Ggra1026.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1026.t1
Unique NameGgra1026.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:628564..628947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1297742.A176_05712
Max annot lvl2|Bacteria
Evalue2.38e-16
EggNOG OGs2EUPR@1|root,33N5I@2|Bacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1026Ggra1026Gracilaria gracilis GNS1m malegenetig00000027_pilon 628564..628947 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1026.t1.start1Ggra1026.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 628564..628566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1026.t1.CDS1Ggra1026.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 628564..628947 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1026.t1.exon1Ggra1026.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 628564..628947 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1026.t1.stop1Ggra1026.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 628945..628947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1026.t1Ggra1026.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 628564..628947 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1026.t1 ID=Ggra1026.t1|Name=Ggra1026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=128bp
MGIPQHGTYTSDDGVHKITIRRANHGNGQIDGDYFAASSPVGELSVPDMK
GGFMWVNNKKLGRDGVAPFAIHFMAKARPDGRPYAIMDGWSGGYQEDDSL
LLTGTRAFVSENGVVQSITLGTKVFSR*
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spliced messenger RNA

>Ggra1026.t1 ID=Ggra1026.t1|Name=Ggra1026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=384bp|location=Sequence derived from alignment at tig00000027_pilon:628564..628947+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATTCCTCAGCACGGTACGTACACTTCGGACGACGGTGTGCACAA
AATAACCATTCGAAGGGCCAACCATGGAAATGGTCAAATCGACGGCGATT
ACTTTGCTGCATCGAGCCCGGTTGGAGAGCTGTCCGTTCCCGATATGAAG
GGCGGCTTCATGTGGGTGAACAACAAAAAGCTGGGAAGGGATGGAGTGGC
ACCGTTTGCAATCCACTTTATGGCCAAAGCGCGCCCGGACGGACGCCCGT
ACGCGATAATGGACGGCTGGAGCGGTGGATATCAGGAAGATGACAGTTTG
CTTTTGACTGGAACGCGTGCCTTTGTGTCGGAAAATGGGGTGGTGCAGAG
CATTACGCTGGGCACCAAGGTGTTCTCCAGGTAA
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protein sequence of Ggra1026.t1

>Ggra1026.t1 ID=Ggra1026.t1|Name=Ggra1026.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=128bp
MGIPQHGTYTSDDGVHKITIRRANHGNGQIDGDYFAASSPVGELSVPDMK
GGFMWVNNKKLGRDGVAPFAIHFMAKARPDGRPYAIMDGWSGGYQEDDSL
LLTGTRAFVSENGVVQSITLGTKVFSR*
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mRNA from alignment at tig00000027_pilon:628564..628947+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1026.t1 ID=Ggra1026.t1|Name=Ggra1026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=384bp|location=Sequence derived from alignment at tig00000027_pilon:628564..628947+ (Gracilaria gracilis GNS1m male)
ATGGGCATTCCTCAGCACGGTACGTACACTTCGGACGACGGTGTGCACAA
AATAACCATTCGAAGGGCCAACCATGGAAATGGTCAAATCGACGGCGATT
ACTTTGCTGCATCGAGCCCGGTTGGAGAGCTGTCCGTTCCCGATATGAAG
GGCGGCTTCATGTGGGTGAACAACAAAAAGCTGGGAAGGGATGGAGTGGC
ACCGTTTGCAATCCACTTTATGGCCAAAGCGCGCCCGGACGGACGCCCGT
ACGCGATAATGGACGGCTGGAGCGGTGGATATCAGGAAGATGACAGTTTG
CTTTTGACTGGAACGCGTGCCTTTGTGTCGGAAAATGGGGTGGTGCAGAG
CATTACGCTGGGCACCAAGGTGTTCTCCAGGTAA
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Coding sequence (CDS) from alignment at tig00000027_pilon:628564..628947+

>Ggra1026.t1 ID=Ggra1026.t1|Name=Ggra1026.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=384bp|location=Sequence derived from alignment at tig00000027_pilon:628564..628947+ (Gracilaria gracilis GNS1m male)
ATGGGCATTCCTCAGCACGGTACGTACACTTCGGACGACGGTGTGCACAA
AATAACCATTCGAAGGGCCAACCATGGAAATGGTCAAATCGACGGCGATT
ACTTTGCTGCATCGAGCCCGGTTGGAGAGCTGTCCGTTCCCGATATGAAG
GGCGGCTTCATGTGGGTGAACAACAAAAAGCTGGGAAGGGATGGAGTGGC
ACCGTTTGCAATCCACTTTATGGCCAAAGCGCGCCCGGACGGACGCCCGT
ACGCGATAATGGACGGCTGGAGCGGTGGATATCAGGAAGATGACAGTTTG
CTTTTGACTGGAACGCGTGCCTTTGTGTCGGAAAATGGGGTGGTGCAGAG
CATTACGCTGGGCACCAAGGTGTTCTCCAGGTAA
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