Ggra10312.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10312.t1
Unique NameGgra10312.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:818917..819585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10312Ggra10312Gracilaria gracilis GNS1m malegenetig00000016_pilon 818917..819585 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10312.t1.stop1Ggra10312.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 818917..818919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10312.t1.CDS1Ggra10312.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 818917..819585 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10312.t1.exon1Ggra10312.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 818917..819585 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10312.t1.start1Ggra10312.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 819583..819585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10312.t1Ggra10312.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 818917..819585 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10312.t1 ID=Ggra10312.t1|Name=Ggra10312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=223bp
MKTFFVSTVLVALAACATAIWTVDMCPNRCNPDRAMSERECALAVTRGVC
AVASCSNPDSGFACEMPEDSFIIANTHMSQVDLVVEYSWNASQSDLDTNT
RFLNGNAGWKCEPDTDYLDFSGDDTSFGGRETTVVDVGQALTDGKWSGST
SVAALAGWHGSENEGDVTLKVSLRRKSDGGAVPGALLSATVSPGAQNNCA
ATEVGTVEIVRAQHHTRFTLQA*
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spliced messenger RNA

>Ggra10312.t1 ID=Ggra10312.t1|Name=Ggra10312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000016_pilon:818917..819585- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACTTTCTTTGTTTCCACTGTTCTCGTGGCCTTGGCCGCTTGCGC
CACCGCAATCTGGACCGTCGATATGTGTCCCAACCGATGCAACCCCGACC
GCGCCATGTCCGAACGCGAATGCGCCCTTGCCGTCACCCGCGGTGTGTGT
GCCGTCGCCTCTTGCTCCAACCCCGACAGTGGCTTCGCCTGTGAGATGCC
GGAAGACTCATTCATTATTGCCAACACTCATATGTCCCAAGTTGATTTGG
TTGTGGAATACTCATGGAACGCGAGCCAATCTGACCTCGACACGAACACC
CGCTTCCTTAACGGCAATGCCGGGTGGAAGTGCGAGCCCGATACCGACTA
TCTGGACTTCAGTGGCGACGACACCAGCTTTGGTGGCCGAGAAACTACCG
TCGTTGACGTTGGACAGGCTCTGACCGACGGCAAATGGTCCGGATCAACC
TCTGTGGCTGCCCTCGCTGGCTGGCACGGAAGTGAGAACGAGGGTGATGT
GACGCTTAAGGTGTCTCTGCGAAGGAAGTCCGATGGTGGAGCCGTCCCTG
GAGCCCTCCTCTCGGCCACAGTAAGCCCTGGAGCTCAAAACAACTGCGCC
GCAACCGAAGTGGGAACTGTTGAGATCGTCCGCGCCCAGCATCATACTCG
CTTCACTCTTCAGGCCTAA
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protein sequence of Ggra10312.t1

>Ggra10312.t1 ID=Ggra10312.t1|Name=Ggra10312.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=223bp
MKTFFVSTVLVALAACATAIWTVDMCPNRCNPDRAMSERECALAVTRGVC
AVASCSNPDSGFACEMPEDSFIIANTHMSQVDLVVEYSWNASQSDLDTNT
RFLNGNAGWKCEPDTDYLDFSGDDTSFGGRETTVVDVGQALTDGKWSGST
SVAALAGWHGSENEGDVTLKVSLRRKSDGGAVPGALLSATVSPGAQNNCA
ATEVGTVEIVRAQHHTRFTLQA*
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mRNA from alignment at tig00000016_pilon:818917..819585-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10312.t1 ID=Ggra10312.t1|Name=Ggra10312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000016_pilon:818917..819585- (Gracilaria gracilis GNS1m male)
ATGAAGACTTTCTTTGTTTCCACTGTTCTCGTGGCCTTGGCCGCTTGCGC
CACCGCAATCTGGACCGTCGATATGTGTCCCAACCGATGCAACCCCGACC
GCGCCATGTCCGAACGCGAATGCGCCCTTGCCGTCACCCGCGGTGTGTGT
GCCGTCGCCTCTTGCTCCAACCCCGACAGTGGCTTCGCCTGTGAGATGCC
GGAAGACTCATTCATTATTGCCAACACTCATATGTCCCAAGTTGATTTGG
TTGTGGAATACTCATGGAACGCGAGCCAATCTGACCTCGACACGAACACC
CGCTTCCTTAACGGCAATGCCGGGTGGAAGTGCGAGCCCGATACCGACTA
TCTGGACTTCAGTGGCGACGACACCAGCTTTGGTGGCCGAGAAACTACCG
TCGTTGACGTTGGACAGGCTCTGACCGACGGCAAATGGTCCGGATCAACC
TCTGTGGCTGCCCTCGCTGGCTGGCACGGAAGTGAGAACGAGGGTGATGT
GACGCTTAAGGTGTCTCTGCGAAGGAAGTCCGATGGTGGAGCCGTCCCTG
GAGCCCTCCTCTCGGCCACAGTAAGCCCTGGAGCTCAAAACAACTGCGCC
GCAACCGAAGTGGGAACTGTTGAGATCGTCCGCGCCCAGCATCATACTCG
CTTCACTCTTCAGGCCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:818917..819585-

>Ggra10312.t1 ID=Ggra10312.t1|Name=Ggra10312.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=669bp|location=Sequence derived from alignment at tig00000016_pilon:818917..819585- (Gracilaria gracilis GNS1m male)
ATGAAGACTTTCTTTGTTTCCACTGTTCTCGTGGCCTTGGCCGCTTGCGC
CACCGCAATCTGGACCGTCGATATGTGTCCCAACCGATGCAACCCCGACC
GCGCCATGTCCGAACGCGAATGCGCCCTTGCCGTCACCCGCGGTGTGTGT
GCCGTCGCCTCTTGCTCCAACCCCGACAGTGGCTTCGCCTGTGAGATGCC
GGAAGACTCATTCATTATTGCCAACACTCATATGTCCCAAGTTGATTTGG
TTGTGGAATACTCATGGAACGCGAGCCAATCTGACCTCGACACGAACACC
CGCTTCCTTAACGGCAATGCCGGGTGGAAGTGCGAGCCCGATACCGACTA
TCTGGACTTCAGTGGCGACGACACCAGCTTTGGTGGCCGAGAAACTACCG
TCGTTGACGTTGGACAGGCTCTGACCGACGGCAAATGGTCCGGATCAACC
TCTGTGGCTGCCCTCGCTGGCTGGCACGGAAGTGAGAACGAGGGTGATGT
GACGCTTAAGGTGTCTCTGCGAAGGAAGTCCGATGGTGGAGCCGTCCCTG
GAGCCCTCCTCTCGGCCACAGTAAGCCCTGGAGCTCAAAACAACTGCGCC
GCAACCGAAGTGGGAACTGTTGAGATCGTCCGCGCCCAGCATCATACTCG
CTTCACTCTTCAGGCCTAA
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