Ggra10203.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10203.t1
Unique NameGgra10203.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length82
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:83166..83608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10203Ggra10203Gracilaria gracilis GNS1m malegenetig00000016_pilon 83166..83608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10203.t1Ggra10203.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 83166..83608 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10203.t1.stop1Ggra10203.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 83166..83168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10203.t1.CDS1Ggra10203.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 83166..83346 -
Ggra10203.t1.CDS2Ggra10203.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 83449..83485 -
Ggra10203.t1.CDS3Ggra10203.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 83581..83608 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10203.t1.exon1Ggra10203.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 83166..83346 -
Ggra10203.t1.exon2Ggra10203.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 83449..83485 -
Ggra10203.t1.exon3Ggra10203.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 83581..83608 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10203.t1.intron1Ggra10203.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 83347..83448 -
Ggra10203.t1.intron2Ggra10203.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 83486..83580 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10203.t1.start1Ggra10203.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 83606..83608 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10203.t1 ID=Ggra10203.t1|Name=Ggra10203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=82bp
MNDLSDLHLDKLAEMGVGRDIRTEGDESIVALGSNSRYVLHFSFRPECLA
ELNTSGICVGVEITHEVGSVLNSMMVTTVAM*
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spliced messenger RNA

>Ggra10203.t1 ID=Ggra10203.t1|Name=Ggra10203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=246bp|location=Sequence derived from alignment at tig00000016_pilon:83166..83608- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGACTTAAGCGATTTGCATCTGGACAAGTTAGCAGAGATGGGAGT
GGGCAGAGACATACGAACTGAAGGTGACGAGAGTATCGTAGCACTAGGCA
GCAACAGCCGATACGTTCTCCACTTCTCTTTTAGGCCAGAGTGCTTAGCA
GAACTAAATACGTCGGGGATATGCGTCGGGGTAGAGATTACCCACGAAGT
TGGTTCGGTATTGAACAGCATGATGGTGACAACCGTAGCTATGTGA
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protein sequence of Ggra10203.t1

>Ggra10203.t1 ID=Ggra10203.t1|Name=Ggra10203.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=82bp
MNDLSDLHLDKLAEMGVGRDIRTEGDESIVALGSNSRYVLHFSFRPECLA
ELNTSGICVGVEITHEVGSVLNSMMVTTVAM*
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mRNA from alignment at tig00000016_pilon:83166..83608-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10203.t1 ID=Ggra10203.t1|Name=Ggra10203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=443bp|location=Sequence derived from alignment at tig00000016_pilon:83166..83608- (Gracilaria gracilis GNS1m male)
ATGAACGACTTAAGCGATTTGCATCTGGGTAAGGGGTCGCTCGAACGAAT
CTTTGATAATGAACTAGGACGTCGTGAATGAAATTGAAAGTTCCGAGCTA
GGATTCGGCATCTTCTTCAACAGACAAGTTAGCAGAGATGGGAGTGGGCA
GAGACATACGGTAAGTTCAGAATTTAGTCAAGATCCATTTCCAAACCGTT
GGCGTTGCCCTCTCGGCCTTCAAAATATACTGAACGTTGTCCGGATTGAT
ATCATAACAAAGAACTGAAGGTGACGAGAGTATCGTAGCACTAGGCAGCA
ACAGCCGATACGTTCTCCACTTCTCTTTTAGGCCAGAGTGCTTAGCAGAA
CTAAATACGTCGGGGATATGCGTCGGGGTAGAGATTACCCACGAAGTTGG
TTCGGTATTGAACAGCATGATGGTGACAACCGTAGCTATGTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:83166..83608-

>Ggra10203.t1 ID=Ggra10203.t1|Name=Ggra10203.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=246bp|location=Sequence derived from alignment at tig00000016_pilon:83166..83608- (Gracilaria gracilis GNS1m male)
ATGAACGACTTAAGCGATTTGCATCTGGACAAGTTAGCAGAGATGGGAGT
GGGCAGAGACATACGAACTGAAGGTGACGAGAGTATCGTAGCACTAGGCA
GCAACAGCCGATACGTTCTCCACTTCTCTTTTAGGCCAGAGTGCTTAGCA
GAACTAAATACGTCGGGGATATGCGTCGGGGTAGAGATTACCCACGAAGT
TGGTTCGGTATTGAACAGCATGATGGTGACAACCGTAGCTATGTGA
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