Ggra10292.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10292.t1
Unique NameGgra10292.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:401036..401694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10292Ggra10292Gracilaria gracilis GNS1m malegenetig00000016_pilon 401036..401694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10292.t1Ggra10292.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 401036..401694 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10292.t1.start1Ggra10292.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 401036..401038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10292.t1.CDS1Ggra10292.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 401036..401212 +
Ggra10292.t1.CDS2Ggra10292.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 401338..401694 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10292.t1.exon1Ggra10292.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 401036..401212 +
Ggra10292.t1.exon2Ggra10292.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 401338..401694 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10292.t1.intron1Ggra10292.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 401213..401337 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10292.t1.stop1Ggra10292.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 401692..401694 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10292.t1 ID=Ggra10292.t1|Name=Ggra10292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MDDVQQDAAGAPQPPINPNAANARRRRNNRPRVRNQPAPQRDRGDFVWAD
PSPNVDAAPYPELLFRRWFLSAYYIDHNQQDDGVNRVVWRDRSSRQYLLD
RVRSELDELEAENHVVQIDGNDISMRLPHLTFTPASRNLITPSLPGNQRL
RNLVDFGIWLQQPFLEQGEEQVRNGLP*
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spliced messenger RNA

>Ggra10292.t1 ID=Ggra10292.t1|Name=Ggra10292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000016_pilon:401036..401694+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGATGTCCAGCAGGATGCTGCTGGTGCCCCCCAACCCCCTATCAA
CCCGAATGCTGCCAACGCTAGACGTCGCCGCAATAATCGCCCGCGTGTAA
GGAACCAACCGGCTCCTCAACGCGACCGTGGTGATTTCGTTTGGGCTGAT
CCTTCTCCAAATGTTGATGCGGCTCCGTATCCTGAATTGTTATTTAGGAG
ATGGTTTCTTAGTGCATACTATATCGACCATAACCAACAAGACGATGGCG
TTAATAGAGTGGTTTGGAGAGACCGTTCTAGCCGTCAGTATCTATTGGAC
CGTGTGAGGAGCGAATTAGACGAACTGGAAGCGGAGAATCATGTTGTCCA
GATTGATGGAAATGATATTTCGATGCGCCTTCCGCATCTTACATTCACTC
CAGCCTCTCGCAACTTGATTACTCCTTCATTACCTGGAAACCAAAGACTT
CGAAACCTCGTTGATTTTGGTATTTGGCTGCAGCAGCCATTCCTCGAACA
AGGAGAGGAACAGGTTAGAAACGGGCTTCCGTAG
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protein sequence of Ggra10292.t1

>Ggra10292.t1 ID=Ggra10292.t1|Name=Ggra10292.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MDDVQQDAAGAPQPPINPNAANARRRRNNRPRVRNQPAPQRDRGDFVWAD
PSPNVDAAPYPELLFRRWFLSAYYIDHNQQDDGVNRVVWRDRSSRQYLLD
RVRSELDELEAENHVVQIDGNDISMRLPHLTFTPASRNLITPSLPGNQRL
RNLVDFGIWLQQPFLEQGEEQVRNGLP*
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mRNA from alignment at tig00000016_pilon:401036..401694+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10292.t1 ID=Ggra10292.t1|Name=Ggra10292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=659bp|location=Sequence derived from alignment at tig00000016_pilon:401036..401694+ (Gracilaria gracilis GNS1m male)
ATGGATGATGTCCAGCAGGATGCTGCTGGTGCCCCCCAACCCCCTATCAA
CCCGAATGCTGCCAACGCTAGACGTCGCCGCAATAATCGCCCGCGTGTAA
GGAACCAACCGGCTCCTCAACGCGACCGTGGTGATTTCGTTTGGGCTGAT
CCTTCTCCAAATGTTGATGCGGCTCCGGTTCCTATGAAATTGAACCCTTG
AAATGTGTTTTTTACGACACGACTCCCGTTCCGAAATCGCTTATTCCCGG
AATTGATATGATTGGTAACATCACTACTAAACTTGGTGATGTTCGCATTA
AGTATCCTGAATTGTTATTTAGGAGATGGTTTCTTAGTGCATACTATATC
GACCATAACCAACAAGACGATGGCGTTAATAGAGTGGTTTGGAGAGACCG
TTCTAGCCGTCAGTATCTATTGGACCGTGTGAGGAGCGAATTAGACGAAC
TGGAAGCGGAGAATCATGTTGTCCAGATTGATGGAAATGATATTTCGATG
CGCCTTCCGCATCTTACATTCACTCCAGCCTCTCGCAACTTGATTACTCC
TTCATTACCTGGAAACCAAAGACTTCGAAACCTCGTTGATTTTGGTATTT
GGCTGCAGCAGCCATTCCTCGAACAAGGAGAGGAACAGGTTAGAAACGGG
CTTCCGTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:401036..401694+

>Ggra10292.t1 ID=Ggra10292.t1|Name=Ggra10292.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000016_pilon:401036..401694+ (Gracilaria gracilis GNS1m male)
ATGGATGATGTCCAGCAGGATGCTGCTGGTGCCCCCCAACCCCCTATCAA
CCCGAATGCTGCCAACGCTAGACGTCGCCGCAATAATCGCCCGCGTGTAA
GGAACCAACCGGCTCCTCAACGCGACCGTGGTGATTTCGTTTGGGCTGAT
CCTTCTCCAAATGTTGATGCGGCTCCGTATCCTGAATTGTTATTTAGGAG
ATGGTTTCTTAGTGCATACTATATCGACCATAACCAACAAGACGATGGCG
TTAATAGAGTGGTTTGGAGAGACCGTTCTAGCCGTCAGTATCTATTGGAC
CGTGTGAGGAGCGAATTAGACGAACTGGAAGCGGAGAATCATGTTGTCCA
GATTGATGGAAATGATATTTCGATGCGCCTTCCGCATCTTACATTCACTC
CAGCCTCTCGCAACTTGATTACTCCTTCATTACCTGGAAACCAAAGACTT
CGAAACCTCGTTGATTTTGGTATTTGGCTGCAGCAGCCATTCCTCGAACA
AGGAGAGGAACAGGTTAGAAACGGGCTTCCGTAG
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