Ggra10314.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10314.t1
Unique NameGgra10314.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:824869..825402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10314Ggra10314Gracilaria gracilis GNS1m malegenetig00000016_pilon 824869..825402 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10314.t1.start1Ggra10314.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 824869..824871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10314.t1.CDS1Ggra10314.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 824869..825402 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10314.t1.exon1Ggra10314.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 824869..825402 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10314.t1.stop1Ggra10314.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 825400..825402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10314.t1Ggra10314.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 824869..825402 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10314.t1 ID=Ggra10314.t1|Name=Ggra10314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MKLQNTRMATFFLVAFAISTLSFAIPHAGTKPHRDRPVEFMDPTLRPNKL
AVRDLVAKDENPPLQKDVIPPPSPTPDPCWKRNKQSISYRSGDCMPYHWT
SCTKRTHTHYIADNEIVSGHCGIVASSKIRNDADLGWEIDYDENARRVKV
TLKNCGGKFCFGDKEFGAGCVVDRYTC*
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spliced messenger RNA

>Ggra10314.t1 ID=Ggra10314.t1|Name=Ggra10314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000016_pilon:824869..825402+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCCAAAACACCCGAATGGCTACTTTCTTTCTGGTGGcattcgc
catctcgacgctctccttcgccattccccatgcgGGTACGAAACCCCATC
GTGACCGTCCGGTCGAATTCATGGATCCGACCCTCCGTCCCAACAAGCTT
GCAGTGCGCGATCTGGTTGCGAAGGACGAGAACCCCCCGCTTCAGAAGGA
CGTCATTCCCCCACCCTCGCCCACTCCGGATCCTTGCTGGAAGCGAAACA
AGCAAAGCATCAGCTACCGATCTGGTGACTGCATGCCATATCACTGGACG
AGCTGCACGAAGCGTACGCACACCCACTATATTGCCGATAACGAGATCGT
TTCTGGACATTGCGGAATCGTCGCGTCGTCCAAGATCCGGAATGACGCCG
ACTTGGGTTGGGAAATTGATTACGACGAAAACGCCAGGAGGGTGAAGGTG
ACACTGAAGAATTGTGGCGGCAAGTTCTGCTTTGGGGATAAAGAATTCGG
TGCGGGTTGTGTTGTGGATCGCTACACTTGCTAA
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protein sequence of Ggra10314.t1

>Ggra10314.t1 ID=Ggra10314.t1|Name=Ggra10314.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MKLQNTRMATFFLVAFAISTLSFAIPHAGTKPHRDRPVEFMDPTLRPNKL
AVRDLVAKDENPPLQKDVIPPPSPTPDPCWKRNKQSISYRSGDCMPYHWT
SCTKRTHTHYIADNEIVSGHCGIVASSKIRNDADLGWEIDYDENARRVKV
TLKNCGGKFCFGDKEFGAGCVVDRYTC*
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mRNA from alignment at tig00000016_pilon:824869..825402+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10314.t1 ID=Ggra10314.t1|Name=Ggra10314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000016_pilon:824869..825402+ (Gracilaria gracilis GNS1m male)
ATGAAGCTCCAAAACACCCGAATGGCTACTTTCTTTCTGGTGGcattcgc
catctcgacgctctccttcgccattccccatgcgGGTACGAAACCCCATC
GTGACCGTCCGGTCGAATTCATGGATCCGACCCTCCGTCCCAACAAGCTT
GCAGTGCGCGATCTGGTTGCGAAGGACGAGAACCCCCCGCTTCAGAAGGA
CGTCATTCCCCCACCCTCGCCCACTCCGGATCCTTGCTGGAAGCGAAACA
AGCAAAGCATCAGCTACCGATCTGGTGACTGCATGCCATATCACTGGACG
AGCTGCACGAAGCGTACGCACACCCACTATATTGCCGATAACGAGATCGT
TTCTGGACATTGCGGAATCGTCGCGTCGTCCAAGATCCGGAATGACGCCG
ACTTGGGTTGGGAAATTGATTACGACGAAAACGCCAGGAGGGTGAAGGTG
ACACTGAAGAATTGTGGCGGCAAGTTCTGCTTTGGGGATAAAGAATTCGG
TGCGGGTTGTGTTGTGGATCGCTACACTTGCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:824869..825402+

>Ggra10314.t1 ID=Ggra10314.t1|Name=Ggra10314.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000016_pilon:824869..825402+ (Gracilaria gracilis GNS1m male)
ATGAAGCTCCAAAACACCCGAATGGCTACTTTCTTTCTGGTGGcattcgc
catctcgacgctctccttcgccattccccatgcgGGTACGAAACCCCATC
GTGACCGTCCGGTCGAATTCATGGATCCGACCCTCCGTCCCAACAAGCTT
GCAGTGCGCGATCTGGTTGCGAAGGACGAGAACCCCCCGCTTCAGAAGGA
CGTCATTCCCCCACCCTCGCCCACTCCGGATCCTTGCTGGAAGCGAAACA
AGCAAAGCATCAGCTACCGATCTGGTGACTGCATGCCATATCACTGGACG
AGCTGCACGAAGCGTACGCACACCCACTATATTGCCGATAACGAGATCGT
TTCTGGACATTGCGGAATCGTCGCGTCGTCCAAGATCCGGAATGACGCCG
ACTTGGGTTGGGAAATTGATTACGACGAAAACGCCAGGAGGGTGAAGGTG
ACACTGAAGAATTGTGGCGGCAAGTTCTGCTTTGGGGATAAAGAATTCGG
TGCGGGTTGTGTTGTGGATCGCTACACTTGCTAA
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