Ggra10307.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10307.t1
Unique NameGgra10307.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:649252..649920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10307Ggra10307Gracilaria gracilis GNS1m malegenetig00000016_pilon 649252..649920 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10307.t1.start1Ggra10307.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 649252..649254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10307.t1.CDS1Ggra10307.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 649252..649920 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10307.t1.exon1Ggra10307.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 649252..649920 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10307.t1.stop1Ggra10307.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 649918..649920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10307.t1Ggra10307.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 649252..649920 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10307.t1 ID=Ggra10307.t1|Name=Ggra10307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=223bp
MKTFFVSAILVAMAACTAAIITVDMCPNRCNPNRAMSERECALAVTRGVC
AVASCSNPNNGFACEMPEDSFIIANTHMSQVELVVEYSWSASQSDLDTNT
RFLNGNVGWRCEPDTDYLDFSGDDTSFGGRETTVVDVGQALADGKWSQST
SVAALAGWHGSENEGDVTLKVSLRKKSDGGAVPGALLSSTVSPGAQFDCA
ATAVGTVEIVSAQHHTRFTLQA*
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spliced messenger RNA

>Ggra10307.t1 ID=Ggra10307.t1|Name=Ggra10307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000016_pilon:649252..649920+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACTTTCTTTGTTTCTGCTATCTTGGTGGCCATGGCCGCCTGCAC
AGCTGCGATCATCACTGTTGATATGTGTCCCAACCGATGCAACCCCAACC
GCGCCATGTCCGAACGCGAATGCGCCCTTGCCGTCACCCGCGGTGTGTGT
GCCGTCGCCTCTTGCTCCAACCCCAACAATGGATTCGCCTGTGAGATGCC
AGAAGACTCATTCATTATTGCCAACACTCATATGTCCCAAGTTGAGTTGG
TCGTGGAATACTCATGGAGcgcgagccaatctgacctcgacacgaacacc
cgcttccttaacggcaatgTCGGATGGAGGTGCGAGCCCGATACCGACTA
CCTGGACTTCAGTGGCGACGACACCAGCTTTGGTGGCCGAGAAACTACCG
TCGTTGACGTTGGACAGGCTCTGGCCGATGGCAAGTGGTCCCAATCTACC
TCCgtggctgccctcgctggctggcacggaagtgagaacgagggtgatgt
gacgcttaaggtgtctctgcgaaAGAAGTCCGATGGTGGAGCTGTCCCTG
GCGCTCTTCTGTCGTCCACCGTGAGCCCTGGCGCTCAGTTCGACTGTGCC
GCTACCGCAGTTGGAACTGTTGAGATCGTCAGCGCCCAGCATCATACTCG
CTTCACTCTTCAGGCCTAA
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protein sequence of Ggra10307.t1

>Ggra10307.t1 ID=Ggra10307.t1|Name=Ggra10307.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=223bp
MKTFFVSAILVAMAACTAAIITVDMCPNRCNPNRAMSERECALAVTRGVC
AVASCSNPNNGFACEMPEDSFIIANTHMSQVELVVEYSWSASQSDLDTNT
RFLNGNVGWRCEPDTDYLDFSGDDTSFGGRETTVVDVGQALADGKWSQST
SVAALAGWHGSENEGDVTLKVSLRKKSDGGAVPGALLSSTVSPGAQFDCA
ATAVGTVEIVSAQHHTRFTLQA*
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mRNA from alignment at tig00000016_pilon:649252..649920+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10307.t1 ID=Ggra10307.t1|Name=Ggra10307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000016_pilon:649252..649920+ (Gracilaria gracilis GNS1m male)
ATGAAGACTTTCTTTGTTTCTGCTATCTTGGTGGCCATGGCCGCCTGCAC
AGCTGCGATCATCACTGTTGATATGTGTCCCAACCGATGCAACCCCAACC
GCGCCATGTCCGAACGCGAATGCGCCCTTGCCGTCACCCGCGGTGTGTGT
GCCGTCGCCTCTTGCTCCAACCCCAACAATGGATTCGCCTGTGAGATGCC
AGAAGACTCATTCATTATTGCCAACACTCATATGTCCCAAGTTGAGTTGG
TCGTGGAATACTCATGGAGcgcgagccaatctgacctcgacacgaacacc
cgcttccttaacggcaatgTCGGATGGAGGTGCGAGCCCGATACCGACTA
CCTGGACTTCAGTGGCGACGACACCAGCTTTGGTGGCCGAGAAACTACCG
TCGTTGACGTTGGACAGGCTCTGGCCGATGGCAAGTGGTCCCAATCTACC
TCCgtggctgccctcgctggctggcacggaagtgagaacgagggtgatgt
gacgcttaaggtgtctctgcgaaAGAAGTCCGATGGTGGAGCTGTCCCTG
GCGCTCTTCTGTCGTCCACCGTGAGCCCTGGCGCTCAGTTCGACTGTGCC
GCTACCGCAGTTGGAACTGTTGAGATCGTCAGCGCCCAGCATCATACTCG
CTTCACTCTTCAGGCCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:649252..649920+

>Ggra10307.t1 ID=Ggra10307.t1|Name=Ggra10307.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=669bp|location=Sequence derived from alignment at tig00000016_pilon:649252..649920+ (Gracilaria gracilis GNS1m male)
ATGAAGACTTTCTTTGTTTCTGCTATCTTGGTGGCCATGGCCGCCTGCAC
AGCTGCGATCATCACTGTTGATATGTGTCCCAACCGATGCAACCCCAACC
GCGCCATGTCCGAACGCGAATGCGCCCTTGCCGTCACCCGCGGTGTGTGT
GCCGTCGCCTCTTGCTCCAACCCCAACAATGGATTCGCCTGTGAGATGCC
AGAAGACTCATTCATTATTGCCAACACTCATATGTCCCAAGTTGAGTTGG
TCGTGGAATACTCATGGAGcgcgagccaatctgacctcgacacgaacacc
cgcttccttaacggcaatgTCGGATGGAGGTGCGAGCCCGATACCGACTA
CCTGGACTTCAGTGGCGACGACACCAGCTTTGGTGGCCGAGAAACTACCG
TCGTTGACGTTGGACAGGCTCTGGCCGATGGCAAGTGGTCCCAATCTACC
TCCgtggctgccctcgctggctggcacggaagtgagaacgagggtgatgt
gacgcttaaggtgtctctgcgaaAGAAGTCCGATGGTGGAGCTGTCCCTG
GCGCTCTTCTGTCGTCCACCGTGAGCCCTGGCGCTCAGTTCGACTGTGCC
GCTACCGCAGTTGGAACTGTTGAGATCGTCAGCGCCCAGCATCATACTCG
CTTCACTCTTCAGGCCTAA
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