Ggra10206.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10206.t1
Unique NameGgra10206.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:87715..89262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703280.1
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K15378
KEGG TC2.A.2.4,2.A.2.6
Evalue5.02e-96
EggNOG OGsKOG0637@1|root,KOG0637@2759|Eukaryota
Descriptionsucrose transmembrane transporter activity
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10206Ggra10206Gracilaria gracilis GNS1m malegenetig00000016_pilon 87715..89262 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10206.t1.start1Ggra10206.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 87715..87717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10206.t1.CDS1Ggra10206.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 87715..89262 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10206.t1.exon1Ggra10206.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 87715..89262 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10206.t1.stop1Ggra10206.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 89260..89262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10206.t1Ggra10206.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 87715..89262 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10206.t1 ID=Ggra10206.t1|Name=Ggra10206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp
MDAFQPKSSPSFHDADGEHVDAHAHSPLKAPSKRFTHRQLLSLTSGLVGI
QFCWAVQVGYVTKALLELGLSNRFVSYAWLAGPIAGILVQPTVGVLSDRC
TSRLGRRRPFLIVGTAFTLLCLFTFSYARQIGAWLGDEPKAAVYGNALIV
AVLSFWALDFAINAAQGPLRALLADVVPPEQHKQGNAYFAFATGVGNCAG
SFLGSVPLSSVLRFFPGDLQALYSIAALVLLVTMAVTVTRTNETPLGYEA
VRAAAADDGAHSRYDAVHRVEEVGDGPSGFFHAARTAPYPFVETFTVQCF
MWFGWFALFVFGTSWIGKEVLHGDFHAAEGSELRELYDRGVRLGNLGIGL
QSVLTMVCAPLLPTLMARTSTQTVYLAASVLLGGALSATLLLDKARQAWM
ATLLLASTGFAWAVTMTVPWSLMSEAVSKAAPRDAGVYFTLFNLSQCVPE
VVVSIMSERVEKATGRQAVMLGLGGVAAFGGGALILAMGLGKDRGVAVDD
ETDGLSGALSSGATV*
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spliced messenger RNA

>Ggra10206.t1 ID=Ggra10206.t1|Name=Ggra10206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000016_pilon:87715..89262+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCTTCCAGCCCAAGTCGTCGCCGTCATTCCACGACGCCGATGG
CGAACACGTCGACGCGCACGCACACTCGCCGCTCAAAGCGCCCTCCAAGC
GCTTCACCCACCGTCAGCTGCTGTCGCTCACCAGCGGGCTGGTCGGCATC
CAGTTCTGCTGGGCGGTACAAGTGGGCTACGTCACCAAGGCGCTGCTAGA
ACTCGGTCTCTCCAACCGCTTCGTATCGTACGCCTGGCTGGCCGGACCCA
TCGCCGGCATCCTCGTACAGCCCACCGTGGGCGTACTCTCCGACCGCTGC
ACGTCGCGACTCGGCCGCCGCCGTCCATTCCTCATCGTCGGCACGGCGTT
CACGCTGCTGTGTCTGTTCACCTTTTCGTACGCGCGCCAGATCGGCGCGT
GGCTGGGGGACGAGCCGAAGGCCGCCGTGTATGGCAACGCGCTCATCGTT
GCGGTGCTGTCGTTCTGGGCGCTGGACTTTGCCATCAACGCGGCGCAGGG
GCCGCTGCGCGCGCTGCTGGCGGACGTGGTGCCGCCCGAGCAGCACAAGC
AGGGAAACGCGTACTTTGCGTTCGCCACTGGTGTGGGCAACTGCGCCGGC
AGCTTTCTTGGCAGCGTGCCGTTGAGCAGCGTGCTGCGCTTCTTCCCCGG
CGACTTGCAGGCGCTGTACAGCATTGCGGCGCTGGTGCTGTTGGTGACCA
TGGCCGTCACGGTGACGCGCACCAACGAGACGCCGCTCGGGTACGAGGCG
GTGCGCGCGGCAGCCGCGGACGACGGGGCGCACTCGCGCTACGACGCCGT
GCACCGCGTGGAGGAGGTGGGCGATGGCCCAAGCGGCTTCTTCCACGCAG
CAAGGACGGCACCGTACCCCTTTGTCGAGACGTTCACGGTGCAGTGCTTC
ATGTGGTTCGGCTGGTTTGCGCTGTTCGTGTTCGGCACATCGTGGATCGG
CAAGGAGGTGCTACACGGCGACTTTCACGCGGCGGAGGGCAGCGAGCTGC
GAGAACTGTACGACCGCGGCGTGCGGCTGGGCAACTTGGGCATCGGGCTG
CAGTCTGTGCTAACGATGGTGTGCGCGCCGCTGCTACCGACGCTGATGGC
GCGCACGTCGACGCAGACGGTGTACTTGGCGGCGAGCGTGCTGCTGGGCG
GCGCGCTGTCGGCCACGCTGCTGCTGGACAAGGCGCGGCAGGCGTGGATG
GCTACGTTGCTGCTGGCGAGCACGGGGTTCGCGTGGGCGGTGACGATGAC
GGTGCCGTGGAGCCTGATGAGCGAGGCGGTGTCCAAGGCGGCGCCACGCG
ACGCAGGGGTGTACTTTACGTTGTTCAACCTGTCGCAGTGCGTGCCCGAG
GTAGTGGTGTCCATCATGTCCGAGCGCGTGGAGAAGGCGACGGGACGACA
GGCAGTGATGCTGGGGCTGggcggcgtggcggcgttcggcggcggcgCGC
TGATTTTGGCGATGGGGCTCGGCAAGGACAGAGGCGTGGCAGTTGATGAC
GAAACAGATGGTTTAAGCGGCGCTCTCAGCAGCGGCGCGACCGTGTAG
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protein sequence of Ggra10206.t1

>Ggra10206.t1 ID=Ggra10206.t1|Name=Ggra10206.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=516bp
MDAFQPKSSPSFHDADGEHVDAHAHSPLKAPSKRFTHRQLLSLTSGLVGI
QFCWAVQVGYVTKALLELGLSNRFVSYAWLAGPIAGILVQPTVGVLSDRC
TSRLGRRRPFLIVGTAFTLLCLFTFSYARQIGAWLGDEPKAAVYGNALIV
AVLSFWALDFAINAAQGPLRALLADVVPPEQHKQGNAYFAFATGVGNCAG
SFLGSVPLSSVLRFFPGDLQALYSIAALVLLVTMAVTVTRTNETPLGYEA
VRAAAADDGAHSRYDAVHRVEEVGDGPSGFFHAARTAPYPFVETFTVQCF
MWFGWFALFVFGTSWIGKEVLHGDFHAAEGSELRELYDRGVRLGNLGIGL
QSVLTMVCAPLLPTLMARTSTQTVYLAASVLLGGALSATLLLDKARQAWM
ATLLLASTGFAWAVTMTVPWSLMSEAVSKAAPRDAGVYFTLFNLSQCVPE
VVVSIMSERVEKATGRQAVMLGLGGVAAFGGGALILAMGLGKDRGVAVDD
ETDGLSGALSSGATV*
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mRNA from alignment at tig00000016_pilon:87715..89262+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10206.t1 ID=Ggra10206.t1|Name=Ggra10206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000016_pilon:87715..89262+ (Gracilaria gracilis GNS1m male)
ATGGACGCCTTCCAGCCCAAGTCGTCGCCGTCATTCCACGACGCCGATGG
CGAACACGTCGACGCGCACGCACACTCGCCGCTCAAAGCGCCCTCCAAGC
GCTTCACCCACCGTCAGCTGCTGTCGCTCACCAGCGGGCTGGTCGGCATC
CAGTTCTGCTGGGCGGTACAAGTGGGCTACGTCACCAAGGCGCTGCTAGA
ACTCGGTCTCTCCAACCGCTTCGTATCGTACGCCTGGCTGGCCGGACCCA
TCGCCGGCATCCTCGTACAGCCCACCGTGGGCGTACTCTCCGACCGCTGC
ACGTCGCGACTCGGCCGCCGCCGTCCATTCCTCATCGTCGGCACGGCGTT
CACGCTGCTGTGTCTGTTCACCTTTTCGTACGCGCGCCAGATCGGCGCGT
GGCTGGGGGACGAGCCGAAGGCCGCCGTGTATGGCAACGCGCTCATCGTT
GCGGTGCTGTCGTTCTGGGCGCTGGACTTTGCCATCAACGCGGCGCAGGG
GCCGCTGCGCGCGCTGCTGGCGGACGTGGTGCCGCCCGAGCAGCACAAGC
AGGGAAACGCGTACTTTGCGTTCGCCACTGGTGTGGGCAACTGCGCCGGC
AGCTTTCTTGGCAGCGTGCCGTTGAGCAGCGTGCTGCGCTTCTTCCCCGG
CGACTTGCAGGCGCTGTACAGCATTGCGGCGCTGGTGCTGTTGGTGACCA
TGGCCGTCACGGTGACGCGCACCAACGAGACGCCGCTCGGGTACGAGGCG
GTGCGCGCGGCAGCCGCGGACGACGGGGCGCACTCGCGCTACGACGCCGT
GCACCGCGTGGAGGAGGTGGGCGATGGCCCAAGCGGCTTCTTCCACGCAG
CAAGGACGGCACCGTACCCCTTTGTCGAGACGTTCACGGTGCAGTGCTTC
ATGTGGTTCGGCTGGTTTGCGCTGTTCGTGTTCGGCACATCGTGGATCGG
CAAGGAGGTGCTACACGGCGACTTTCACGCGGCGGAGGGCAGCGAGCTGC
GAGAACTGTACGACCGCGGCGTGCGGCTGGGCAACTTGGGCATCGGGCTG
CAGTCTGTGCTAACGATGGTGTGCGCGCCGCTGCTACCGACGCTGATGGC
GCGCACGTCGACGCAGACGGTGTACTTGGCGGCGAGCGTGCTGCTGGGCG
GCGCGCTGTCGGCCACGCTGCTGCTGGACAAGGCGCGGCAGGCGTGGATG
GCTACGTTGCTGCTGGCGAGCACGGGGTTCGCGTGGGCGGTGACGATGAC
GGTGCCGTGGAGCCTGATGAGCGAGGCGGTGTCCAAGGCGGCGCCACGCG
ACGCAGGGGTGTACTTTACGTTGTTCAACCTGTCGCAGTGCGTGCCCGAG
GTAGTGGTGTCCATCATGTCCGAGCGCGTGGAGAAGGCGACGGGACGACA
GGCAGTGATGCTGGGGCTGggcggcgtggcggcgttcggcggcggcgCGC
TGATTTTGGCGATGGGGCTCGGCAAGGACAGAGGCGTGGCAGTTGATGAC
GAAACAGATGGTTTAAGCGGCGCTCTCAGCAGCGGCGCGACCGTGTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:87715..89262+

>Ggra10206.t1 ID=Ggra10206.t1|Name=Ggra10206.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1548bp|location=Sequence derived from alignment at tig00000016_pilon:87715..89262+ (Gracilaria gracilis GNS1m male)
ATGGACGCCTTCCAGCCCAAGTCGTCGCCGTCATTCCACGACGCCGATGG
CGAACACGTCGACGCGCACGCACACTCGCCGCTCAAAGCGCCCTCCAAGC
GCTTCACCCACCGTCAGCTGCTGTCGCTCACCAGCGGGCTGGTCGGCATC
CAGTTCTGCTGGGCGGTACAAGTGGGCTACGTCACCAAGGCGCTGCTAGA
ACTCGGTCTCTCCAACCGCTTCGTATCGTACGCCTGGCTGGCCGGACCCA
TCGCCGGCATCCTCGTACAGCCCACCGTGGGCGTACTCTCCGACCGCTGC
ACGTCGCGACTCGGCCGCCGCCGTCCATTCCTCATCGTCGGCACGGCGTT
CACGCTGCTGTGTCTGTTCACCTTTTCGTACGCGCGCCAGATCGGCGCGT
GGCTGGGGGACGAGCCGAAGGCCGCCGTGTATGGCAACGCGCTCATCGTT
GCGGTGCTGTCGTTCTGGGCGCTGGACTTTGCCATCAACGCGGCGCAGGG
GCCGCTGCGCGCGCTGCTGGCGGACGTGGTGCCGCCCGAGCAGCACAAGC
AGGGAAACGCGTACTTTGCGTTCGCCACTGGTGTGGGCAACTGCGCCGGC
AGCTTTCTTGGCAGCGTGCCGTTGAGCAGCGTGCTGCGCTTCTTCCCCGG
CGACTTGCAGGCGCTGTACAGCATTGCGGCGCTGGTGCTGTTGGTGACCA
TGGCCGTCACGGTGACGCGCACCAACGAGACGCCGCTCGGGTACGAGGCG
GTGCGCGCGGCAGCCGCGGACGACGGGGCGCACTCGCGCTACGACGCCGT
GCACCGCGTGGAGGAGGTGGGCGATGGCCCAAGCGGCTTCTTCCACGCAG
CAAGGACGGCACCGTACCCCTTTGTCGAGACGTTCACGGTGCAGTGCTTC
ATGTGGTTCGGCTGGTTTGCGCTGTTCGTGTTCGGCACATCGTGGATCGG
CAAGGAGGTGCTACACGGCGACTTTCACGCGGCGGAGGGCAGCGAGCTGC
GAGAACTGTACGACCGCGGCGTGCGGCTGGGCAACTTGGGCATCGGGCTG
CAGTCTGTGCTAACGATGGTGTGCGCGCCGCTGCTACCGACGCTGATGGC
GCGCACGTCGACGCAGACGGTGTACTTGGCGGCGAGCGTGCTGCTGGGCG
GCGCGCTGTCGGCCACGCTGCTGCTGGACAAGGCGCGGCAGGCGTGGATG
GCTACGTTGCTGCTGGCGAGCACGGGGTTCGCGTGGGCGGTGACGATGAC
GGTGCCGTGGAGCCTGATGAGCGAGGCGGTGTCCAAGGCGGCGCCACGCG
ACGCAGGGGTGTACTTTACGTTGTTCAACCTGTCGCAGTGCGTGCCCGAG
GTAGTGGTGTCCATCATGTCCGAGCGCGTGGAGAAGGCGACGGGACGACA
GGCAGTGATGCTGGGGCTGggcggcgtggcggcgttcggcggcggcgCGC
TGATTTTGGCGATGGGGCTCGGCAAGGACAGAGGCGTGGCAGTTGATGAC
GAAACAGATGGTTTAAGCGGCGCTCTCAGCAGCGGCGCGACCGTGTAG
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