Ggra10279.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10279.t1
Unique NameGgra10279.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:360623..361411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX88456
Preferred nameMETTL1
PFAMsMethyltransf_4
Max annot lvl33208|Metazoa
KEGG koko:K03439
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234
Evalue3.21e-70
EggNOG OGsCOG0220@1|root,KOG3115@2759|Eukaryota,38EJS@33154|Opisthokonta,3BGW2@33208|Metazoa,3CZXB@33213|Bilateria,41WQM@6656|Arthropoda
EC2.1.1.33
DescriptionCatalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10279Ggra10279Gracilaria gracilis GNS1m malegenetig00000016_pilon 360623..361411 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10279.t1.start1Ggra10279.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 360623..360625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10279.t1.CDS1Ggra10279.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 360623..361411 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10279.t1.exon1Ggra10279.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 360623..361411 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10279.t1.stop1Ggra10279.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 361409..361411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10279.t1Ggra10279.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 360623..361411 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10279.t1 ID=Ggra10279.t1|Name=Ggra10279.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=263bp
MPTTVQETTTTNMLHPSTSAATGGPDDEARVRWMISKRDFRARAHSNPLN
DGLFEPPLTPSDLQMDKLFANPLSSKVDWCDIGCGYGGLLASLSTAFPHK
LMLGLEIRDRVAQFCRQRVREMRQQYPGSYGNVAFERTNAMKFLPNYFAK
ASLEKLFFCYPDPHFKRKKNRQRIISAQLLAEYAYVLEENTGVAYVVTDV
PELFEWMVSHFEAHPLFERRSQQEHSQDAVSRYVRDMTDEAQRVEKSDRN
KQDASFRRLPNP*
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spliced messenger RNA

>Ggra10279.t1 ID=Ggra10279.t1|Name=Ggra10279.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000016_pilon:360623..361411+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACGACGGTTCAGGAAACCACGACGACAAACATGCTGCATCCATC
AACATCAGCTGCGACTGGCGGACCGGATGATGAAGCACGCGTGCGATGGA
TGATCAGCAAGCGCGATTTTCGAGCCCGTGCTCATTCCAATCCTTTGAAC
GATGGCCTGTTCGAGCCGCCGCTCACCCCGTCCGACTTGCAAATGGACAA
GCTGTTCGCCAACCCTCTGTCTTCGAAGGTGGATTGGTGCGACATAGGAT
GTGGATACGGTGGTTTGCTCGCCAGTCTCAGCACCGCCTTCCCACACAAG
CTCATGCTTGGCCTGGAAATTCGAGATCGGGTGGCACAGTTTTGTCGCCA
ACGAGTGCGCGAAATGCGCCAGCAATACCCGGGCAGCTACGGGAATGTGG
CCTTTGAAAGAACCAATGCCATGAAGTTTCTTCCCAACTACTTTGCGAAA
GCAAGTTTGGAAAAGCTTTTCTTCTGTTACCCAGACCCTCACTTCAAGCG
CAAGAAAAACCGCCAACGAATCATTTCTGCACAGCTGCTGGCGGAGTACG
CATACGTGCTGGAGGAGAATACAGGCGTGGCCTATGTGGTAACTGACGTC
CCGGAGCTTTTTGAATGGATGGTGTCCCACTTTGAAGCACATCCGCTGTT
CGAAAGACGTTCTCAACAAGAGCATTCTCAGGATGCTGTGTCTCGATACG
TGCGTGATATGACCGATGAGGCTCAGCGAGTGGAGAAAAGCGATCGAAAC
AAGCAAGACGCCTCATTTCGTCGATTGCCAAACCCATAG
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protein sequence of Ggra10279.t1

>Ggra10279.t1 ID=Ggra10279.t1|Name=Ggra10279.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=263bp
MPTTVQETTTTNMLHPSTSAATGGPDDEARVRWMISKRDFRARAHSNPLN
DGLFEPPLTPSDLQMDKLFANPLSSKVDWCDIGCGYGGLLASLSTAFPHK
LMLGLEIRDRVAQFCRQRVREMRQQYPGSYGNVAFERTNAMKFLPNYFAK
ASLEKLFFCYPDPHFKRKKNRQRIISAQLLAEYAYVLEENTGVAYVVTDV
PELFEWMVSHFEAHPLFERRSQQEHSQDAVSRYVRDMTDEAQRVEKSDRN
KQDASFRRLPNP*
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mRNA from alignment at tig00000016_pilon:360623..361411+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10279.t1 ID=Ggra10279.t1|Name=Ggra10279.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000016_pilon:360623..361411+ (Gracilaria gracilis GNS1m male)
ATGCCGACGACGGTTCAGGAAACCACGACGACAAACATGCTGCATCCATC
AACATCAGCTGCGACTGGCGGACCGGATGATGAAGCACGCGTGCGATGGA
TGATCAGCAAGCGCGATTTTCGAGCCCGTGCTCATTCCAATCCTTTGAAC
GATGGCCTGTTCGAGCCGCCGCTCACCCCGTCCGACTTGCAAATGGACAA
GCTGTTCGCCAACCCTCTGTCTTCGAAGGTGGATTGGTGCGACATAGGAT
GTGGATACGGTGGTTTGCTCGCCAGTCTCAGCACCGCCTTCCCACACAAG
CTCATGCTTGGCCTGGAAATTCGAGATCGGGTGGCACAGTTTTGTCGCCA
ACGAGTGCGCGAAATGCGCCAGCAATACCCGGGCAGCTACGGGAATGTGG
CCTTTGAAAGAACCAATGCCATGAAGTTTCTTCCCAACTACTTTGCGAAA
GCAAGTTTGGAAAAGCTTTTCTTCTGTTACCCAGACCCTCACTTCAAGCG
CAAGAAAAACCGCCAACGAATCATTTCTGCACAGCTGCTGGCGGAGTACG
CATACGTGCTGGAGGAGAATACAGGCGTGGCCTATGTGGTAACTGACGTC
CCGGAGCTTTTTGAATGGATGGTGTCCCACTTTGAAGCACATCCGCTGTT
CGAAAGACGTTCTCAACAAGAGCATTCTCAGGATGCTGTGTCTCGATACG
TGCGTGATATGACCGATGAGGCTCAGCGAGTGGAGAAAAGCGATCGAAAC
AAGCAAGACGCCTCATTTCGTCGATTGCCAAACCCATAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:360623..361411+

>Ggra10279.t1 ID=Ggra10279.t1|Name=Ggra10279.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00000016_pilon:360623..361411+ (Gracilaria gracilis GNS1m male)
ATGCCGACGACGGTTCAGGAAACCACGACGACAAACATGCTGCATCCATC
AACATCAGCTGCGACTGGCGGACCGGATGATGAAGCACGCGTGCGATGGA
TGATCAGCAAGCGCGATTTTCGAGCCCGTGCTCATTCCAATCCTTTGAAC
GATGGCCTGTTCGAGCCGCCGCTCACCCCGTCCGACTTGCAAATGGACAA
GCTGTTCGCCAACCCTCTGTCTTCGAAGGTGGATTGGTGCGACATAGGAT
GTGGATACGGTGGTTTGCTCGCCAGTCTCAGCACCGCCTTCCCACACAAG
CTCATGCTTGGCCTGGAAATTCGAGATCGGGTGGCACAGTTTTGTCGCCA
ACGAGTGCGCGAAATGCGCCAGCAATACCCGGGCAGCTACGGGAATGTGG
CCTTTGAAAGAACCAATGCCATGAAGTTTCTTCCCAACTACTTTGCGAAA
GCAAGTTTGGAAAAGCTTTTCTTCTGTTACCCAGACCCTCACTTCAAGCG
CAAGAAAAACCGCCAACGAATCATTTCTGCACAGCTGCTGGCGGAGTACG
CATACGTGCTGGAGGAGAATACAGGCGTGGCCTATGTGGTAACTGACGTC
CCGGAGCTTTTTGAATGGATGGTGTCCCACTTTGAAGCACATCCGCTGTT
CGAAAGACGTTCTCAACAAGAGCATTCTCAGGATGCTGTGTCTCGATACG
TGCGTGATATGACCGATGAGGCTCAGCGAGTGGAGAAAAGCGATCGAAAC
AAGCAAGACGCCTCATTTCGTCGATTGCCAAACCCATAG
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