Ggra10205.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10205.t1
Unique NameGgra10205.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:86549..87475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10205Ggra10205Gracilaria gracilis GNS1m malegenetig00000016_pilon 86549..87475 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10205.t1.start1Ggra10205.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 86549..86551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10205.t1.CDS1Ggra10205.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 86549..87475 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10205.t1.exon1Ggra10205.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 86549..87475 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10205.t1.stop1Ggra10205.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 87473..87475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10205.t1Ggra10205.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 86549..87475 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10205.t1 ID=Ggra10205.t1|Name=Ggra10205.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MSKVHHSGASSSPPSPSPSPSPSRRSHSAAAPLSGRWRVVGGWSSLRRAH
AKSKSASAAPSRVSGRRDSTLRRDTAVAEQVTSRHRISLFLRRARARDTD
GAPPRSHSDDGDAERARGLFRRAQSHLVKSVGERAAGEGATYVQYAAELD
DASVERLRLGGRTKTNLRLLNEHDGEQHEHELIGEICLADFADGDDDFDM
LDGQSIDVAFEPTSAAMPSRASLKFDSAQLRWIGDEKEFAAFFAQVGLDE
LWEKEHQQWEEFQVPDHVVDEWRRSAEEHNVRCGIWNDVRDTDIRLLLRD
FEQRRRAV*
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spliced messenger RNA

>Ggra10205.t1 ID=Ggra10205.t1|Name=Ggra10205.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000016_pilon:86549..87475+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAAGTGCACCACTCCGGCGCGTCGTCGTCGCcgccgtcgccgtc
gccgtcgccgtcgccatcgcGCCGCTCGCACTCGGCGGCGGCGCCGCTGT
CAGGGCGCTGGCGCGTGGTGGGCGGCTGGTCGTCGCTGCGCCGCGCGCAC
GCCAAGAGCAAGAGCGCGTCGGCCGCGCCGTCGCGCGTGTCCGGGCGCCG
CGACTCCACGCTTCGACGCGACACCGCCGTCGCGGAGCAAGTCACGTCGC
GTCATCGCATCTCGCTGTTTCTGCGGCGCGCGCGCGCGCGCGACACGGAC
GGCGCGCCGCCGCGCAGCCATAGCGACGACGGCGACGCCGAGCGCGCACG
CGGCCTGTTTCGCCGCGCGCAGAGCCACTTGGTCAAGAGCGTGGGCGAGC
GCGCCGCGGGCGAGGGTGCCACGTACGTGCAGTACGCCGCCGAGCTGGAT
GACGCCTCCGTGGAGCGGCTGCGTCTGGGCGGCCGCACCAAGACCAACTT
GAGACTGCTCAATGAGCACGATGGCGAGCAGCATGAACACGAGCTCATTG
GCGAGATTTGTCTAGCTGATTTTGCGGACGGCGACGACGACTTTGACATG
CTGGACGGCCAGTCCATCGACGTGGCGTTCGAGCCCACTTCGGCCGCCAT
GCCGTCGCGCGCCAGCCTCAAGTTCGACAGCGCGCAGCTGCGCTGGATTG
GCGACGAAAAGGAGTTTGCCGCCTTCTTCGCGCAGGTGGGGCTGGACGAG
CTGTGGGAGAAGGAGCATCAGCAGTGGGAAGAGTTTCAGGTGCCTGACCA
CGTGGTCGACGAGTGGCGCCGCAGCGCCGAGGAGCATAATGTGCGCTGCG
GCATATGGAACGACGTGCGAGACACCGACATTCGACTGCTGCTGCGCGAC
TTTGAGCAGCGGCGGCGCGCCGTATAG
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protein sequence of Ggra10205.t1

>Ggra10205.t1 ID=Ggra10205.t1|Name=Ggra10205.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MSKVHHSGASSSPPSPSPSPSPSRRSHSAAAPLSGRWRVVGGWSSLRRAH
AKSKSASAAPSRVSGRRDSTLRRDTAVAEQVTSRHRISLFLRRARARDTD
GAPPRSHSDDGDAERARGLFRRAQSHLVKSVGERAAGEGATYVQYAAELD
DASVERLRLGGRTKTNLRLLNEHDGEQHEHELIGEICLADFADGDDDFDM
LDGQSIDVAFEPTSAAMPSRASLKFDSAQLRWIGDEKEFAAFFAQVGLDE
LWEKEHQQWEEFQVPDHVVDEWRRSAEEHNVRCGIWNDVRDTDIRLLLRD
FEQRRRAV*
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mRNA from alignment at tig00000016_pilon:86549..87475+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10205.t1 ID=Ggra10205.t1|Name=Ggra10205.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000016_pilon:86549..87475+ (Gracilaria gracilis GNS1m male)
ATGTCCAAAGTGCACCACTCCGGCGCGTCGTCGTCGCcgccgtcgccgtc
gccgtcgccgtcgccatcgcGCCGCTCGCACTCGGCGGCGGCGCCGCTGT
CAGGGCGCTGGCGCGTGGTGGGCGGCTGGTCGTCGCTGCGCCGCGCGCAC
GCCAAGAGCAAGAGCGCGTCGGCCGCGCCGTCGCGCGTGTCCGGGCGCCG
CGACTCCACGCTTCGACGCGACACCGCCGTCGCGGAGCAAGTCACGTCGC
GTCATCGCATCTCGCTGTTTCTGCGGCGCGCGCGCGCGCGCGACACGGAC
GGCGCGCCGCCGCGCAGCCATAGCGACGACGGCGACGCCGAGCGCGCACG
CGGCCTGTTTCGCCGCGCGCAGAGCCACTTGGTCAAGAGCGTGGGCGAGC
GCGCCGCGGGCGAGGGTGCCACGTACGTGCAGTACGCCGCCGAGCTGGAT
GACGCCTCCGTGGAGCGGCTGCGTCTGGGCGGCCGCACCAAGACCAACTT
GAGACTGCTCAATGAGCACGATGGCGAGCAGCATGAACACGAGCTCATTG
GCGAGATTTGTCTAGCTGATTTTGCGGACGGCGACGACGACTTTGACATG
CTGGACGGCCAGTCCATCGACGTGGCGTTCGAGCCCACTTCGGCCGCCAT
GCCGTCGCGCGCCAGCCTCAAGTTCGACAGCGCGCAGCTGCGCTGGATTG
GCGACGAAAAGGAGTTTGCCGCCTTCTTCGCGCAGGTGGGGCTGGACGAG
CTGTGGGAGAAGGAGCATCAGCAGTGGGAAGAGTTTCAGGTGCCTGACCA
CGTGGTCGACGAGTGGCGCCGCAGCGCCGAGGAGCATAATGTGCGCTGCG
GCATATGGAACGACGTGCGAGACACCGACATTCGACTGCTGCTGCGCGAC
TTTGAGCAGCGGCGGCGCGCCGTATAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:86549..87475+

>Ggra10205.t1 ID=Ggra10205.t1|Name=Ggra10205.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000016_pilon:86549..87475+ (Gracilaria gracilis GNS1m male)
ATGTCCAAAGTGCACCACTCCGGCGCGTCGTCGTCGCcgccgtcgccgtc
gccgtcgccgtcgccatcgcGCCGCTCGCACTCGGCGGCGGCGCCGCTGT
CAGGGCGCTGGCGCGTGGTGGGCGGCTGGTCGTCGCTGCGCCGCGCGCAC
GCCAAGAGCAAGAGCGCGTCGGCCGCGCCGTCGCGCGTGTCCGGGCGCCG
CGACTCCACGCTTCGACGCGACACCGCCGTCGCGGAGCAAGTCACGTCGC
GTCATCGCATCTCGCTGTTTCTGCGGCGCGCGCGCGCGCGCGACACGGAC
GGCGCGCCGCCGCGCAGCCATAGCGACGACGGCGACGCCGAGCGCGCACG
CGGCCTGTTTCGCCGCGCGCAGAGCCACTTGGTCAAGAGCGTGGGCGAGC
GCGCCGCGGGCGAGGGTGCCACGTACGTGCAGTACGCCGCCGAGCTGGAT
GACGCCTCCGTGGAGCGGCTGCGTCTGGGCGGCCGCACCAAGACCAACTT
GAGACTGCTCAATGAGCACGATGGCGAGCAGCATGAACACGAGCTCATTG
GCGAGATTTGTCTAGCTGATTTTGCGGACGGCGACGACGACTTTGACATG
CTGGACGGCCAGTCCATCGACGTGGCGTTCGAGCCCACTTCGGCCGCCAT
GCCGTCGCGCGCCAGCCTCAAGTTCGACAGCGCGCAGCTGCGCTGGATTG
GCGACGAAAAGGAGTTTGCCGCCTTCTTCGCGCAGGTGGGGCTGGACGAG
CTGTGGGAGAAGGAGCATCAGCAGTGGGAAGAGTTTCAGGTGCCTGACCA
CGTGGTCGACGAGTGGCGCCGCAGCGCCGAGGAGCATAATGTGCGCTGCG
GCATATGGAACGACGTGCGAGACACCGACATTCGACTGCTGCTGCGCGAC
TTTGAGCAGCGGCGGCGCGCCGTATAG
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