Ggra10209.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10209.t1
Unique NameGgra10209.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length69
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:94603..95897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10209Ggra10209Gracilaria gracilis GNS1m malegenetig00000016_pilon 94603..95897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10209.t1Ggra10209.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 94603..95897 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10209.t1.start1Ggra10209.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 94603..94605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10209.t1.CDS1Ggra10209.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 94603..94695 +
Ggra10209.t1.CDS2Ggra10209.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 95579..95595 +
Ggra10209.t1.CDS3Ggra10209.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 95690..95754 +
Ggra10209.t1.CDS4Ggra10209.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000016_pilon 95866..95897 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10209.t1.exon1Ggra10209.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 94603..94695 +
Ggra10209.t1.exon2Ggra10209.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 95579..95595 +
Ggra10209.t1.exon3Ggra10209.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 95690..95754 +
Ggra10209.t1.exon4Ggra10209.t1.exon4Gracilaria gracilis GNS1m maleexontig00000016_pilon 95866..95897 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10209.t1.intron1Ggra10209.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 94696..95578 +
Ggra10209.t1.intron2Ggra10209.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 95596..95689 +
Ggra10209.t1.intron3Ggra10209.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000016_pilon 95755..95865 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10209.t1.stop1Ggra10209.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 95895..95897 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10209.t1 ID=Ggra10209.t1|Name=Ggra10209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=69bp
MYTDVSWNRGDGIIRKPPGALDKQNFIQPALLSRFHSFIICELFVHIDSS
GGYYFFTNDSEMVHPHSR*
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spliced messenger RNA

>Ggra10209.t1 ID=Ggra10209.t1|Name=Ggra10209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=207bp|location=Sequence derived from alignment at tig00000016_pilon:94603..95897+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATACGGATGTTAGTTGGAACAGAGGTGATGGTATTATTCGCAAGCC
TCCTGGAGCATTAGATAAGCAGAACTTCATTCAACCTGCGTTGCTCTCCC
GTTTTCATTCTTTTATTATTTGCGAACTTTTTGTCCATATCGATAGTTCT
GGAGGATACTACTTTTTCACGAATGACTCTGAGATGGTGCATCCTCATTC
GCGCTGA
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protein sequence of Ggra10209.t1

>Ggra10209.t1 ID=Ggra10209.t1|Name=Ggra10209.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=69bp
MYTDVSWNRGDGIIRKPPGALDKQNFIQPALLSRFHSFIICELFVHIDSS
GGYYFFTNDSEMVHPHSR*
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mRNA from alignment at tig00000016_pilon:94603..95897+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10209.t1 ID=Ggra10209.t1|Name=Ggra10209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1295bp|location=Sequence derived from alignment at tig00000016_pilon:94603..95897+ (Gracilaria gracilis GNS1m male)
ATGTATACGGATGTTAGTTGGAACAGAGGTGATGGTATTATTCGCAAGCC
TCCTGGAGCATTAGATAAGCAGAACTTCATTCAACCTGCGTTGGTGTGGG
TTTCAGTGCATGCTGCACTGTCTAACCTTATGTGCTCCAGGTTTCCTCTA
TAAGGACACTGACGTGCCGAAAGCAAAGCAGGGTAAAGGTTTAACATATC
GGGCCAGACATGAAAAGGGATAATCACACGAGGCTGCTCTTTAAACCGGC
TACGAGATGTAACGCTGATTGTCGTAAACGGTAGTTCTACAGTACTGTTC
AATCCTTAACAGTAGCCATGAGTGAAGATGGTTCAACAAGGAAAAATGTA
AGCGCCTGCACTGAGAGACAAACGTTGTCAACGCATTTGATCTACCCTCA
ATTGTTCGACTTTGAACACTCCAGTGGTGCAGAGAAGCGGACTGCCTGCA
GAGACATATCCCGTGATCTATAAACGACGGGGTTAACGAATTTTTCAGCT
CAAAGTTCAATACAATTGCGCTAACCTGTCACAACGGGCATAATGGACTG
TTTTATACAGCTCTTCATCTCTCACCAACAAAAGCAGTGCTTAGTCAGCA
AAGAGTTTCTTCCCACCGATAGGCAGGGGGCACAACTTGTAGATTCCGTC
CCTGACCATCGACATCTGAAAAGGAATCCATACTTCAGTTTCAAGGGTAG
GTTGTTGCCTTCCTATAGTTCCAGCAATGTTGAGTGAGTGAGGGCATAGC
CACGAGCCTATGAATGAGAAGGAATAAGTTTTTGCTGTTGCCCAAAGTCG
CCAATCGCCTGCTTTTCCTCCGAACCTGATGATGGCCAAAGTTTTATACG
CAGGAGAATCCATGCATGCATTAAAAGCGCTTTCGAGTCAGGGAGATGTG
AATGGCTGGTGCTTCATCAGTCTCAGTGATGCATTCAACTGAGCATACTC
ATCTTCTCAAACGCTACTTAAGGTAGCTCTCCCGTTTTCATTCGTATGTT
CCACCAACATCTCTCCAGCAGACTGTCGTAAGACTACCGAGGGAAGCGAG
GGGCTCTCCCCTTCATCATGTACTGATACAGTAACAGTTTTATTATTTGC
GAACTTTTTGTCCATATCGATAGTTCTGGAGGATACTACTTTTTCACGAA
TGGTAAGTTCCGATCTTCTGCAATGCATTTCTCGAAAGCGCACACACTGG
CGAACATGTTGTCTGACTGTTTTGTTTAATCTTCACGTCGTGTGCCTTCG
ACTCCGTCCACAGACTCTGAGATGGTGCATCCTCATTCGCGCTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:94603..95897+

>Ggra10209.t1 ID=Ggra10209.t1|Name=Ggra10209.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=207bp|location=Sequence derived from alignment at tig00000016_pilon:94603..95897+ (Gracilaria gracilis GNS1m male)
ATGTATACGGATGTTAGTTGGAACAGAGGTGATGGTATTATTCGCAAGCC
TCCTGGAGCATTAGATAAGCAGAACTTCATTCAACCTGCGTTGCTCTCCC
GTTTTCATTCTTTTATTATTTGCGAACTTTTTGTCCATATCGATAGTTCT
GGAGGATACTACTTTTTCACGAATGACTCTGAGATGGTGCATCCTCATTC
GCGCTGA
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