Ggra10303.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10303.t1
Unique NameGgra10303.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:581151..582200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10303Ggra10303Gracilaria gracilis GNS1m malegenetig00000016_pilon 581151..582200 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10303.t1.stop1Ggra10303.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 581151..581153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10303.t1.CDS1Ggra10303.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 581151..582200 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10303.t1.exon1Ggra10303.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 581151..582200 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10303.t1.start1Ggra10303.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 582198..582200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10303.t1Ggra10303.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 581151..582200 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10303.t1 ID=Ggra10303.t1|Name=Ggra10303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MNNEYPVNDFVLSTSSSASFRLGVNLHEASINVLFLVDASSSMSDEFPTV
IAELSSLAKQLISELPALVAVAVYAGERSFAGLDSHLPLQSMTSNYTAIL
NTLQSIPSLQLQSGPRTLLRAINDASISSTLDWRGGSARRIVVLVGDTPG
REPACRVYDTDRALTRSTLISNRLLSLGINLIAATVGEPGLDSASAESPQ
CSYRPVCFLSFCERPPPDAGEPIAAGQVSSLVSAVNGSFLTDLNATSLFR
SVLDVVKSGEQPQVDDGMLFRYLDRNLSVHDTCGDRIAITSPALPFIVPA
LSTNTYEFKADLSQHACDSGPFVCTLALAEAIDPELSFNLQTFLVRGCF*
back to top

spliced messenger RNA

>Ggra10303.t1 ID=Ggra10303.t1|Name=Ggra10303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000016_pilon:581151..582200- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAATGAGTACCCCGTCAACGATTTTGTACTTTCGACATCCTCATC
TGCAAGTTTTCGGCTCGGTGTGAATCTACACGAGGCCAGTATCAACGTGC
TCTTTCTGGTGGATGCATCATCGTCAATGAGCGATGAGTTTCCGACAGTC
ATCGCCGAATTATCTTCCCTCGCCAAGCAATTAATCTCTGAACTGCCCGC
TCTGGTCGCAGTGGCCGTGTATGCAGGAGAGCGATCGTTTGCAGGGCTGG
ATTCTCACTTGCCACTACAATCAATGACATCAAACTACACAGCCATTCTA
AACACTCTCCAAAGCATTCCCTCCCTTCAACTACAATCTGGTCCTCGCAC
ACTTCTCAGGGCAATTAATGACGCCTCCATTTCCTCGACCTTAGATTGGA
GAGGAGGTTCTGCTCGCCGAATAGTCGTCTTGGTTGGTGATACGCCAGGT
CGAGAGCCGGCTTGCAGAGTATATGACACTGACAGAGCCCTCACACGTTC
CACTCTCATTTCGAACAGGCTTCTCTCTCTCGGGATAAATTTAATCGCAG
CGACTGTTGGAGAACCTGGATTGGATTCCGCTTCAGCCGAGTCACCTCAG
TGTTCCTACCGTCCCGTGTGCTTTCTATCCTTTTGCGAACGACCTCCACC
AGATGCCGGAGAACCTATCGCTGCGGGACAGGTGTCTTCTCTGGTTAGTG
CAGTAAACGGTTCCTTTCTAACCGATCTGAATGCTACCTCTTTGTTCCGA
TCTGTTCTTGATGTGGTCAAATCTGGTGAGCAGCCTCAAGTCGATGATGG
CATGTTGTTCCGATATCTCGACAGAAATCTATCTGTACATGACACTTGTG
GAGATCGAATTGCAATTACGTCTCCAGCCCTACCGTTCATAGTTCCTGCT
CTCAGTACAAACACATACGAGTTTAAAGCCGATCTTTCTCAACATGCTTG
TGATTCTGGACCATTTGTGTGTACACTGGCTCTTGCTGAAGCAATTGACC
CGGAGCTTTCTTTCAACCTGCAGACTTTTCTAGTAAGGGGTTGTTTTTGA
back to top

protein sequence of Ggra10303.t1

>Ggra10303.t1 ID=Ggra10303.t1|Name=Ggra10303.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MNNEYPVNDFVLSTSSSASFRLGVNLHEASINVLFLVDASSSMSDEFPTV
IAELSSLAKQLISELPALVAVAVYAGERSFAGLDSHLPLQSMTSNYTAIL
NTLQSIPSLQLQSGPRTLLRAINDASISSTLDWRGGSARRIVVLVGDTPG
REPACRVYDTDRALTRSTLISNRLLSLGINLIAATVGEPGLDSASAESPQ
CSYRPVCFLSFCERPPPDAGEPIAAGQVSSLVSAVNGSFLTDLNATSLFR
SVLDVVKSGEQPQVDDGMLFRYLDRNLSVHDTCGDRIAITSPALPFIVPA
LSTNTYEFKADLSQHACDSGPFVCTLALAEAIDPELSFNLQTFLVRGCF*
back to top

mRNA from alignment at tig00000016_pilon:581151..582200-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10303.t1 ID=Ggra10303.t1|Name=Ggra10303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000016_pilon:581151..582200- (Gracilaria gracilis GNS1m male)
ATGAATAATGAGTACCCCGTCAACGATTTTGTACTTTCGACATCCTCATC
TGCAAGTTTTCGGCTCGGTGTGAATCTACACGAGGCCAGTATCAACGTGC
TCTTTCTGGTGGATGCATCATCGTCAATGAGCGATGAGTTTCCGACAGTC
ATCGCCGAATTATCTTCCCTCGCCAAGCAATTAATCTCTGAACTGCCCGC
TCTGGTCGCAGTGGCCGTGTATGCAGGAGAGCGATCGTTTGCAGGGCTGG
ATTCTCACTTGCCACTACAATCAATGACATCAAACTACACAGCCATTCTA
AACACTCTCCAAAGCATTCCCTCCCTTCAACTACAATCTGGTCCTCGCAC
ACTTCTCAGGGCAATTAATGACGCCTCCATTTCCTCGACCTTAGATTGGA
GAGGAGGTTCTGCTCGCCGAATAGTCGTCTTGGTTGGTGATACGCCAGGT
CGAGAGCCGGCTTGCAGAGTATATGACACTGACAGAGCCCTCACACGTTC
CACTCTCATTTCGAACAGGCTTCTCTCTCTCGGGATAAATTTAATCGCAG
CGACTGTTGGAGAACCTGGATTGGATTCCGCTTCAGCCGAGTCACCTCAG
TGTTCCTACCGTCCCGTGTGCTTTCTATCCTTTTGCGAACGACCTCCACC
AGATGCCGGAGAACCTATCGCTGCGGGACAGGTGTCTTCTCTGGTTAGTG
CAGTAAACGGTTCCTTTCTAACCGATCTGAATGCTACCTCTTTGTTCCGA
TCTGTTCTTGATGTGGTCAAATCTGGTGAGCAGCCTCAAGTCGATGATGG
CATGTTGTTCCGATATCTCGACAGAAATCTATCTGTACATGACACTTGTG
GAGATCGAATTGCAATTACGTCTCCAGCCCTACCGTTCATAGTTCCTGCT
CTCAGTACAAACACATACGAGTTTAAAGCCGATCTTTCTCAACATGCTTG
TGATTCTGGACCATTTGTGTGTACACTGGCTCTTGCTGAAGCAATTGACC
CGGAGCTTTCTTTCAACCTGCAGACTTTTCTAGTAAGGGGTTGTTTTTGA
back to top

Coding sequence (CDS) from alignment at tig00000016_pilon:581151..582200-

>Ggra10303.t1 ID=Ggra10303.t1|Name=Ggra10303.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000016_pilon:581151..582200- (Gracilaria gracilis GNS1m male)
ATGAATAATGAGTACCCCGTCAACGATTTTGTACTTTCGACATCCTCATC
TGCAAGTTTTCGGCTCGGTGTGAATCTACACGAGGCCAGTATCAACGTGC
TCTTTCTGGTGGATGCATCATCGTCAATGAGCGATGAGTTTCCGACAGTC
ATCGCCGAATTATCTTCCCTCGCCAAGCAATTAATCTCTGAACTGCCCGC
TCTGGTCGCAGTGGCCGTGTATGCAGGAGAGCGATCGTTTGCAGGGCTGG
ATTCTCACTTGCCACTACAATCAATGACATCAAACTACACAGCCATTCTA
AACACTCTCCAAAGCATTCCCTCCCTTCAACTACAATCTGGTCCTCGCAC
ACTTCTCAGGGCAATTAATGACGCCTCCATTTCCTCGACCTTAGATTGGA
GAGGAGGTTCTGCTCGCCGAATAGTCGTCTTGGTTGGTGATACGCCAGGT
CGAGAGCCGGCTTGCAGAGTATATGACACTGACAGAGCCCTCACACGTTC
CACTCTCATTTCGAACAGGCTTCTCTCTCTCGGGATAAATTTAATCGCAG
CGACTGTTGGAGAACCTGGATTGGATTCCGCTTCAGCCGAGTCACCTCAG
TGTTCCTACCGTCCCGTGTGCTTTCTATCCTTTTGCGAACGACCTCCACC
AGATGCCGGAGAACCTATCGCTGCGGGACAGGTGTCTTCTCTGGTTAGTG
CAGTAAACGGTTCCTTTCTAACCGATCTGAATGCTACCTCTTTGTTCCGA
TCTGTTCTTGATGTGGTCAAATCTGGTGAGCAGCCTCAAGTCGATGATGG
CATGTTGTTCCGATATCTCGACAGAAATCTATCTGTACATGACACTTGTG
GAGATCGAATTGCAATTACGTCTCCAGCCCTACCGTTCATAGTTCCTGCT
CTCAGTACAAACACATACGAGTTTAAAGCCGATCTTTCTCAACATGCTTG
TGATTCTGGACCATTTGTGTGTACACTGGCTCTTGCTGAAGCAATTGACC
CGGAGCTTTCTTTCAACCTGCAGACTTTTCTAGTAAGGGGTTGTTTTTGA
back to top