Ggra10301.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10301.t1
Unique NameGgra10301.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length517
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:543537..545087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123508.JH636452_gene7034
PFAMsAn_peroxidase,Dockerin_1,SdrD_B
Max annot lvl203682|Planctomycetes
Evalue5.96e-77
EggNOG OGsCOG2373@1|root,COG2373@2|Bacteria,2IY3Z@203682|Planctomycetes
DescriptionAnimal haem peroxidase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10301Ggra10301Gracilaria gracilis GNS1m malegenetig00000016_pilon 543537..545087 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10301.t1.stop1Ggra10301.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 543537..543539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10301.t1.CDS1Ggra10301.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 543537..545087 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10301.t1.exon1Ggra10301.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 543537..545087 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10301.t1.start1Ggra10301.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 545085..545087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10301.t1Ggra10301.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 543537..545087 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10301.t1 ID=Ggra10301.t1|Name=Ggra10301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=517bp
MADVHPECAALSVRTLSGRCTSAIDPSLGESRRAQMSYLDVDSRTFNDAG
LKSARIVSNAVADQRGDMPSRSRINELFVFFGQFIDHDLVSTPASDDKVP
IAVPEDDGRISQSSLLFARSLRQRVSTSSTKERPISVVSSALDLSMVYGV
DEDRNGALREDNSCRLKVSSGEFLPYNQGGFTNSPSNSPSFYLAGDTRVN
EHSMLTVLHTIFVREHNYICSQLQSVNFLTSRSASELYELARAINIAQYQ
KIVYEEWLPIMLGRSMPRYRGYQPSVDPTISVEFSTAGFRVGHTMVGNSI
TRMDAAGRRTSITMRDMFFRASNMQAGDMEDFLRGAMATLAQQVDAKTVD
ALRNFLFSNVREEVGIDLIALNLQRGRDHNVPRYTQLRRFLTGEPTNSFQ
DITRDRSTQAMLQNAYNNLDNVEAWVGLMSEDNSFTSPMGRTNTELWKRE
FERLRDGDRWFYLDNDRHGAIGQDVLNALPLLRAGIFTGLPLFGQILRRN
TQLSFFDIRAGALFRA*
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spliced messenger RNA

>Ggra10301.t1 ID=Ggra10301.t1|Name=Ggra10301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000016_pilon:543537..545087- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATGTCCACCCAGAATGTGCCGCACTCTCTGTTAGGACGCTTTC
AGGGCGTTGTACATCGGCAATCGATCCGTCTTTGGGGGAGTCTCGACGCG
CCCAGATGAGCTATCTCGATGTTGACTCGAGAACATTCAACGATGCTGGA
CTGAAAAGTGCAAGAATAGTGTCCAACGCGGTGGCCGATCAGAGAGGAGA
TATGCCAAGTCGGTCTCGCATCAACGAATTGTTTGTGTTCTTCGGTCAGT
TCATTGATCATGATTTGGTATCCACTCCGGCTTCGGATGACAAAGTTCCT
ATCGCAGTTCCTGAAGATGATGGCAGAATTTCGCAATCAAGTCTATTATT
TGCTCGCTCCCTCCGACAAAGAGTGAGTACATCGTCCACAAAGGAACGCC
CCATCTCGGTGGTATCATCGGCCTTGGATCTTTCAATGGTCTACGGCGTT
GACGAGGACAGAAATGGCGCCCTTCGTGAGGACAACTCGTGCAGGCTCAA
GGTATCGAGTGGTGAATTCTTGCCGTACAACCAAGGCGGCTTCACGAACT
CCCCATCAAATTCACCGTCGTTCTATTTAGCTGGTGATACTCGGGTGAAC
GAGCACTCAATGCTGACGGTGTTGCACACAATTTTTGTTCGGGAGCACAA
CTACATCTGCTCTCAGCTTCAATCGGTGAACTTCCTTACAAGCAGGTCAG
CATCAGAGCTCTACGAGCTTGCTCGGGCAATAAACATTGCGCAGTATCAG
AAGATTGTCTACGAAGAATGGCTACCAATAATGTTGGGGCGCAGTATGCC
GAGATATCGAGGATACCAACCGTCGGTCGATCCTACCATCAGCGTCGAAT
TCTCAACCGCTGGTTTCAGAGTTGGACACACAATGGTGGGAAACAGTATC
ACTCGGATGGACGCGGCGGGCAGACGCACGTCTATCACCATGAGGGACAT
GTTCTTTAGGGCAAGCAATATGCAAGCAGGTGACATGGAAGACTTCCTTC
GGGGTGCAATGGCCACGCTTGCGCAACAAGTGGATGCCAAAACTGTTGAC
GCCCTGCGAAATTTCCTGTTTTCCAACGTGAGAGAAGAAGTAGGCATTGA
CCTCATCGCTCTCAACCTCCAGCGAGGTCGCGATCACAACGTACCCCGCT
ACACGCAATTACGGCGGTTCCTGACTGGAGAACCAACAAACTCTTTCCAG
GATATCACACGTGATCGATCGACCCAAGCCATGCTGCAAAACGCTTACAA
CAACCTGGACAACGTGGAAGCCTGGGTGGGTCTCATGTCGGAGGACAACA
GTTTCACTTCGCCCATGGGCAGAACCAACACCGAGCTTTGGAAGCGCGAA
TTCGAACGGCTTCGCGATGGTGATCGATGGTTCTACCTCGACAACGACCG
GCACGGAGCGATTGGACAAGACGTGCTGAACGCGCTGCCGTTGCTTCGCG
CTGGTATTTTCACTGGTTTGCCGCTTTTTGGACAAATTCTGAGGCGTAAT
ACCCAACTTTCGTTCTTCGACATCCGTGCTGGCGCACTGTTTCGGGCGTG
A
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protein sequence of Ggra10301.t1

>Ggra10301.t1 ID=Ggra10301.t1|Name=Ggra10301.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=517bp
MADVHPECAALSVRTLSGRCTSAIDPSLGESRRAQMSYLDVDSRTFNDAG
LKSARIVSNAVADQRGDMPSRSRINELFVFFGQFIDHDLVSTPASDDKVP
IAVPEDDGRISQSSLLFARSLRQRVSTSSTKERPISVVSSALDLSMVYGV
DEDRNGALREDNSCRLKVSSGEFLPYNQGGFTNSPSNSPSFYLAGDTRVN
EHSMLTVLHTIFVREHNYICSQLQSVNFLTSRSASELYELARAINIAQYQ
KIVYEEWLPIMLGRSMPRYRGYQPSVDPTISVEFSTAGFRVGHTMVGNSI
TRMDAAGRRTSITMRDMFFRASNMQAGDMEDFLRGAMATLAQQVDAKTVD
ALRNFLFSNVREEVGIDLIALNLQRGRDHNVPRYTQLRRFLTGEPTNSFQ
DITRDRSTQAMLQNAYNNLDNVEAWVGLMSEDNSFTSPMGRTNTELWKRE
FERLRDGDRWFYLDNDRHGAIGQDVLNALPLLRAGIFTGLPLFGQILRRN
TQLSFFDIRAGALFRA*
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mRNA from alignment at tig00000016_pilon:543537..545087-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10301.t1 ID=Ggra10301.t1|Name=Ggra10301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000016_pilon:543537..545087- (Gracilaria gracilis GNS1m male)
ATGGCCGATGTCCACCCAGAATGTGCCGCACTCTCTGTTAGGACGCTTTC
AGGGCGTTGTACATCGGCAATCGATCCGTCTTTGGGGGAGTCTCGACGCG
CCCAGATGAGCTATCTCGATGTTGACTCGAGAACATTCAACGATGCTGGA
CTGAAAAGTGCAAGAATAGTGTCCAACGCGGTGGCCGATCAGAGAGGAGA
TATGCCAAGTCGGTCTCGCATCAACGAATTGTTTGTGTTCTTCGGTCAGT
TCATTGATCATGATTTGGTATCCACTCCGGCTTCGGATGACAAAGTTCCT
ATCGCAGTTCCTGAAGATGATGGCAGAATTTCGCAATCAAGTCTATTATT
TGCTCGCTCCCTCCGACAAAGAGTGAGTACATCGTCCACAAAGGAACGCC
CCATCTCGGTGGTATCATCGGCCTTGGATCTTTCAATGGTCTACGGCGTT
GACGAGGACAGAAATGGCGCCCTTCGTGAGGACAACTCGTGCAGGCTCAA
GGTATCGAGTGGTGAATTCTTGCCGTACAACCAAGGCGGCTTCACGAACT
CCCCATCAAATTCACCGTCGTTCTATTTAGCTGGTGATACTCGGGTGAAC
GAGCACTCAATGCTGACGGTGTTGCACACAATTTTTGTTCGGGAGCACAA
CTACATCTGCTCTCAGCTTCAATCGGTGAACTTCCTTACAAGCAGGTCAG
CATCAGAGCTCTACGAGCTTGCTCGGGCAATAAACATTGCGCAGTATCAG
AAGATTGTCTACGAAGAATGGCTACCAATAATGTTGGGGCGCAGTATGCC
GAGATATCGAGGATACCAACCGTCGGTCGATCCTACCATCAGCGTCGAAT
TCTCAACCGCTGGTTTCAGAGTTGGACACACAATGGTGGGAAACAGTATC
ACTCGGATGGACGCGGCGGGCAGACGCACGTCTATCACCATGAGGGACAT
GTTCTTTAGGGCAAGCAATATGCAAGCAGGTGACATGGAAGACTTCCTTC
GGGGTGCAATGGCCACGCTTGCGCAACAAGTGGATGCCAAAACTGTTGAC
GCCCTGCGAAATTTCCTGTTTTCCAACGTGAGAGAAGAAGTAGGCATTGA
CCTCATCGCTCTCAACCTCCAGCGAGGTCGCGATCACAACGTACCCCGCT
ACACGCAATTACGGCGGTTCCTGACTGGAGAACCAACAAACTCTTTCCAG
GATATCACACGTGATCGATCGACCCAAGCCATGCTGCAAAACGCTTACAA
CAACCTGGACAACGTGGAAGCCTGGGTGGGTCTCATGTCGGAGGACAACA
GTTTCACTTCGCCCATGGGCAGAACCAACACCGAGCTTTGGAAGCGCGAA
TTCGAACGGCTTCGCGATGGTGATCGATGGTTCTACCTCGACAACGACCG
GCACGGAGCGATTGGACAAGACGTGCTGAACGCGCTGCCGTTGCTTCGCG
CTGGTATTTTCACTGGTTTGCCGCTTTTTGGACAAATTCTGAGGCGTAAT
ACCCAACTTTCGTTCTTCGACATCCGTGCTGGCGCACTGTTTCGGGCGTG
A
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Coding sequence (CDS) from alignment at tig00000016_pilon:543537..545087-

>Ggra10301.t1 ID=Ggra10301.t1|Name=Ggra10301.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000016_pilon:543537..545087- (Gracilaria gracilis GNS1m male)
ATGGCCGATGTCCACCCAGAATGTGCCGCACTCTCTGTTAGGACGCTTTC
AGGGCGTTGTACATCGGCAATCGATCCGTCTTTGGGGGAGTCTCGACGCG
CCCAGATGAGCTATCTCGATGTTGACTCGAGAACATTCAACGATGCTGGA
CTGAAAAGTGCAAGAATAGTGTCCAACGCGGTGGCCGATCAGAGAGGAGA
TATGCCAAGTCGGTCTCGCATCAACGAATTGTTTGTGTTCTTCGGTCAGT
TCATTGATCATGATTTGGTATCCACTCCGGCTTCGGATGACAAAGTTCCT
ATCGCAGTTCCTGAAGATGATGGCAGAATTTCGCAATCAAGTCTATTATT
TGCTCGCTCCCTCCGACAAAGAGTGAGTACATCGTCCACAAAGGAACGCC
CCATCTCGGTGGTATCATCGGCCTTGGATCTTTCAATGGTCTACGGCGTT
GACGAGGACAGAAATGGCGCCCTTCGTGAGGACAACTCGTGCAGGCTCAA
GGTATCGAGTGGTGAATTCTTGCCGTACAACCAAGGCGGCTTCACGAACT
CCCCATCAAATTCACCGTCGTTCTATTTAGCTGGTGATACTCGGGTGAAC
GAGCACTCAATGCTGACGGTGTTGCACACAATTTTTGTTCGGGAGCACAA
CTACATCTGCTCTCAGCTTCAATCGGTGAACTTCCTTACAAGCAGGTCAG
CATCAGAGCTCTACGAGCTTGCTCGGGCAATAAACATTGCGCAGTATCAG
AAGATTGTCTACGAAGAATGGCTACCAATAATGTTGGGGCGCAGTATGCC
GAGATATCGAGGATACCAACCGTCGGTCGATCCTACCATCAGCGTCGAAT
TCTCAACCGCTGGTTTCAGAGTTGGACACACAATGGTGGGAAACAGTATC
ACTCGGATGGACGCGGCGGGCAGACGCACGTCTATCACCATGAGGGACAT
GTTCTTTAGGGCAAGCAATATGCAAGCAGGTGACATGGAAGACTTCCTTC
GGGGTGCAATGGCCACGCTTGCGCAACAAGTGGATGCCAAAACTGTTGAC
GCCCTGCGAAATTTCCTGTTTTCCAACGTGAGAGAAGAAGTAGGCATTGA
CCTCATCGCTCTCAACCTCCAGCGAGGTCGCGATCACAACGTACCCCGCT
ACACGCAATTACGGCGGTTCCTGACTGGAGAACCAACAAACTCTTTCCAG
GATATCACACGTGATCGATCGACCCAAGCCATGCTGCAAAACGCTTACAA
CAACCTGGACAACGTGGAAGCCTGGGTGGGTCTCATGTCGGAGGACAACA
GTTTCACTTCGCCCATGGGCAGAACCAACACCGAGCTTTGGAAGCGCGAA
TTCGAACGGCTTCGCGATGGTGATCGATGGTTCTACCTCGACAACGACCG
GCACGGAGCGATTGGACAAGACGTGCTGAACGCGCTGCCGTTGCTTCGCG
CTGGTATTTTCACTGGTTTGCCGCTTTTTGGACAAATTCTGAGGCGTAAT
ACCCAACTTTCGTTCTTCGACATCCGTGCTGGCGCACTGTTTCGGGCGTG
A
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