Ggra10295.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10295.t1
Unique NameGgra10295.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:409266..410081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr38124
PFAMsGST_N_3,Glutaredoxin2_C
Max annot lvl2836|Bacillariophyta
Evalue2.75e-61
EggNOG OGsCOG2999@1|root,2RYF1@2759|Eukaryota,2XBI3@2836|Bacillariophyta
DescriptionGlutathione S-transferase, N-terminal domain
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10295Ggra10295Gracilaria gracilis GNS1m malegenetig00000016_pilon 409266..410081 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10295.t1.stop1Ggra10295.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 409266..409268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10295.t1.CDS1Ggra10295.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 409266..410081 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10295.t1.exon1Ggra10295.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 409266..410081 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10295.t1.start1Ggra10295.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 410079..410081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10295.t1Ggra10295.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 409266..410081 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10295.t1 ID=Ggra10295.t1|Name=Ggra10295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=272bp
MAFIPPTPLNRHPAVSVSNPSTASPRPVTHFVMTTPPVRPARVVPNPLPN
LLVYDHCPFCVRVRHLLGLKNVKYNLIWLASDDVHTPTSLVGRKIVPIFQ
PQGAHGSSQDESLDICAAIDSDARYGPPGLLKPASGAKHFAQWIEDFDMT
MRRLTRVRFVRAPLPELVFADARESFMAKYPLKDPDGYQANMDNSPAYIA
EIQRSIHELGEKIHSPYHCSPGGISYDDIILFPRLRNLTIVKGLELPPKI
RDYVEYQATAADVPLYDNCAI*
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spliced messenger RNA

>Ggra10295.t1 ID=Ggra10295.t1|Name=Ggra10295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000016_pilon:409266..410081- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCATCCCCCCGACTCCCCTCAATCGTCACCCCGCCGTCTCCGT
CTCCAACCCTTCTACCGCGTCCCCGCGACCCGTGACACATTTTGTCATGA
CGACGCCGCCCGTGCGGCCGGCTCGCGTCGTCCCCAACCCGTTGCCCAAC
CTGCTGGTATACGATCACTGCCCGTTCTGTGTGCGAGTGCGCCACCTTCT
AGGGCTCAAGAACGTCAAGTATAACCTCATTTGGCTGGCCAGCGACGACG
TCCACACCCCCACATCATTGGTAGGCCGCAAGATCGTGCCCATCTTCCAG
CCGCAAGGCGCCCACGGTTCATCGCAAGATGAGAGCCTGGACATCTGTGC
CGCCATCGATTCGGATGCTCGCTACGGGCCGCCCGGCTTGCTCAAACCAG
CATCTGGTGCCAAGCATTTTGCTCAGTGGATTGAGGACTTTGACATGACC
ATGCGTCGCCTTACCCGAGTGCGCTTCGTGCGAGCCCCGCTTCCGGAGCT
CGTGTTTGCTGACGCCCGCGAGTCTTTCATGGCTAAATATCCGCTCAAAG
ACCCGGATGGGTACCAAGCCAATATGGACAACTCGCCCGCGTACATTGCC
GAGATTCAGCGCAGCATTCATGAGCTTGGCGAAAAGATTCATTCTCCATA
CCATTGTTCACCGGGCGGCATTTCATATGACGATATCATTTTGTTTCCGC
GTCTTCGAAACTTGACCATTGTTAAGGGTCTTGAGCTTCCGCCTAAGATT
CGCGACTATGTCGAATATCAAGCAACGGCAGCCGACGTTCCGCTGTATGA
CAATTGCGCAATTTGA
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protein sequence of Ggra10295.t1

>Ggra10295.t1 ID=Ggra10295.t1|Name=Ggra10295.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=272bp
MAFIPPTPLNRHPAVSVSNPSTASPRPVTHFVMTTPPVRPARVVPNPLPN
LLVYDHCPFCVRVRHLLGLKNVKYNLIWLASDDVHTPTSLVGRKIVPIFQ
PQGAHGSSQDESLDICAAIDSDARYGPPGLLKPASGAKHFAQWIEDFDMT
MRRLTRVRFVRAPLPELVFADARESFMAKYPLKDPDGYQANMDNSPAYIA
EIQRSIHELGEKIHSPYHCSPGGISYDDIILFPRLRNLTIVKGLELPPKI
RDYVEYQATAADVPLYDNCAI*
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mRNA from alignment at tig00000016_pilon:409266..410081-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10295.t1 ID=Ggra10295.t1|Name=Ggra10295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000016_pilon:409266..410081- (Gracilaria gracilis GNS1m male)
ATGGCCTTCATCCCCCCGACTCCCCTCAATCGTCACCCCGCCGTCTCCGT
CTCCAACCCTTCTACCGCGTCCCCGCGACCCGTGACACATTTTGTCATGA
CGACGCCGCCCGTGCGGCCGGCTCGCGTCGTCCCCAACCCGTTGCCCAAC
CTGCTGGTATACGATCACTGCCCGTTCTGTGTGCGAGTGCGCCACCTTCT
AGGGCTCAAGAACGTCAAGTATAACCTCATTTGGCTGGCCAGCGACGACG
TCCACACCCCCACATCATTGGTAGGCCGCAAGATCGTGCCCATCTTCCAG
CCGCAAGGCGCCCACGGTTCATCGCAAGATGAGAGCCTGGACATCTGTGC
CGCCATCGATTCGGATGCTCGCTACGGGCCGCCCGGCTTGCTCAAACCAG
CATCTGGTGCCAAGCATTTTGCTCAGTGGATTGAGGACTTTGACATGACC
ATGCGTCGCCTTACCCGAGTGCGCTTCGTGCGAGCCCCGCTTCCGGAGCT
CGTGTTTGCTGACGCCCGCGAGTCTTTCATGGCTAAATATCCGCTCAAAG
ACCCGGATGGGTACCAAGCCAATATGGACAACTCGCCCGCGTACATTGCC
GAGATTCAGCGCAGCATTCATGAGCTTGGCGAAAAGATTCATTCTCCATA
CCATTGTTCACCGGGCGGCATTTCATATGACGATATCATTTTGTTTCCGC
GTCTTCGAAACTTGACCATTGTTAAGGGTCTTGAGCTTCCGCCTAAGATT
CGCGACTATGTCGAATATCAAGCAACGGCAGCCGACGTTCCGCTGTATGA
CAATTGCGCAATTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:409266..410081-

>Ggra10295.t1 ID=Ggra10295.t1|Name=Ggra10295.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=816bp|location=Sequence derived from alignment at tig00000016_pilon:409266..410081- (Gracilaria gracilis GNS1m male)
ATGGCCTTCATCCCCCCGACTCCCCTCAATCGTCACCCCGCCGTCTCCGT
CTCCAACCCTTCTACCGCGTCCCCGCGACCCGTGACACATTTTGTCATGA
CGACGCCGCCCGTGCGGCCGGCTCGCGTCGTCCCCAACCCGTTGCCCAAC
CTGCTGGTATACGATCACTGCCCGTTCTGTGTGCGAGTGCGCCACCTTCT
AGGGCTCAAGAACGTCAAGTATAACCTCATTTGGCTGGCCAGCGACGACG
TCCACACCCCCACATCATTGGTAGGCCGCAAGATCGTGCCCATCTTCCAG
CCGCAAGGCGCCCACGGTTCATCGCAAGATGAGAGCCTGGACATCTGTGC
CGCCATCGATTCGGATGCTCGCTACGGGCCGCCCGGCTTGCTCAAACCAG
CATCTGGTGCCAAGCATTTTGCTCAGTGGATTGAGGACTTTGACATGACC
ATGCGTCGCCTTACCCGAGTGCGCTTCGTGCGAGCCCCGCTTCCGGAGCT
CGTGTTTGCTGACGCCCGCGAGTCTTTCATGGCTAAATATCCGCTCAAAG
ACCCGGATGGGTACCAAGCCAATATGGACAACTCGCCCGCGTACATTGCC
GAGATTCAGCGCAGCATTCATGAGCTTGGCGAAAAGATTCATTCTCCATA
CCATTGTTCACCGGGCGGCATTTCATATGACGATATCATTTTGTTTCCGC
GTCTTCGAAACTTGACCATTGTTAAGGGTCTTGAGCTTCCGCCTAAGATT
CGCGACTATGTCGAATATCAAGCAACGGCAGCCGACGTTCCGCTGTATGA
CAATTGCGCAATTTGA
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