Ggra1029.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1029.t1
Unique Name	Ggra1029.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	626

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:662708..664585 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1029	Ggra1029	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 662708..664585 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1029.t1.stop1	Ggra1029.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 662708..662710 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1029.t1.CDS1	Ggra1029.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 662708..664585 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1029.t1.exon1	Ggra1029.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 662708..664585 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1029.t1.start1	Ggra1029.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 664583..664585 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1029.t1	Ggra1029.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 662708..664585 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:662708..664585-
coding sequence from alignment at tig00000027_pilon:662708..664585-

mRNA sequence

>Ggra1029.t1 ID=Ggra1029.t1|Name=Ggra1029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=626bp
MASSKGELRKRALALERKVKLENDIDAMIELGRLLIAGCERASQKARGFQ
MLERAVKQAQNPMAMHYLALYFLDHGMTDCYSRAISLLERSIKLQEIPAV
INTLGYCYHAGKGVAKNPQLAGQLFTRALRLEQDPSIMVNLAIHLLETPT
RHPQTKRAVALYEKAIQISSQPRMMTNLGYMYHTGNGSLKRCPKKAAKWY
MRAIREHNYVPSMRRLASLILENDPSGEEVDRAVQLLEYAMEQEQQRHLR
TILMLADTYLEYALDFDRALVLFETAALRFNSHTARSVLVGSWLGHMKAM
RPDHVRIFKFCWEDFRNNRNTGTTVIAGAMLWSGAERIKMDRTNAVWFLH
SQEYSRHGVFSMMLRRDPGSYTGGRKLLRKFDSIIDRSSLNEMEAIVLSE
SHCLEDKALAMESFRAQMNENGGVAWLCLSLRVGSYTLPFDGRLDCITNP
MRRFSLWKYIASLNLASLLLEIEGRQEEAVKILEDLMDGDLKLLAVLNLA
YLLMGDIEGVKQDRERAMLLLEDAVNDTNDVSARAMLANALSERPESSVH
AVERGWELWKSVEKEVKDEVELRKVARLVSATSEERWKVLSCEREEEIIE
TYSSSGAGEESVHSVSESRSAKELL*

spliced messenger RNA

>Ggra1029.t1 ID=Ggra1029.t1|Name=Ggra1029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1878bp|location=Sequence derived from alignment at tig00000027_pilon:662708..664585- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCAGCAAAGGAGAACTGCGCAAGAGAGCTCTAGCTTTGGAGAG
AAAGGTTAAACTTGAAAACGATATCGACGCCATGATCGAGTTGGGTCGTT
TGTTGATCGCGGGTTGCGAACGTGCCTCACAGAAAGCGAGAGGCTTTCAG
ATGTTAGAACGTGCCGTGAAACAGGCCCAAAATCCGATGGCCATGCACTA
CCTGGCGCTTTATTTTCTGGATCATGGTATGACCGATTGTTACTCTCGCG
CCATTTCACTTCTCGAGCGCTCGATAAAACTGCAGGAGATTCCGGCTGTG
ATCAATACGTTGGGCTATTGCTATCACGCTGGCAAAGGAGTGGCGAAGAA
TCCTCAGCTTGCTGGACAACTGTTCACTCGAGCGTTGCGACTCGAGCAAG
ACCCTTCGATCATGGTAAATCTAGCAATTCACTTACTCGAAACCCCAACG
CGGCACCCACAGACGAAGCGTGCCGTCGCATTGTACGAAAAGGCCATTCA
GATTTCATCTCAGCCAAGGATGATGACCAACTTGGGATATATGTATCACA
CTGGAAATGGAAGCCTTAAAAGATGCCCGAAGAAAGCTGCAAAGTGGTAT
ATGCGCGCCATTCGAGAGCACAACTATGTGCCGTCAATGCGCAGGTTGGC
CAGCCTGATTCTGGAAAATGACCCAAGTGGCGAAGAAGTCGACCGAGCTG
TTCAGTTGCTAGAGTATGCAATGGAACAAGAACAACAGCGACATTTACGT
ACAATTTTGATGCTAGCAGATACGTATTTGGAGTATGCTCTTGATTTCGA
CCGCGCGCTCGTACTCTTCGAAACAGCTGCACTTCGTTTTAACTCCCATA
CAGCAAGGTCCGTGCTTGTTGGCTCTTGGCTTGGGCATATGAAAGCGATG
CGTCCTGATCATGTGCGTATATTCAAATTCTGTTGGGAGGATTTTCGGAA
TAACCGCAATACTGGTACAACTGTCATTGCAGGAGCTATGCTCTGGAGTG
GAGCAGAACGTATCAAAATGGATAGGACGAACGCCGTTTGGTTTTTGCAT
TCACAAGAATACTCTCGGCATGGCGTTTTCTCGATGATGTTGAGACGTGA
TCCGGGTTCTTATACAGGTGGGAGAAAGCTGTTGAGGAAGTTTGACAGCA
TCATAGATCGATCTAGTCTGAACGAAATGGAGGCAATAGTACTCAGTGAA
AGCCATTGTTTGGAAGATAAGGCGTTAGCAATGGAGAGTTTTCGGGCTCA
AATGAACGAAAACGGTGGCGTTGCTTGGCTATGTCTAAGTCTGCGAGTAG
GGAGCTACACGTTGCCTTTTGACGGACGTCTGGACTGCATCACGAACCCG
ATGAGAAGATTTTCGCTGTGGAAATACATCGCGTCTCTAAATCTGGCAAG
TCTTCTGCTGGAGATTGAGGGAAGGCAAGAAGAGGCTGTGAAGATACTAG
AAGATTTGATGGACGGGGACTTGAAATTGCTCGCTGTGCTGAACCTGGCG
TATCTTCTAATGGGCGACATTGAAGGAGTGAAACAGGATCGGGAAAGGGC
AATGCTGCTTCTGGAAGACGCCGTGAATGATACGAACGACGTTTCCGCTC
GTGCAATGTTGGCTAACGCGTTATCAGAACGACCGGAATCGAGTGTTCAC
GCCGTAGAAAGGGGATGGGAACTGTGGAAAAGCGTAGAAAAAGAGGTGAA
GGATGAGGTAGAGCTACGAAAAGTTGCACGGTTGGTGTCGGCGACCAGCG
AGGAGAGATGGAAGGTACTTTCATGTGAGCGGGAAGAGGAGATCATCGAG
ACTTACTCATCGAGTGGCGCTGGAGAAGAAAGCGTGCATTCGGTATCAGA
GTCTCGCTCTGCGAAGGAGTTGCTCTGA

protein sequence of Ggra1029.t1

>Ggra1029.t1 ID=Ggra1029.t1|Name=Ggra1029.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=626bp
MASSKGELRKRALALERKVKLENDIDAMIELGRLLIAGCERASQKARGFQ
MLERAVKQAQNPMAMHYLALYFLDHGMTDCYSRAISLLERSIKLQEIPAV
INTLGYCYHAGKGVAKNPQLAGQLFTRALRLEQDPSIMVNLAIHLLETPT
RHPQTKRAVALYEKAIQISSQPRMMTNLGYMYHTGNGSLKRCPKKAAKWY
MRAIREHNYVPSMRRLASLILENDPSGEEVDRAVQLLEYAMEQEQQRHLR
TILMLADTYLEYALDFDRALVLFETAALRFNSHTARSVLVGSWLGHMKAM
RPDHVRIFKFCWEDFRNNRNTGTTVIAGAMLWSGAERIKMDRTNAVWFLH
SQEYSRHGVFSMMLRRDPGSYTGGRKLLRKFDSIIDRSSLNEMEAIVLSE
SHCLEDKALAMESFRAQMNENGGVAWLCLSLRVGSYTLPFDGRLDCITNP
MRRFSLWKYIASLNLASLLLEIEGRQEEAVKILEDLMDGDLKLLAVLNLA
YLLMGDIEGVKQDRERAMLLLEDAVNDTNDVSARAMLANALSERPESSVH
AVERGWELWKSVEKEVKDEVELRKVARLVSATSEERWKVLSCEREEEIIE
TYSSSGAGEESVHSVSESRSAKELL*

mRNA from alignment at tig00000027_pilon:662708..664585-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1029.t1 ID=Ggra1029.t1|Name=Ggra1029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1878bp|location=Sequence derived from alignment at tig00000027_pilon:662708..664585- (Gracilaria gracilis GNS1m male)
ATGGCTTCCAGCAAAGGAGAACTGCGCAAGAGAGCTCTAGCTTTGGAGAG
AAAGGTTAAACTTGAAAACGATATCGACGCCATGATCGAGTTGGGTCGTT
TGTTGATCGCGGGTTGCGAACGTGCCTCACAGAAAGCGAGAGGCTTTCAG
ATGTTAGAACGTGCCGTGAAACAGGCCCAAAATCCGATGGCCATGCACTA
CCTGGCGCTTTATTTTCTGGATCATGGTATGACCGATTGTTACTCTCGCG
CCATTTCACTTCTCGAGCGCTCGATAAAACTGCAGGAGATTCCGGCTGTG
ATCAATACGTTGGGCTATTGCTATCACGCTGGCAAAGGAGTGGCGAAGAA
TCCTCAGCTTGCTGGACAACTGTTCACTCGAGCGTTGCGACTCGAGCAAG
ACCCTTCGATCATGGTAAATCTAGCAATTCACTTACTCGAAACCCCAACG
CGGCACCCACAGACGAAGCGTGCCGTCGCATTGTACGAAAAGGCCATTCA
GATTTCATCTCAGCCAAGGATGATGACCAACTTGGGATATATGTATCACA
CTGGAAATGGAAGCCTTAAAAGATGCCCGAAGAAAGCTGCAAAGTGGTAT
ATGCGCGCCATTCGAGAGCACAACTATGTGCCGTCAATGCGCAGGTTGGC
CAGCCTGATTCTGGAAAATGACCCAAGTGGCGAAGAAGTCGACCGAGCTG
TTCAGTTGCTAGAGTATGCAATGGAACAAGAACAACAGCGACATTTACGT
ACAATTTTGATGCTAGCAGATACGTATTTGGAGTATGCTCTTGATTTCGA
CCGCGCGCTCGTACTCTTCGAAACAGCTGCACTTCGTTTTAACTCCCATA
CAGCAAGGTCCGTGCTTGTTGGCTCTTGGCTTGGGCATATGAAAGCGATG
CGTCCTGATCATGTGCGTATATTCAAATTCTGTTGGGAGGATTTTCGGAA
TAACCGCAATACTGGTACAACTGTCATTGCAGGAGCTATGCTCTGGAGTG
GAGCAGAACGTATCAAAATGGATAGGACGAACGCCGTTTGGTTTTTGCAT
TCACAAGAATACTCTCGGCATGGCGTTTTCTCGATGATGTTGAGACGTGA
TCCGGGTTCTTATACAGGTGGGAGAAAGCTGTTGAGGAAGTTTGACAGCA
TCATAGATCGATCTAGTCTGAACGAAATGGAGGCAATAGTACTCAGTGAA
AGCCATTGTTTGGAAGATAAGGCGTTAGCAATGGAGAGTTTTCGGGCTCA
AATGAACGAAAACGGTGGCGTTGCTTGGCTATGTCTAAGTCTGCGAGTAG
GGAGCTACACGTTGCCTTTTGACGGACGTCTGGACTGCATCACGAACCCG
ATGAGAAGATTTTCGCTGTGGAAATACATCGCGTCTCTAAATCTGGCAAG
TCTTCTGCTGGAGATTGAGGGAAGGCAAGAAGAGGCTGTGAAGATACTAG
AAGATTTGATGGACGGGGACTTGAAATTGCTCGCTGTGCTGAACCTGGCG
TATCTTCTAATGGGCGACATTGAAGGAGTGAAACAGGATCGGGAAAGGGC
AATGCTGCTTCTGGAAGACGCCGTGAATGATACGAACGACGTTTCCGCTC
GTGCAATGTTGGCTAACGCGTTATCAGAACGACCGGAATCGAGTGTTCAC
GCCGTAGAAAGGGGATGGGAACTGTGGAAAAGCGTAGAAAAAGAGGTGAA
GGATGAGGTAGAGCTACGAAAAGTTGCACGGTTGGTGTCGGCGACCAGCG
AGGAGAGATGGAAGGTACTTTCATGTGAGCGGGAAGAGGAGATCATCGAG
ACTTACTCATCGAGTGGCGCTGGAGAAGAAAGCGTGCATTCGGTATCAGA
GTCTCGCTCTGCGAAGGAGTTGCTCTGA

Coding sequence (CDS) from alignment at tig00000027_pilon:662708..664585-

>Ggra1029.t1 ID=Ggra1029.t1|Name=Ggra1029.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1878bp|location=Sequence derived from alignment at tig00000027_pilon:662708..664585- (Gracilaria gracilis GNS1m male)
ATGGCTTCCAGCAAAGGAGAACTGCGCAAGAGAGCTCTAGCTTTGGAGAG
AAAGGTTAAACTTGAAAACGATATCGACGCCATGATCGAGTTGGGTCGTT
TGTTGATCGCGGGTTGCGAACGTGCCTCACAGAAAGCGAGAGGCTTTCAG
ATGTTAGAACGTGCCGTGAAACAGGCCCAAAATCCGATGGCCATGCACTA
CCTGGCGCTTTATTTTCTGGATCATGGTATGACCGATTGTTACTCTCGCG
CCATTTCACTTCTCGAGCGCTCGATAAAACTGCAGGAGATTCCGGCTGTG
ATCAATACGTTGGGCTATTGCTATCACGCTGGCAAAGGAGTGGCGAAGAA
TCCTCAGCTTGCTGGACAACTGTTCACTCGAGCGTTGCGACTCGAGCAAG
ACCCTTCGATCATGGTAAATCTAGCAATTCACTTACTCGAAACCCCAACG
CGGCACCCACAGACGAAGCGTGCCGTCGCATTGTACGAAAAGGCCATTCA
GATTTCATCTCAGCCAAGGATGATGACCAACTTGGGATATATGTATCACA
CTGGAAATGGAAGCCTTAAAAGATGCCCGAAGAAAGCTGCAAAGTGGTAT
ATGCGCGCCATTCGAGAGCACAACTATGTGCCGTCAATGCGCAGGTTGGC
CAGCCTGATTCTGGAAAATGACCCAAGTGGCGAAGAAGTCGACCGAGCTG
TTCAGTTGCTAGAGTATGCAATGGAACAAGAACAACAGCGACATTTACGT
ACAATTTTGATGCTAGCAGATACGTATTTGGAGTATGCTCTTGATTTCGA
CCGCGCGCTCGTACTCTTCGAAACAGCTGCACTTCGTTTTAACTCCCATA
CAGCAAGGTCCGTGCTTGTTGGCTCTTGGCTTGGGCATATGAAAGCGATG
CGTCCTGATCATGTGCGTATATTCAAATTCTGTTGGGAGGATTTTCGGAA
TAACCGCAATACTGGTACAACTGTCATTGCAGGAGCTATGCTCTGGAGTG
GAGCAGAACGTATCAAAATGGATAGGACGAACGCCGTTTGGTTTTTGCAT
TCACAAGAATACTCTCGGCATGGCGTTTTCTCGATGATGTTGAGACGTGA
TCCGGGTTCTTATACAGGTGGGAGAAAGCTGTTGAGGAAGTTTGACAGCA
TCATAGATCGATCTAGTCTGAACGAAATGGAGGCAATAGTACTCAGTGAA
AGCCATTGTTTGGAAGATAAGGCGTTAGCAATGGAGAGTTTTCGGGCTCA
AATGAACGAAAACGGTGGCGTTGCTTGGCTATGTCTAAGTCTGCGAGTAG
GGAGCTACACGTTGCCTTTTGACGGACGTCTGGACTGCATCACGAACCCG
ATGAGAAGATTTTCGCTGTGGAAATACATCGCGTCTCTAAATCTGGCAAG
TCTTCTGCTGGAGATTGAGGGAAGGCAAGAAGAGGCTGTGAAGATACTAG
AAGATTTGATGGACGGGGACTTGAAATTGCTCGCTGTGCTGAACCTGGCG
TATCTTCTAATGGGCGACATTGAAGGAGTGAAACAGGATCGGGAAAGGGC
AATGCTGCTTCTGGAAGACGCCGTGAATGATACGAACGACGTTTCCGCTC
GTGCAATGTTGGCTAACGCGTTATCAGAACGACCGGAATCGAGTGTTCAC
GCCGTAGAAAGGGGATGGGAACTGTGGAAAAGCGTAGAAAAAGAGGTGAA
GGATGAGGTAGAGCTACGAAAAGTTGCACGGTTGGTGTCGGCGACCAGCG
AGGAGAGATGGAAGGTACTTTCATGTGAGCGGGAAGAGGAGATCATCGAG
ACTTACTCATCGAGTGGCGCTGGAGAAGAAAGCGTGCATTCGGTATCAGA
GTCTCGCTCTGCGAAGGAGTTGCTCTGA