Ggra10311.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10311.t1
Unique NameGgra10311.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:695284..695961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10311Ggra10311Gracilaria gracilis GNS1m malegenetig00000016_pilon 695284..695961 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10311.t1.start1Ggra10311.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 695284..695286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10311.t1.CDS1Ggra10311.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 695284..695961 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10311.t1.exon1Ggra10311.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 695284..695961 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10311.t1.stop1Ggra10311.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 695959..695961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10311.t1Ggra10311.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 695284..695961 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10311.t1 ID=Ggra10311.t1|Name=Ggra10311.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MNSSRRMYLLLALWAFYAVITTGRLQTADALNPELSSLIPVERVRNRASS
CPVSVCFGIDGGRLTRTQVRRQRNFFGALLKLLSRKDGAKVAAVEYGSAN
RRLFRLTSNFSEAISVAANLTFRGDELSSVSSSIVYCDSVLRDEEDRQAR
MVLFSDGTDNLGGSPSRRAEVFRTRSEGDIIVISLANSNSEVFKQVTSNN
RRDIFCLESDRYDSLLREVADRVCQ*
back to top

spliced messenger RNA

>Ggra10311.t1 ID=Ggra10311.t1|Name=Ggra10311.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000016_pilon:695284..695961+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTTCGAGGCGAATGTATCTCTTGCTCGCGTTGTGGGCGTTCTA
TGCCGTTATCACCACAGGACGCCTACAGACAGCCGACGCGCTTAACCCCG
AACTCTCAAGCCTTATCCCGGTGGAGAGGGTTCGCAATCGTGCATCATCA
TGCCCGGTATCCGTGTGCTTTGGTATCGATGGGGGTAGGCTCACGAGAAC
CCAGGTCCGGCGACAGAGAAACTTCTTTGGCGCTCTTCTTAAATTGCTTT
CGAGGAAAGATGGTGCGAAAGTGGCAGCCGTCGAGTATGGGTCAGCGAAC
CGAAGGTTGTTCAGACTTACCTCGAACTTTTCTGAGGCTATTAGCGTTGC
GGCAAACCTTACATTCAGAGGAGATGAACTCTCAAGTGTGAGTAGCTCGA
TTGTATATTGCGACAGTGTACTTCGTGATGAAGAGGACAGGCAGGCTCGA
ATGGTTCTCTTCAGCGACGGAACGGATAATCTAGGAGGGAGCCCGTCACG
TAGGGCTGAGGTTTTCCGAACGAGGTCGGAAGGTGATATCATCGTCATCT
CTCTTGCGAATTCCAACTCCGAAGTGTTTAAACAAGTCACTTCCAATAAC
AGAAGAGATATATTCTGTCTAGAATCGGACAGGTATGATTCTCTTCTACG
AGAGGTGGCGGATAGAGTGTGTCAGTAA
back to top

protein sequence of Ggra10311.t1

>Ggra10311.t1 ID=Ggra10311.t1|Name=Ggra10311.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MNSSRRMYLLLALWAFYAVITTGRLQTADALNPELSSLIPVERVRNRASS
CPVSVCFGIDGGRLTRTQVRRQRNFFGALLKLLSRKDGAKVAAVEYGSAN
RRLFRLTSNFSEAISVAANLTFRGDELSSVSSSIVYCDSVLRDEEDRQAR
MVLFSDGTDNLGGSPSRRAEVFRTRSEGDIIVISLANSNSEVFKQVTSNN
RRDIFCLESDRYDSLLREVADRVCQ*
back to top

mRNA from alignment at tig00000016_pilon:695284..695961+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10311.t1 ID=Ggra10311.t1|Name=Ggra10311.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000016_pilon:695284..695961+ (Gracilaria gracilis GNS1m male)
ATGAATTCTTCGAGGCGAATGTATCTCTTGCTCGCGTTGTGGGCGTTCTA
TGCCGTTATCACCACAGGACGCCTACAGACAGCCGACGCGCTTAACCCCG
AACTCTCAAGCCTTATCCCGGTGGAGAGGGTTCGCAATCGTGCATCATCA
TGCCCGGTATCCGTGTGCTTTGGTATCGATGGGGGTAGGCTCACGAGAAC
CCAGGTCCGGCGACAGAGAAACTTCTTTGGCGCTCTTCTTAAATTGCTTT
CGAGGAAAGATGGTGCGAAAGTGGCAGCCGTCGAGTATGGGTCAGCGAAC
CGAAGGTTGTTCAGACTTACCTCGAACTTTTCTGAGGCTATTAGCGTTGC
GGCAAACCTTACATTCAGAGGAGATGAACTCTCAAGTGTGAGTAGCTCGA
TTGTATATTGCGACAGTGTACTTCGTGATGAAGAGGACAGGCAGGCTCGA
ATGGTTCTCTTCAGCGACGGAACGGATAATCTAGGAGGGAGCCCGTCACG
TAGGGCTGAGGTTTTCCGAACGAGGTCGGAAGGTGATATCATCGTCATCT
CTCTTGCGAATTCCAACTCCGAAGTGTTTAAACAAGTCACTTCCAATAAC
AGAAGAGATATATTCTGTCTAGAATCGGACAGGTATGATTCTCTTCTACG
AGAGGTGGCGGATAGAGTGTGTCAGTAA
back to top

Coding sequence (CDS) from alignment at tig00000016_pilon:695284..695961+

>Ggra10311.t1 ID=Ggra10311.t1|Name=Ggra10311.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000016_pilon:695284..695961+ (Gracilaria gracilis GNS1m male)
ATGAATTCTTCGAGGCGAATGTATCTCTTGCTCGCGTTGTGGGCGTTCTA
TGCCGTTATCACCACAGGACGCCTACAGACAGCCGACGCGCTTAACCCCG
AACTCTCAAGCCTTATCCCGGTGGAGAGGGTTCGCAATCGTGCATCATCA
TGCCCGGTATCCGTGTGCTTTGGTATCGATGGGGGTAGGCTCACGAGAAC
CCAGGTCCGGCGACAGAGAAACTTCTTTGGCGCTCTTCTTAAATTGCTTT
CGAGGAAAGATGGTGCGAAAGTGGCAGCCGTCGAGTATGGGTCAGCGAAC
CGAAGGTTGTTCAGACTTACCTCGAACTTTTCTGAGGCTATTAGCGTTGC
GGCAAACCTTACATTCAGAGGAGATGAACTCTCAAGTGTGAGTAGCTCGA
TTGTATATTGCGACAGTGTACTTCGTGATGAAGAGGACAGGCAGGCTCGA
ATGGTTCTCTTCAGCGACGGAACGGATAATCTAGGAGGGAGCCCGTCACG
TAGGGCTGAGGTTTTCCGAACGAGGTCGGAAGGTGATATCATCGTCATCT
CTCTTGCGAATTCCAACTCCGAAGTGTTTAAACAAGTCACTTCCAATAAC
AGAAGAGATATATTCTGTCTAGAATCGGACAGGTATGATTCTCTTCTACG
AGAGGTGGCGGATAGAGTGTGTCAGTAA
back to top