGGAGGTAGGCTCACGAGAAC
ACAGGTAAGGCGACAGAGGAACTTCTTTGGCGCTCTTCTGAAACTGCTTT
CGAGGAAAGATGGTGTGAAAGTGGCAGCCGTCGAGTATGGGTCCGTGAAC
CGAAGGCTGTTCGCACTGACTTCGAACTTTTCTGAGGCTGCTAGCGTGGC
GGCAAACCTTACATTCAGGGGAGATGAACTCTCAAGTGTGAGTAGCTCGA
TTGTATATTGCGACAGTGTACTTCGTGATGAGGAGGACAGACAGGCTCGA
ATGGTTCTCTTCAGCGATGGAACGGATAATCTAGGAGGGAGCCCATCACG
TAGGGCTGAGGTTTTCCGAACGAGGTCGGAAGGCGATATCATCGTCATCT
CTCTTGCAAATTCCAACTCTGAGGTGTTTAAACAAGTTACTTCGAATAAC
AGTAGAGACATATTCTCTCTAGAATCGGACAGATATGATTCTCTTCTGCG
AGAGGTGGCGGATAGGGTGTGCCAGTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:829041..829718+

>Ggra10315.t1 ID=Ggra10315.t1|Name=Ggra10315.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000016_pilon:829041..829718+ (Gracilaria gracilis GNS1m male)
ATGAATTCTTCGAGGCGAATGTATCTCTTGCTCGCGTTGTGGGCGTTTTA
CGCCGTTATCACCACAGAACGCTTACCGACAGCCAACGCGCATAACCCCG
AACTCTCAAACCTCATCCCGGTGGAGAGGGTTCAAAACCGTTCATCATCA
TGCCCGGTATCCTTATGCTTTGGTATCGATGGAGGTAGGCTCACGAGAAC
ACAGGTAAGGCGACAGAGGAACTTCTTTGGCGCTCTTCTGAAACTGCTTT
CGAGGAAAGATGGTGTGAAAGTGGCAGCCGTCGAGTATGGGTCCGTGAAC
CGAAGGCTGTTCGCACTGACTTCGAACTTTTCTGAGGCTGCTAGCGTGGC
GGCAAACCTTACATTCAGGGGAGATGAACTCTCAAGTGTGAGTAGCTCGA
TTGTATATTGCGACAGTGTACTTCGTGATGAGGAGGACAGACAGGCTCGA
ATGGTTCTCTTCAGCGATGGAACGGATAATCTAGGAGGGAGCCCATCACG
TAGGGCTGAGGTTTTCCGAACGAGGTCGGAAGGCGATATCATCGTCATCT
CTCTTGCAAATTCCAACTCTGAGGTGTTTAAACAAGTTACTTCGAATAAC
AGTAGAGACATATTCTCTCTAGAATCGGACAGATATGATTCTCTTCTGCG
AGAGGTGGCGGATAGGGTGTGCCAGTAG
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