Ggra10302.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10302.t1
Unique Name	Ggra10302.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	569

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:548547..550253 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	756272.Plabr_3820
PFAMs	An_peroxidase
Max annot lvl	203682\|Planctomycetes
Evalue	4.12e-84
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,2J53M@203682\|Planctomycetes
Description	Animal haem peroxidase
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10302	Ggra10302	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 548547..550253 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10302.t1.stop1	Ggra10302.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 548547..548549 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10302.t1.CDS1	Ggra10302.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 548547..550253 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10302.t1.exon1	Ggra10302.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 548547..550253 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10302.t1.start1	Ggra10302.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 550251..550253 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10302.t1	Ggra10302.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 548547..550253 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:548547..550253-
coding sequence from alignment at tig00000016_pilon:548547..550253-

mRNA sequence

>Ggra10302.t1 ID=Ggra10302.t1|Name=Ggra10302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=569bp
MAPVTSVLILFAFLSLAFAQAPPPGRGVDASFFTALPASPPRSAFFTLST
SPLDNVDPECDALPVRTLSGRCTSAVDPNLGEARRAQFSYLGVDSRNFAG
SGLKSPRVISNIVSDQSGNSRNSRRLNELFVFFGQFIDHDFALSPLSDVE
VDIEVPEDDPDLSVDHLRFERSVRGLVSSASSTERPITVLSSALDLSNVY
GVDSMRNEFLRMPNSCRLKTSAGNNLPFNTGGFANSPSTSASLYIAGDTR
VNEHPMLTTIHTVFLREHNNICDLLEDALPSMDAASMYETARAINIAQYQ
KIVYEEWLPAILGRPLTRYTGYQEDVDPTISLEFTTAGFRVGHTMVGNGV
SRIDENGRPLPLITMEDMFFRDSNLATGDVENFIRGAAGTRAQEVDVQVV
DALRNFLFRNVPEEAGIDLIALNLQRGRDHNVPRFNELRRFFLGSPAGSF
SQITSDPTVQRKLQDAYGTVDNVEAWPGLMAEDKRGAVGLGQTNAELWRT
EFTRLRDGDRFFYLDNARHNQIPQNVLDALPEVDIAIFSGQSMLSRILLR
TSSINRGDVSTGINVFRV*

spliced messenger RNA

>Ggra10302.t1 ID=Ggra10302.t1|Name=Ggra10302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1707bp|location=Sequence derived from alignment at tig00000016_pilon:548547..550253- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCAGTAACATCCGTGCTGATTCTATTCGCCTTCCTGTCTCTCGC
ATTTGCCCAGGCCCCACCACCAGGCAGGGGCGTCGATGCAAGCTTCTTCA
CGGCATTGCCAGCATCACCGCCTCGCAGTGCGTTTTTCACACTCTCCACG
TCACCACTTGACAATGTCGATCCAGAATGTGATGCACTCCCCGTCAGAAC
GCTTTCGGGGCGCTGTACGTCTGCCGTGGACCCTAACCTTGGAGAGGCTC
GACGTGCTCAGTTCAGCTACCTCGGCGTGGATTCCAGAAATTTTGCTGGA
TCTGGATTGAAGAGCCCTCGTGTCATCTCGAATATTGTGTCGGATCAGTC
AGGAAACTCTCGCAACTCGCGTCGTCTCAACGAGCTGTTCGTCTTCTTCG
GACAGTTTATTGATCATGACTTTGCGCTATCACCGCTCTCTGATGTAGAA
GTGGACATCGAAGTGCCCGAAGATGACCCCGATCTCAGTGTTGATCACTT
GCGTTTCGAACGTTCAGTACGAGGTCTTGTGAGTTCCGCTTCCAGTACAG
AGCGTCCCATTACCGTCCTCTCTTCAGCTCTAGACCTTTCTAATGTGTAC
GGTGTCGACTCCATGAGAAATGAGTTTTTGAGGATGCCGAACTCCTGCCG
TCTGAAAACCTCTGCCGGCAATAACCTTCCGTTCAACACTGGTGGGTTCG
CCAACTCTCCATCCACTTCTGCTTCCTTGTACATTGCCGGTGACACAAGG
GTTAACGAGCACCCCATGCTCACAACCATCCACACTGTCTTCCTTCGTGA
ACACAATAACATCTGCGATCTCCTTGAAGACGCGCTTCCCAGTATGGATG
CTGCCAGCATGTACGAGACCGCACGAGCAATCAACATTGCTCAATATCAA
AAGATCGTCTACGAGGAGTGGCTTCCTGCCATCTTGGGACGCCCTCTCAC
TCGATACACCGGTTACCAGGAGGATGTGGATCCCACCATCAGTCTGGAGT
TCACTACCGCTGGCTTCCGTGTTGGCCATACTATGGTGGGTAACGGTGTG
AGCCGCATTGATGAGAACGGTCGTCCTCTGCCGCTCATCACCATGGAAGA
TATGTTTTTCCGCGACAGCAATCTGGCGACCGGTGATGTTGAGAACTTCA
TTCGCGGAGCTGCTGGAACCAGGGCCCAGGAAGTAGATGTTCAAGTTGTT
GACGCGCTGCGAAACTTCCTGTTTAGGAACGTTCCCGAGGAAGCTGGAAT
CGATTTGATCGCACTGAACCTGCAGAGAGGACGGGACCACAACGTGCCCC
GCTTTAATGAGCTCCGAAGGTTTTTCCTTGGCTCTCCGGCTGGCTCATTC
AGCCAAATTACTTCTGATCCTACTGTTCAGAGGAAACTTCAGGATGCTTA
CGGTACTGTGGACAATGTTGAGGCCTGGCCTGGTCTGATGGCAGAAGACA
AGCGTGGAGCCGTTGGGTTGGGTCAAACAAACGCAGAGTTGTGGAGAACA
GAGTTTACGCGACTCCGAGACGGAGATAGGTTCTTCTATCTTGACAATGC
TCGACATAATCAGATTCCTCAAAATGTATTGGATGCTCTGCCGGAAGTTG
ATATTGCTATCTTCTCCGGACAGTCAATGCTGAGCAGGATTCTGCTCCGC
ACATCTTCAATTAACCGCGGTGATGTGTCTACAGGCATCAATGTCTTCCG
AGTGTAG

protein sequence of Ggra10302.t1

>Ggra10302.t1 ID=Ggra10302.t1|Name=Ggra10302.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=569bp
MAPVTSVLILFAFLSLAFAQAPPPGRGVDASFFTALPASPPRSAFFTLST
SPLDNVDPECDALPVRTLSGRCTSAVDPNLGEARRAQFSYLGVDSRNFAG
SGLKSPRVISNIVSDQSGNSRNSRRLNELFVFFGQFIDHDFALSPLSDVE
VDIEVPEDDPDLSVDHLRFERSVRGLVSSASSTERPITVLSSALDLSNVY
GVDSMRNEFLRMPNSCRLKTSAGNNLPFNTGGFANSPSTSASLYIAGDTR
VNEHPMLTTIHTVFLREHNNICDLLEDALPSMDAASMYETARAINIAQYQ
KIVYEEWLPAILGRPLTRYTGYQEDVDPTISLEFTTAGFRVGHTMVGNGV
SRIDENGRPLPLITMEDMFFRDSNLATGDVENFIRGAAGTRAQEVDVQVV
DALRNFLFRNVPEEAGIDLIALNLQRGRDHNVPRFNELRRFFLGSPAGSF
SQITSDPTVQRKLQDAYGTVDNVEAWPGLMAEDKRGAVGLGQTNAELWRT
EFTRLRDGDRFFYLDNARHNQIPQNVLDALPEVDIAIFSGQSMLSRILLR
TSSINRGDVSTGINVFRV*

mRNA from alignment at tig00000016_pilon:548547..550253-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10302.t1 ID=Ggra10302.t1|Name=Ggra10302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1707bp|location=Sequence derived from alignment at tig00000016_pilon:548547..550253- (Gracilaria gracilis GNS1m male)
ATGGCTCCAGTAACATCCGTGCTGATTCTATTCGCCTTCCTGTCTCTCGC
ATTTGCCCAGGCCCCACCACCAGGCAGGGGCGTCGATGCAAGCTTCTTCA
CGGCATTGCCAGCATCACCGCCTCGCAGTGCGTTTTTCACACTCTCCACG
TCACCACTTGACAATGTCGATCCAGAATGTGATGCACTCCCCGTCAGAAC
GCTTTCGGGGCGCTGTACGTCTGCCGTGGACCCTAACCTTGGAGAGGCTC
GACGTGCTCAGTTCAGCTACCTCGGCGTGGATTCCAGAAATTTTGCTGGA
TCTGGATTGAAGAGCCCTCGTGTCATCTCGAATATTGTGTCGGATCAGTC
AGGAAACTCTCGCAACTCGCGTCGTCTCAACGAGCTGTTCGTCTTCTTCG
GACAGTTTATTGATCATGACTTTGCGCTATCACCGCTCTCTGATGTAGAA
GTGGACATCGAAGTGCCCGAAGATGACCCCGATCTCAGTGTTGATCACTT
GCGTTTCGAACGTTCAGTACGAGGTCTTGTGAGTTCCGCTTCCAGTACAG
AGCGTCCCATTACCGTCCTCTCTTCAGCTCTAGACCTTTCTAATGTGTAC
GGTGTCGACTCCATGAGAAATGAGTTTTTGAGGATGCCGAACTCCTGCCG
TCTGAAAACCTCTGCCGGCAATAACCTTCCGTTCAACACTGGTGGGTTCG
CCAACTCTCCATCCACTTCTGCTTCCTTGTACATTGCCGGTGACACAAGG
GTTAACGAGCACCCCATGCTCACAACCATCCACACTGTCTTCCTTCGTGA
ACACAATAACATCTGCGATCTCCTTGAAGACGCGCTTCCCAGTATGGATG
CTGCCAGCATGTACGAGACCGCACGAGCAATCAACATTGCTCAATATCAA
AAGATCGTCTACGAGGAGTGGCTTCCTGCCATCTTGGGACGCCCTCTCAC
TCGATACACCGGTTACCAGGAGGATGTGGATCCCACCATCAGTCTGGAGT
TCACTACCGCTGGCTTCCGTGTTGGCCATACTATGGTGGGTAACGGTGTG
AGCCGCATTGATGAGAACGGTCGTCCTCTGCCGCTCATCACCATGGAAGA
TATGTTTTTCCGCGACAGCAATCTGGCGACCGGTGATGTTGAGAACTTCA
TTCGCGGAGCTGCTGGAACCAGGGCCCAGGAAGTAGATGTTCAAGTTGTT
GACGCGCTGCGAAACTTCCTGTTTAGGAACGTTCCCGAGGAAGCTGGAAT
CGATTTGATCGCACTGAACCTGCAGAGAGGACGGGACCACAACGTGCCCC
GCTTTAATGAGCTCCGAAGGTTTTTCCTTGGCTCTCCGGCTGGCTCATTC
AGCCAAATTACTTCTGATCCTACTGTTCAGAGGAAACTTCAGGATGCTTA
CGGTACTGTGGACAATGTTGAGGCCTGGCCTGGTCTGATGGCAGAAGACA
AGCGTGGAGCCGTTGGGTTGGGTCAAACAAACGCAGAGTTGTGGAGAACA
GAGTTTACGCGACTCCGAGACGGAGATAGGTTCTTCTATCTTGACAATGC
TCGACATAATCAGATTCCTCAAAATGTATTGGATGCTCTGCCGGAAGTTG
ATATTGCTATCTTCTCCGGACAGTCAATGCTGAGCAGGATTCTGCTCCGC
ACATCTTCAATTAACCGCGGTGATGTGTCTACAGGCATCAATGTCTTCCG
AGTGTAG

Coding sequence (CDS) from alignment at tig00000016_pilon:548547..550253-

>Ggra10302.t1 ID=Ggra10302.t1|Name=Ggra10302.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1707bp|location=Sequence derived from alignment at tig00000016_pilon:548547..550253- (Gracilaria gracilis GNS1m male)
ATGGCTCCAGTAACATCCGTGCTGATTCTATTCGCCTTCCTGTCTCTCGC
ATTTGCCCAGGCCCCACCACCAGGCAGGGGCGTCGATGCAAGCTTCTTCA
CGGCATTGCCAGCATCACCGCCTCGCAGTGCGTTTTTCACACTCTCCACG
TCACCACTTGACAATGTCGATCCAGAATGTGATGCACTCCCCGTCAGAAC
GCTTTCGGGGCGCTGTACGTCTGCCGTGGACCCTAACCTTGGAGAGGCTC
GACGTGCTCAGTTCAGCTACCTCGGCGTGGATTCCAGAAATTTTGCTGGA
TCTGGATTGAAGAGCCCTCGTGTCATCTCGAATATTGTGTCGGATCAGTC
AGGAAACTCTCGCAACTCGCGTCGTCTCAACGAGCTGTTCGTCTTCTTCG
GACAGTTTATTGATCATGACTTTGCGCTATCACCGCTCTCTGATGTAGAA
GTGGACATCGAAGTGCCCGAAGATGACCCCGATCTCAGTGTTGATCACTT
GCGTTTCGAACGTTCAGTACGAGGTCTTGTGAGTTCCGCTTCCAGTACAG
AGCGTCCCATTACCGTCCTCTCTTCAGCTCTAGACCTTTCTAATGTGTAC
GGTGTCGACTCCATGAGAAATGAGTTTTTGAGGATGCCGAACTCCTGCCG
TCTGAAAACCTCTGCCGGCAATAACCTTCCGTTCAACACTGGTGGGTTCG
CCAACTCTCCATCCACTTCTGCTTCCTTGTACATTGCCGGTGACACAAGG
GTTAACGAGCACCCCATGCTCACAACCATCCACACTGTCTTCCTTCGTGA
ACACAATAACATCTGCGATCTCCTTGAAGACGCGCTTCCCAGTATGGATG
CTGCCAGCATGTACGAGACCGCACGAGCAATCAACATTGCTCAATATCAA
AAGATCGTCTACGAGGAGTGGCTTCCTGCCATCTTGGGACGCCCTCTCAC
TCGATACACCGGTTACCAGGAGGATGTGGATCCCACCATCAGTCTGGAGT
TCACTACCGCTGGCTTCCGTGTTGGCCATACTATGGTGGGTAACGGTGTG
AGCCGCATTGATGAGAACGGTCGTCCTCTGCCGCTCATCACCATGGAAGA
TATGTTTTTCCGCGACAGCAATCTGGCGACCGGTGATGTTGAGAACTTCA
TTCGCGGAGCTGCTGGAACCAGGGCCCAGGAAGTAGATGTTCAAGTTGTT
GACGCGCTGCGAAACTTCCTGTTTAGGAACGTTCCCGAGGAAGCTGGAAT
CGATTTGATCGCACTGAACCTGCAGAGAGGACGGGACCACAACGTGCCCC
GCTTTAATGAGCTCCGAAGGTTTTTCCTTGGCTCTCCGGCTGGCTCATTC
AGCCAAATTACTTCTGATCCTACTGTTCAGAGGAAACTTCAGGATGCTTA
CGGTACTGTGGACAATGTTGAGGCCTGGCCTGGTCTGATGGCAGAAGACA
AGCGTGGAGCCGTTGGGTTGGGTCAAACAAACGCAGAGTTGTGGAGAACA
GAGTTTACGCGACTCCGAGACGGAGATAGGTTCTTCTATCTTGACAATGC
TCGACATAATCAGATTCCTCAAAATGTATTGGATGCTCTGCCGGAAGTTG
ATATTGCTATCTTCTCCGGACAGTCAATGCTGAGCAGGATTCTGCTCCGC
ACATCTTCAATTAACCGCGGTGATGTGTCTACAGGCATCAATGTCTTCCG
AGTGTAG