Ggra10300.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10300.t1
Unique NameGgra10300.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:541809..542898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5346.XP_001839332.2
Max annot lvl4751|Fungi
Evalue1.12e-10
EggNOG OGs2ENSW@1|root,2SS4X@2759|Eukaryota,3APD1@33154|Opisthokonta,3PF5V@4751|Fungi,3V5R7@5204|Basidiomycota,22C3I@155619|Agaricomycetes
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10300Ggra10300Gracilaria gracilis GNS1m malegenetig00000016_pilon 541809..542898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10300.t1Ggra10300.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 541809..542898 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10300.t1.start1Ggra10300.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 541809..541811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10300.t1.CDS1Ggra10300.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 541809..541833 +
Ggra10300.t1.CDS2Ggra10300.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 541931..542898 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10300.t1.exon1Ggra10300.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 541809..541833 +
Ggra10300.t1.exon2Ggra10300.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 541931..542898 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10300.t1.intron1Ggra10300.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 541834..541930 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10300.t1.stop1Ggra10300.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 542896..542898 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10300.t1 ID=Ggra10300.t1|Name=Ggra10300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp
MSIDLFFPENRSRAQRLTELVDDITAMQRELNLDSDNLDAKDENMRPLMN
NIMDKNGITTFDELVEKAIQVLTPDEAQDIRDMLEEIKATNSAIEQTFGV
FALLTLSATTASASAKAIQLLRSGALVTSTRLVVRGIARAISGGANALEE
AATLFRAANTASNVLLRNFETTTKIGRITKAVKVAGKVMAVVGFFADAIV
AIIAAVEGAKQKEELQNAIKENFTKRLEVALINELGTAAVSFNGNLESIL
LLENQIAGNPDLEVALRPSIDLLTDNVVQSMEDRFEEITYEGAAETFTQL
DSSRNSYTDDDPSVADAIKKLDSEESVAFS*
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spliced messenger RNA

>Ggra10300.t1 ID=Ggra10300.t1|Name=Ggra10300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000016_pilon:541809..542898+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTATTGATCTTTTCTTTCCAGAGAATCGAAGCCGTGCTCAACGTCT
TACAGAGCTGGTCGACGATATCACTGCCATGCAACGGGAGCTCAATCTCG
ACTCCGACAACCTTGATGCCAAAGATGAGAACATGAGGCCTCTAATGAAC
AATATCATGGACAAGAATGGCATCACGACGTTTGATGAGCTCGTTGAAAA
GGCAATTCAGGTACTAACTCCAGATGAAGCACAGGACATCAGAGACATGC
TCGAGGAGATTAAGGCAACGAATTCTGCAATCGAGCAAACCTTTGGTGTT
TTTGCCCTGCTGACACTCAGTGCGACCACTGCCTCCGCCTCAGCTAAAGC
CATCCAGTTGCTCAGGAGTGGTGCTCTGGTTACTTCGACTCGTCTGGTAG
TACGTGGTATCGCTCGGGCCATATCTGGCGGTGCTAATGCTCTTGAAGAA
GCTGCTACTCTTTTCAGGGCAGCAAACACGGCCTCCAATGTTCTCCTTCG
AAACTTCGAGACCACCACGAAAATTGGACGTATAACAAAGGCCGTGAAGG
TGGCTGGAAAGGTGATGGCTGTAGTTGGTTTCTTTGCAGATGCAATTGTG
GCAATTATTGCGGCTGTCGAAGGTGCAAAGCAGAAGGAGGAGCTTCAGAA
TGCCATCAAAGAAAATTTCACCAAACGTCTTGAAGTGGCATTGATCAATG
AGCTTGGCACAGCTGCTGTATCGTTCAATGGCAACTTGGAGTCGATCCTA
CTTCTGGAGAACCAGATCGCTGGTAATCCAGATTTGGAGGTTGCTCTTCG
CCCGTCTATAGATCTTCTCACCGACAATGTGGTGCAATCCATGGAAGATA
GGTTCGAAGAAATTACGTATGAGGGTGCGGCTGAAACGTTCACGCAGTTG
GATAGTAGCCGTAATAGCTACACGGATGATGATCCATCTGTGGCCGACGC
TATCAAGAAGCTGGACTCCGAAGAGAGTGTTGCTTTCAGCTAA
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protein sequence of Ggra10300.t1

>Ggra10300.t1 ID=Ggra10300.t1|Name=Ggra10300.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=331bp
MSIDLFFPENRSRAQRLTELVDDITAMQRELNLDSDNLDAKDENMRPLMN
NIMDKNGITTFDELVEKAIQVLTPDEAQDIRDMLEEIKATNSAIEQTFGV
FALLTLSATTASASAKAIQLLRSGALVTSTRLVVRGIARAISGGANALEE
AATLFRAANTASNVLLRNFETTTKIGRITKAVKVAGKVMAVVGFFADAIV
AIIAAVEGAKQKEELQNAIKENFTKRLEVALINELGTAAVSFNGNLESIL
LLENQIAGNPDLEVALRPSIDLLTDNVVQSMEDRFEEITYEGAAETFTQL
DSSRNSYTDDDPSVADAIKKLDSEESVAFS*
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mRNA from alignment at tig00000016_pilon:541809..542898+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10300.t1 ID=Ggra10300.t1|Name=Ggra10300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1090bp|location=Sequence derived from alignment at tig00000016_pilon:541809..542898+ (Gracilaria gracilis GNS1m male)
ATGTCTATTGATCTTTTCTTTCCAGGTATGTTTCCGAATTCATAAGCCCC
CATTCGATTCTGGCTTTCTTGCAACACACATATCCTGACCACAGCTGATC
TCAATATCTTTGGATTATGCAGAGAATCGAAGCCGTGCTCAACGTCTTAC
AGAGCTGGTCGACGATATCACTGCCATGCAACGGGAGCTCAATCTCGACT
CCGACAACCTTGATGCCAAAGATGAGAACATGAGGCCTCTAATGAACAAT
ATCATGGACAAGAATGGCATCACGACGTTTGATGAGCTCGTTGAAAAGGC
AATTCAGGTACTAACTCCAGATGAAGCACAGGACATCAGAGACATGCTCG
AGGAGATTAAGGCAACGAATTCTGCAATCGAGCAAACCTTTGGTGTTTTT
GCCCTGCTGACACTCAGTGCGACCACTGCCTCCGCCTCAGCTAAAGCCAT
CCAGTTGCTCAGGAGTGGTGCTCTGGTTACTTCGACTCGTCTGGTAGTAC
GTGGTATCGCTCGGGCCATATCTGGCGGTGCTAATGCTCTTGAAGAAGCT
GCTACTCTTTTCAGGGCAGCAAACACGGCCTCCAATGTTCTCCTTCGAAA
CTTCGAGACCACCACGAAAATTGGACGTATAACAAAGGCCGTGAAGGTGG
CTGGAAAGGTGATGGCTGTAGTTGGTTTCTTTGCAGATGCAATTGTGGCA
ATTATTGCGGCTGTCGAAGGTGCAAAGCAGAAGGAGGAGCTTCAGAATGC
CATCAAAGAAAATTTCACCAAACGTCTTGAAGTGGCATTGATCAATGAGC
TTGGCACAGCTGCTGTATCGTTCAATGGCAACTTGGAGTCGATCCTACTT
CTGGAGAACCAGATCGCTGGTAATCCAGATTTGGAGGTTGCTCTTCGCCC
GTCTATAGATCTTCTCACCGACAATGTGGTGCAATCCATGGAAGATAGGT
TCGAAGAAATTACGTATGAGGGTGCGGCTGAAACGTTCACGCAGTTGGAT
AGTAGCCGTAATAGCTACACGGATGATGATCCATCTGTGGCCGACGCTAT
CAAGAAGCTGGACTCCGAAGAGAGTGTTGCTTTCAGCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:541809..542898+

>Ggra10300.t1 ID=Ggra10300.t1|Name=Ggra10300.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00000016_pilon:541809..542898+ (Gracilaria gracilis GNS1m male)
ATGTCTATTGATCTTTTCTTTCCAGAGAATCGAAGCCGTGCTCAACGTCT
TACAGAGCTGGTCGACGATATCACTGCCATGCAACGGGAGCTCAATCTCG
ACTCCGACAACCTTGATGCCAAAGATGAGAACATGAGGCCTCTAATGAAC
AATATCATGGACAAGAATGGCATCACGACGTTTGATGAGCTCGTTGAAAA
GGCAATTCAGGTACTAACTCCAGATGAAGCACAGGACATCAGAGACATGC
TCGAGGAGATTAAGGCAACGAATTCTGCAATCGAGCAAACCTTTGGTGTT
TTTGCCCTGCTGACACTCAGTGCGACCACTGCCTCCGCCTCAGCTAAAGC
CATCCAGTTGCTCAGGAGTGGTGCTCTGGTTACTTCGACTCGTCTGGTAG
TACGTGGTATCGCTCGGGCCATATCTGGCGGTGCTAATGCTCTTGAAGAA
GCTGCTACTCTTTTCAGGGCAGCAAACACGGCCTCCAATGTTCTCCTTCG
AAACTTCGAGACCACCACGAAAATTGGACGTATAACAAAGGCCGTGAAGG
TGGCTGGAAAGGTGATGGCTGTAGTTGGTTTCTTTGCAGATGCAATTGTG
GCAATTATTGCGGCTGTCGAAGGTGCAAAGCAGAAGGAGGAGCTTCAGAA
TGCCATCAAAGAAAATTTCACCAAACGTCTTGAAGTGGCATTGATCAATG
AGCTTGGCACAGCTGCTGTATCGTTCAATGGCAACTTGGAGTCGATCCTA
CTTCTGGAGAACCAGATCGCTGGTAATCCAGATTTGGAGGTTGCTCTTCG
CCCGTCTATAGATCTTCTCACCGACAATGTGGTGCAATCCATGGAAGATA
GGTTCGAAGAAATTACGTATGAGGGTGCGGCTGAAACGTTCACGCAGTTG
GATAGTAGCCGTAATAGCTACACGGATGATGATCCATCTGTGGCCGACGC
TATCAAGAAGCTGGACTCCGAAGAGAGTGTTGCTTTCAGCTAA
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