Ggra10299.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10299.t1
Unique NameGgra10299.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:539101..540267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog101028.EKJ69766
Max annot lvl4751|Fungi
Evalue8.22e-18
EggNOG OGs2E3RF@1|root,2SAS0@2759|Eukaryota,3A8P8@33154|Opisthokonta,3P73Q@4751|Fungi,3QZH3@4890|Ascomycota,21G8J@147550|Sordariomycetes
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10299Ggra10299Gracilaria gracilis GNS1m malegenetig00000016_pilon 539101..540267 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10299.t1.stop1Ggra10299.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 539101..539103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10299.t1.CDS1Ggra10299.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 539101..540267 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10299.t1.exon1Ggra10299.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 539101..540267 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10299.t1.start1Ggra10299.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 540265..540267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10299.t1Ggra10299.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 539101..540267 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10299.t1 ID=Ggra10299.t1|Name=Ggra10299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MGNTMSDMFYPDNPDRRRRAEELYSDIKGIQREYGVLRQEYMKTAGQMES
LMNEILKSLGFSSVDELNQAARQSLSGQALKDFDDLMRKMETNNRVDGII
SGVASLVSLGGAVVVGVLVMMGTITLATGGAALAALGAIFAIVAVAALIA
GAIQGAQMRKKLRDNIRENFQNRREAKLSLEQMRVVVYWSALLKALLGTI
NVTKGQGYIIAQFKKFSKLLSGPKRMFDNVTLASVDTQLRKLDSERRSWT
NEDPKTRYSRSFARSFDTSSEEATEGFVKVRLSSVQSEDGTEKVLDDNED
VVIEMQTETTEKSAIVWLKKNEKYVSLYDEGDFISLKEVQKDNAEYFVEG
QDETLVESCMKVKLIDLSPQGMGGRLFIAQAQFLAPAA*
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spliced messenger RNA

>Ggra10299.t1 ID=Ggra10299.t1|Name=Ggra10299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000016_pilon:539101..540267- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAACACAATGAGTGACATGTTTTACCCTGATAACCCCGATCGTCG
CAGAAGAGCAGAAGAGTTGTATTCTGACATAAAGGGTATCCAACGGGAGT
ATGGTGTATTGCGACAGGAGTACATGAAAACTGCAGGTCAAATGGAATCG
CTGATGAACGAGATCTTGAAATCTCTTGGTTTCAGTTCTGTCGATGAACT
GAATCAAGCAGCACGTCAAAGTTTATCCGGTCAGGCATTGAAAGATTTTG
ATGACCTTATGAGAAAGATGGAAACAAACAACAGAGTGGACGGGATTATC
AGTGGTGTCGCTTCTCTCGTGTCCCTCGGCGGAGCTGTCGTCGTTGGCGT
TTTGGTAATGATGGGGACAATCACTCTGGCGACTGGTGGAGCCGCTTTGG
CAGCTCTCGGCGCTATCTTCGCCATTGTGGCCGTAGCGGCCTTGATCGCG
GGTGCTATTCAAGGTGCCCAGATGAGAAAGAAGCTTAGGGATAATATTCG
TGAGAACTTTCAGAACCGAAGAGAGGCAAAGTTGTCTCTGGAACAAATGC
GCGTGGTTGTATACTGGTCAGCACTTCTGAAGGCCTTGTTGGGAACAATT
AATGTTACCAAGGGCCAGGGGTACATCATTGCACAGTTTAAGAAATTTTC
CAAGCTTCTTTCCGGGCCCAAACGGATGTTTGATAATGTGACATTGGCTT
CTGTGGACACGCAACTACGAAAACTGGATTCGGAGAGACGAAGCTGGACA
AATGAAGACCCAAAAACGCGTTATAGCAGAAGCTTTGCGCGGTCTTTTGA
TACCAGCTCAGAAGAGGCAACTGAAGGCTTTGTTAAGGTTAGGTTGAGCT
CCGTTCAATCAGAAGACGGGACGGAGAAAGTACTCGATGACAATGAGGAT
GTCGTTATCGAAATGCAAACCGAAACAACGGAGAAGTCTGCTATTGTGTG
GCTGAAAAAGAATGAGAAGTATGTTAGTCTGTACGATGAGGGAGATTTCA
TCTCATTAAAGGAGGTCCAGAAAGATAATGCAGAGTACTTCGTCGAAGGT
CAGGATGAGACTCTTGTAGAAAGCTGTATGAAGGTGAAGCTGATTGACTT
GTCTCCACAAGGAATGGGAGGCAGATTGTTCATTGCACAGGCTCAATTCT
TGGCTCCAGCTGCTTAG
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protein sequence of Ggra10299.t1

>Ggra10299.t1 ID=Ggra10299.t1|Name=Ggra10299.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MGNTMSDMFYPDNPDRRRRAEELYSDIKGIQREYGVLRQEYMKTAGQMES
LMNEILKSLGFSSVDELNQAARQSLSGQALKDFDDLMRKMETNNRVDGII
SGVASLVSLGGAVVVGVLVMMGTITLATGGAALAALGAIFAIVAVAALIA
GAIQGAQMRKKLRDNIRENFQNRREAKLSLEQMRVVVYWSALLKALLGTI
NVTKGQGYIIAQFKKFSKLLSGPKRMFDNVTLASVDTQLRKLDSERRSWT
NEDPKTRYSRSFARSFDTSSEEATEGFVKVRLSSVQSEDGTEKVLDDNED
VVIEMQTETTEKSAIVWLKKNEKYVSLYDEGDFISLKEVQKDNAEYFVEG
QDETLVESCMKVKLIDLSPQGMGGRLFIAQAQFLAPAA*
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mRNA from alignment at tig00000016_pilon:539101..540267-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10299.t1 ID=Ggra10299.t1|Name=Ggra10299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000016_pilon:539101..540267- (Gracilaria gracilis GNS1m male)
ATGGGAAACACAATGAGTGACATGTTTTACCCTGATAACCCCGATCGTCG
CAGAAGAGCAGAAGAGTTGTATTCTGACATAAAGGGTATCCAACGGGAGT
ATGGTGTATTGCGACAGGAGTACATGAAAACTGCAGGTCAAATGGAATCG
CTGATGAACGAGATCTTGAAATCTCTTGGTTTCAGTTCTGTCGATGAACT
GAATCAAGCAGCACGTCAAAGTTTATCCGGTCAGGCATTGAAAGATTTTG
ATGACCTTATGAGAAAGATGGAAACAAACAACAGAGTGGACGGGATTATC
AGTGGTGTCGCTTCTCTCGTGTCCCTCGGCGGAGCTGTCGTCGTTGGCGT
TTTGGTAATGATGGGGACAATCACTCTGGCGACTGGTGGAGCCGCTTTGG
CAGCTCTCGGCGCTATCTTCGCCATTGTGGCCGTAGCGGCCTTGATCGCG
GGTGCTATTCAAGGTGCCCAGATGAGAAAGAAGCTTAGGGATAATATTCG
TGAGAACTTTCAGAACCGAAGAGAGGCAAAGTTGTCTCTGGAACAAATGC
GCGTGGTTGTATACTGGTCAGCACTTCTGAAGGCCTTGTTGGGAACAATT
AATGTTACCAAGGGCCAGGGGTACATCATTGCACAGTTTAAGAAATTTTC
CAAGCTTCTTTCCGGGCCCAAACGGATGTTTGATAATGTGACATTGGCTT
CTGTGGACACGCAACTACGAAAACTGGATTCGGAGAGACGAAGCTGGACA
AATGAAGACCCAAAAACGCGTTATAGCAGAAGCTTTGCGCGGTCTTTTGA
TACCAGCTCAGAAGAGGCAACTGAAGGCTTTGTTAAGGTTAGGTTGAGCT
CCGTTCAATCAGAAGACGGGACGGAGAAAGTACTCGATGACAATGAGGAT
GTCGTTATCGAAATGCAAACCGAAACAACGGAGAAGTCTGCTATTGTGTG
GCTGAAAAAGAATGAGAAGTATGTTAGTCTGTACGATGAGGGAGATTTCA
TCTCATTAAAGGAGGTCCAGAAAGATAATGCAGAGTACTTCGTCGAAGGT
CAGGATGAGACTCTTGTAGAAAGCTGTATGAAGGTGAAGCTGATTGACTT
GTCTCCACAAGGAATGGGAGGCAGATTGTTCATTGCACAGGCTCAATTCT
TGGCTCCAGCTGCTTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:539101..540267-

>Ggra10299.t1 ID=Ggra10299.t1|Name=Ggra10299.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000016_pilon:539101..540267- (Gracilaria gracilis GNS1m male)
ATGGGAAACACAATGAGTGACATGTTTTACCCTGATAACCCCGATCGTCG
CAGAAGAGCAGAAGAGTTGTATTCTGACATAAAGGGTATCCAACGGGAGT
ATGGTGTATTGCGACAGGAGTACATGAAAACTGCAGGTCAAATGGAATCG
CTGATGAACGAGATCTTGAAATCTCTTGGTTTCAGTTCTGTCGATGAACT
GAATCAAGCAGCACGTCAAAGTTTATCCGGTCAGGCATTGAAAGATTTTG
ATGACCTTATGAGAAAGATGGAAACAAACAACAGAGTGGACGGGATTATC
AGTGGTGTCGCTTCTCTCGTGTCCCTCGGCGGAGCTGTCGTCGTTGGCGT
TTTGGTAATGATGGGGACAATCACTCTGGCGACTGGTGGAGCCGCTTTGG
CAGCTCTCGGCGCTATCTTCGCCATTGTGGCCGTAGCGGCCTTGATCGCG
GGTGCTATTCAAGGTGCCCAGATGAGAAAGAAGCTTAGGGATAATATTCG
TGAGAACTTTCAGAACCGAAGAGAGGCAAAGTTGTCTCTGGAACAAATGC
GCGTGGTTGTATACTGGTCAGCACTTCTGAAGGCCTTGTTGGGAACAATT
AATGTTACCAAGGGCCAGGGGTACATCATTGCACAGTTTAAGAAATTTTC
CAAGCTTCTTTCCGGGCCCAAACGGATGTTTGATAATGTGACATTGGCTT
CTGTGGACACGCAACTACGAAAACTGGATTCGGAGAGACGAAGCTGGACA
AATGAAGACCCAAAAACGCGTTATAGCAGAAGCTTTGCGCGGTCTTTTGA
TACCAGCTCAGAAGAGGCAACTGAAGGCTTTGTTAAGGTTAGGTTGAGCT
CCGTTCAATCAGAAGACGGGACGGAGAAAGTACTCGATGACAATGAGGAT
GTCGTTATCGAAATGCAAACCGAAACAACGGAGAAGTCTGCTATTGTGTG
GCTGAAAAAGAATGAGAAGTATGTTAGTCTGTACGATGAGGGAGATTTCA
TCTCATTAAAGGAGGTCCAGAAAGATAATGCAGAGTACTTCGTCGAAGGT
CAGGATGAGACTCTTGTAGAAAGCTGTATGAAGGTGAAGCTGATTGACTT
GTCTCCACAAGGAATGGGAGGCAGATTGTTCATTGCACAGGCTCAATTCT
TGGCTCCAGCTGCTTAG
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