Ggra10309.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10309.t1
Unique NameGgra10309.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:688188..688817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10309Ggra10309Gracilaria gracilis GNS1m malegenetig00000016_pilon 688188..688817 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10309.t1.start1Ggra10309.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 688188..688190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10309.t1.CDS1Ggra10309.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 688188..688817 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10309.t1.exon1Ggra10309.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 688188..688817 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10309.t1.stop1Ggra10309.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 688815..688817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10309.t1Ggra10309.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 688188..688817 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10309.t1 ID=Ggra10309.t1|Name=Ggra10309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MLVPAFAQHVSNHVCQNRCNADRTLSVRECNQPATRNLCELKECDNGFSC
SLPENSFLIPNIQLPLLEMSIEYTWSPEQRDLDTSTRFLDANVGFQCNNP
SQYVEFGGDNTSNGGSEVTVIDFEKAREDGLWNGSTSITANAGWYGSANQ
GTAQMNVSLRRKSDGAVAGGATLSTRIHPGTQTDCSSTNVASVKIVRGAL
HTRILLERA*
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spliced messenger RNA

>Ggra10309.t1 ID=Ggra10309.t1|Name=Ggra10309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000016_pilon:688188..688817+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTGCCGGCCTTCGCCCAGCATGTGAGCAACCACGTCTGTCAGAA
TCGCTGTAACGCCGATCGTACTCTTTCGGTCCGAGAGTGCAACCAACCCG
CCACCCGCAATCTCTGTGAGTTGAAGGAATGTGACAACGGTTTCTCTTGC
TCCCTTCCAGAAAACTCGTTCCTTATCCCGAACATTCAGCTTCCTCTCCT
CGAGATGTCCATCGAGTACACATGGTCCCCTGAACAGCGTGATCTGGACA
CCAGCACCAGATTCTTGGACGCCAATGTTGGGTTCCAATGCAACAACCCT
TCGCAGTACGTTGAGTTTGGCGGAGATAACACGAGCAACGGCGGAAGTGA
GGTGACCGTGATCGACTTCGAAAAGGCTCGCGAGGATGGGTTGTGGAACG
GCTCAACCTCCATCACGGCGAACGCGGGATGGTACGGATCTGCCAACCAG
GGCACTGCGCAGATGAACGTGTCGCTCCGAAGGAAATCAGATGGCGCTGT
CGCTGGTGGTGCCACGCTTTCCACTCGCATCCATCCGGGCACCCAGACGG
ATTGCTCTTCGACCAATGTGGCGAGCGTGAAGATCGTTCGCGGTGCGCTC
CATACCAGAATCCTTCTTGAACGTGCCTAA
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protein sequence of Ggra10309.t1

>Ggra10309.t1 ID=Ggra10309.t1|Name=Ggra10309.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MLVPAFAQHVSNHVCQNRCNADRTLSVRECNQPATRNLCELKECDNGFSC
SLPENSFLIPNIQLPLLEMSIEYTWSPEQRDLDTSTRFLDANVGFQCNNP
SQYVEFGGDNTSNGGSEVTVIDFEKAREDGLWNGSTSITANAGWYGSANQ
GTAQMNVSLRRKSDGAVAGGATLSTRIHPGTQTDCSSTNVASVKIVRGAL
HTRILLERA*
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mRNA from alignment at tig00000016_pilon:688188..688817+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10309.t1 ID=Ggra10309.t1|Name=Ggra10309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000016_pilon:688188..688817+ (Gracilaria gracilis GNS1m male)
ATGCTCGTGCCGGCCTTCGCCCAGCATGTGAGCAACCACGTCTGTCAGAA
TCGCTGTAACGCCGATCGTACTCTTTCGGTCCGAGAGTGCAACCAACCCG
CCACCCGCAATCTCTGTGAGTTGAAGGAATGTGACAACGGTTTCTCTTGC
TCCCTTCCAGAAAACTCGTTCCTTATCCCGAACATTCAGCTTCCTCTCCT
CGAGATGTCCATCGAGTACACATGGTCCCCTGAACAGCGTGATCTGGACA
CCAGCACCAGATTCTTGGACGCCAATGTTGGGTTCCAATGCAACAACCCT
TCGCAGTACGTTGAGTTTGGCGGAGATAACACGAGCAACGGCGGAAGTGA
GGTGACCGTGATCGACTTCGAAAAGGCTCGCGAGGATGGGTTGTGGAACG
GCTCAACCTCCATCACGGCGAACGCGGGATGGTACGGATCTGCCAACCAG
GGCACTGCGCAGATGAACGTGTCGCTCCGAAGGAAATCAGATGGCGCTGT
CGCTGGTGGTGCCACGCTTTCCACTCGCATCCATCCGGGCACCCAGACGG
ATTGCTCTTCGACCAATGTGGCGAGCGTGAAGATCGTTCGCGGTGCGCTC
CATACCAGAATCCTTCTTGAACGTGCCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:688188..688817+

>Ggra10309.t1 ID=Ggra10309.t1|Name=Ggra10309.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000016_pilon:688188..688817+ (Gracilaria gracilis GNS1m male)
ATGCTCGTGCCGGCCTTCGCCCAGCATGTGAGCAACCACGTCTGTCAGAA
TCGCTGTAACGCCGATCGTACTCTTTCGGTCCGAGAGTGCAACCAACCCG
CCACCCGCAATCTCTGTGAGTTGAAGGAATGTGACAACGGTTTCTCTTGC
TCCCTTCCAGAAAACTCGTTCCTTATCCCGAACATTCAGCTTCCTCTCCT
CGAGATGTCCATCGAGTACACATGGTCCCCTGAACAGCGTGATCTGGACA
CCAGCACCAGATTCTTGGACGCCAATGTTGGGTTCCAATGCAACAACCCT
TCGCAGTACGTTGAGTTTGGCGGAGATAACACGAGCAACGGCGGAAGTGA
GGTGACCGTGATCGACTTCGAAAAGGCTCGCGAGGATGGGTTGTGGAACG
GCTCAACCTCCATCACGGCGAACGCGGGATGGTACGGATCTGCCAACCAG
GGCACTGCGCAGATGAACGTGTCGCTCCGAAGGAAATCAGATGGCGCTGT
CGCTGGTGGTGCCACGCTTTCCACTCGCATCCATCCGGGCACCCAGACGG
ATTGCTCTTCGACCAATGTGGCGAGCGTGAAGATCGTTCGCGGTGCGCTC
CATACCAGAATCCTTCTTGAACGTGCCTAA
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