Ggra1031.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1031.t1
Unique NameGgra1031.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:692062..693027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1333523.L593_12265
Preferred namesdr2
PFAMsadh_short
Max annot lvl183963|Halobacteria
Evalue1.57e-34
EggNOG OGsCOG1028@1|root,arCOG01264@2157|Archaea,2XTEK@28890|Euryarchaeota,23SJP@183963|Halobacteria
DescriptionCOG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1031Ggra1031Gracilaria gracilis GNS1m malegenetig00000027_pilon 692062..693027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1031.t1Ggra1031.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 692062..693027 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1031.t1.start1Ggra1031.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 692062..692064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1031.t1.CDS1Ggra1031.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 692062..692400 +
Ggra1031.t1.CDS2Ggra1031.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000027_pilon 692638..693027 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1031.t1.exon1Ggra1031.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 692062..692400 +
Ggra1031.t1.exon2Ggra1031.t1.exon2Gracilaria gracilis GNS1m maleexontig00000027_pilon 692638..693027 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1031.t1.intron1Ggra1031.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000027_pilon 692401..692637 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1031.t1.stop1Ggra1031.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 693025..693027 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1031.t1 ID=Ggra1031.t1|Name=Ggra1031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=243bp
MPFTLDDVPSQVGKTFLITGASSGIGLIATRMLVGKGAHVVMACRNLEKS
QPLCDEISAAPAVAESGGKASLIRLDTTDLDSIDAFVETFAAAHDKLDVL
LLNAGIMMVNYRTSKLADLLLAHELHKRLKAADVDAFAIAAHPGYSRTSL
QSRIESLWQRCLFHAMSILGMPAEGGAMVLVRAATMERETIPVGAYFGPG
GMMAWVGAPVPDAKMCAQGRDDAQALKLWQTCEELCGVTTDI*
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spliced messenger RNA

>Ggra1031.t1 ID=Ggra1031.t1|Name=Ggra1031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000027_pilon:692062..693027+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTCACGCTAGACGACGTGCCGTCGCAGGTCGGCAAAACCTTCCT
CATAACCGGCGCCAGCTCCGGCATCGGCCTCATCGCGACGCGCATGCTGG
TCGGCAAGGGCGCGCACGTCGTGATGGCGTGTCGCAACCTGGAAAAGTCG
CAGCCCCTCTGCGACGAGATCTCCGCCGCCCCCGCCGTCGCCGAAAGCGG
CGGAAAAGCGTCGCTCATCCGCCTCGACACAACCGACCTAGACTCCATCG
ACGCCTTTGTGGAAACGTTCGCCGCTGCACACGACAAGCTCGACGTCCTC
CTTCTCAACGCGGGCATCATGATGGTCAACtaccgcaccagcaagctggc
agatctactgctTGCGCACGAGCTGCACAAACGGCTCAAAGCAGCCGACG
TGGATGCGTTTGCAATCGCCGCGCATCCAGGTTACTCGCGCACGTCGCTG
CAATCGCGCATCGAGTCCTTGTGGCAGCGCTGCCTGTTCCACGCGATGAG
TATTCTGGGAATGCCGGCAGAGGGCGGCGCGATGGTGCTTGTCAGAGCGG
CTACGATGGAAAGGGAAACCATTCCGGTGGGGGCGTACTTCGGGCCGGGC
GGCATGATGGCGTGGGTGGGCGCGCCTGTACCGGATGCGAAGATGTGTGC
GCAGGGCAGGGATGATGCGCAGGCGCTCAAGCTGTGGCAGACTTGTGAGG
AGCTTTGTGGCGTTACGACGGACATTTAG
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protein sequence of Ggra1031.t1

>Ggra1031.t1 ID=Ggra1031.t1|Name=Ggra1031.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=243bp
MPFTLDDVPSQVGKTFLITGASSGIGLIATRMLVGKGAHVVMACRNLEKS
QPLCDEISAAPAVAESGGKASLIRLDTTDLDSIDAFVETFAAAHDKLDVL
LLNAGIMMVNYRTSKLADLLLAHELHKRLKAADVDAFAIAAHPGYSRTSL
QSRIESLWQRCLFHAMSILGMPAEGGAMVLVRAATMERETIPVGAYFGPG
GMMAWVGAPVPDAKMCAQGRDDAQALKLWQTCEELCGVTTDI*
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mRNA from alignment at tig00000027_pilon:692062..693027+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1031.t1 ID=Ggra1031.t1|Name=Ggra1031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00000027_pilon:692062..693027+ (Gracilaria gracilis GNS1m male)
ATGCCGTTCACGCTAGACGACGTGCCGTCGCAGGTCGGCAAAACCTTCCT
CATAACCGGCGCCAGCTCCGGCATCGGCCTCATCGCGACGCGCATGCTGG
TCGGCAAGGGCGCGCACGTCGTGATGGCGTGTCGCAACCTGGAAAAGTCG
CAGCCCCTCTGCGACGAGATCTCCGCCGCCCCCGCCGTCGCCGAAAGCGG
CGGAAAAGCGTCGCTCATCCGCCTCGACACAACCGACCTAGACTCCATCG
ACGCCTTTGTGGAAACGTTCGCCGCTGCACACGACAAGCTCGACGTCCTC
CTTCTCAACGCGGGCATCATGATGGTCAACtaccgcaccgtgccctctcg
cagcactacccaccctgaaatcgagtcgcacatggcgtgtaacgttgtcg
gtcatttctacctcacgcacaaacttctaccaatcattcgcaatacgtct
ggtgctcgtgtcatcacagtgtcgtccatcgccgccgatcacacaaggtc
cacggatagcatagattacgacatcttcctcgggcgcgatgcgacgcgct
acgataagttagccgtgtatgcacagagcaagctggcagatctactgctT
GCGCACGAGCTGCACAAACGGCTCAAAGCAGCCGACGTGGATGCGTTTGC
AATCGCCGCGCATCCAGGTTACTCGCGCACGTCGCTGCAATCGCGCATCG
AGTCCTTGTGGCAGCGCTGCCTGTTCCACGCGATGAGTATTCTGGGAATG
CCGGCAGAGGGCGGCGCGATGGTGCTTGTCAGAGCGGCTACGATGGAAAG
GGAAACCATTCCGGTGGGGGCGTACTTCGGGCCGGGCGGCATGATGGCGT
GGGTGGGCGCGCCTGTACCGGATGCGAAGATGTGTGCGCAGGGCAGGGAT
GATGCGCAGGCGCTCAAGCTGTGGCAGACTTGTGAGGAGCTTTGTGGCGT
TACGACGGACATTTAG
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Coding sequence (CDS) from alignment at tig00000027_pilon:692062..693027+

>Ggra1031.t1 ID=Ggra1031.t1|Name=Ggra1031.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000027_pilon:692062..693027+ (Gracilaria gracilis GNS1m male)
ATGCCGTTCACGCTAGACGACGTGCCGTCGCAGGTCGGCAAAACCTTCCT
CATAACCGGCGCCAGCTCCGGCATCGGCCTCATCGCGACGCGCATGCTGG
TCGGCAAGGGCGCGCACGTCGTGATGGCGTGTCGCAACCTGGAAAAGTCG
CAGCCCCTCTGCGACGAGATCTCCGCCGCCCCCGCCGTCGCCGAAAGCGG
CGGAAAAGCGTCGCTCATCCGCCTCGACACAACCGACCTAGACTCCATCG
ACGCCTTTGTGGAAACGTTCGCCGCTGCACACGACAAGCTCGACGTCCTC
CTTCTCAACGCGGGCATCATGATGGTCAACtaccgcaccagcaagctggc
agatctactgctTGCGCACGAGCTGCACAAACGGCTCAAAGCAGCCGACG
TGGATGCGTTTGCAATCGCCGCGCATCCAGGTTACTCGCGCACGTCGCTG
CAATCGCGCATCGAGTCCTTGTGGCAGCGCTGCCTGTTCCACGCGATGAG
TATTCTGGGAATGCCGGCAGAGGGCGGCGCGATGGTGCTTGTCAGAGCGG
CTACGATGGAAAGGGAAACCATTCCGGTGGGGGCGTACTTCGGGCCGGGC
GGCATGATGGCGTGGGTGGGCGCGCCTGTACCGGATGCGAAGATGTGTGC
GCAGGGCAGGGATGATGCGCAGGCGCTCAAGCTGTGGCAGACTTGTGAGG
AGCTTTGTGGCGTTACGACGGACATTTAG
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