Ggra10201.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10201.t1
Unique NameGgra10201.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:77896..79538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707052.1
PFAMsDAHP_synth_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00435
KEGG koko:K01626
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
Evalue3.17e-234
EggNOG OGsCOG3200@1|root,2QPP7@2759|Eukaryota
EC2.5.1.54
Description3-deoxy-7-phosphoheptulonate synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10201Ggra10201Gracilaria gracilis GNS1m malegenetig00000016_pilon 77896..79538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10201.t1Ggra10201.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 77896..79538 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10201.t1.start1Ggra10201.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 77896..77898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10201.t1.CDS1Ggra10201.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 77896..79351 +
Ggra10201.t1.CDS2Ggra10201.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 79474..79538 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10201.t1.exon1Ggra10201.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 77896..79351 +
Ggra10201.t1.exon2Ggra10201.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 79474..79538 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10201.t1.intron1Ggra10201.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 79352..79473 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10201.t1.stop1Ggra10201.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 79536..79538 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10201.t1 ID=Ggra10201.t1|Name=Ggra10201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp
MLPAFLPPLPLRASARANVVCASRSVPRMVATEPPATTPPSTTPSPSTPP
ASTRLWTPDSWRSMPIKQVPEYPDPKALSDMENRLRRSLPLVFSGECEAL
KQLLATAANGEAFVIQGGDCAESFKEFDTYGGKNIADTFTLVIQMSIMLM
YALRRPVVKILRAAGQFAKPRSSPYEKKKNQELSLPSYRGDIINAAGFTL
DERLPDPQRMYKAFVQSTATINLLRTLASGGALDLHRVHDISLQFVRNTP
QGRKYAKYASNIDNAIAFMEAIGLQSDSYKVKQAEFYVSHESLLLPYEES
LCRQDPETGKYYATSGHFLWLGDRTRQPDGAHVEFMRGISNPIGIKCGPS
LSPEDLVQLLDILNPDNEPGRITLITRVGAGKVHEHLPRFIETVKREGRN
VVWSCDPCHGNTETTRGGFKTRKFENVVREVTEFFAVHESMGTYPGGVHL
ELTGQDVTECVGGMMELTDEDLKKRYETHCDPRLNASQALELAMKLSEEM
QNRCLL*
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spliced messenger RNA

>Ggra10201.t1 ID=Ggra10201.t1|Name=Ggra10201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000016_pilon:77896..79538+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCTGCCTTCCTGCCACCGCTGCCGCTTCGCGCCTCTGCGCGCGC
CAATGTCGTCTGTGCGTCGCGCTCCGTCCCGCGAATGGTCGCCACCGAGC
CGCCGGCTACCACGCCGCCGTCTACCACGCCGTCGCCCTCCACGCCGCCG
GCCTCCACCCGCCTGTGGACGCCCGATAGCTGGCGCTCCATGCCTATCAA
GCAGGTGCCGGAATACCCCGATCCTAAGGCCCTGAGCGACATGGAGAACC
GTCTCCGTCGCTCTCTGCCGCTCGTGTTCTCTGGCGAGTGCGAGGCGCTC
AAGCAGCTGCTGGCCACCGCCGCCAACGGCGAGGCCTTCGTCATCCAGGG
CGGTGATTGCGCAGAGTCCTTCAAGGAGTTTGATACCTACGGCGGCAAGA
ATATTGCTGATACCTTCACCCTCGTCATTCAGATGTCCATCATGCTCATG
TACGCGCTCAGGAGGCCCGTCGTCAAGATCCTCCGAGCCGCTGGCCAGTT
TGCAAAGCCGAGAAGCAGCCCGTATGAAAAGAAGAAGAACCAGGAGCTCT
CGCTGCCGTCGTATCGCGGCGACATCATCAACGCGGCGGGCTTCACTCTG
GACGAGCGCCTCCCAGACCCCCAACGCATGTACAAGGCCTTTGTTCAGTC
AACTGCAACCATCAACTTGCTGCGTACGCTCGCTTCCGGCGGTGCTCTTG
ATCTCCACCGTGTGCATGACATTAGTTTGCAGTTCGTGAGAAACACCCCT
CAGGGGCGCAAGTACGCAAAGTATGCCAGCAACATTGATAACGCCATTGC
TTTCATGGAGGCTATCGGTCTACAAAGCGATTCGTACAAAGTCAAGCAGG
CCGAGTTTTACGTGTCCCATGAGAGTCTGTTGCTTCCGTATGAGGAGTCT
CTGTGTCGACAAGACCCAGAAACTGGCAAGTACTACGCCACTTCGGGTCA
TTTCCTCTGGCTTGGCGATCGTACCAGACAACCCGACGGCGCTCATGTAG
AGTTCATGCGTGGTATTTCCAATCCGATTGGTATCAAGTGCGGACCGTCC
CTTTCTCCTGAGGATCTTGTACAGCTGCTCGATATCCTCAACCCTGATAA
TGAGCCTGGAAGAATCACACTCATTACTAGAGTGGGCGCTGGAAAGGTTC
ATGAACATCTCCCGAGGTTCATTGAAACCGTCAAGCGTGAAGGCAGAAAC
GTCGTCTGGAGCTGCGATCCGTGCCATGGAAACACAGAGACCACCCGAGG
TGGCTTCAAGACCAGAAAGTTTGAAAACGTCGTGCGGGAAGTCACTGAGT
TCTTTGCCGTTCATGAGAGCATGGGCACCTATCCGGGTGGCGTACACCTG
GAACTCACAGGTCAGGACGTCACAGAATGTGTCGGTGGCATGATGGAACT
CACTGATGAAGATTTGAAGAAGCGTTACGAAACTCATTGTGACCCGCGAC
TTAATGCATCACAAGCTCTTGAGCTGGCTATGAAGCTATCGGAAGAAATG
CAAAACCGATGCCTCTTATAG
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protein sequence of Ggra10201.t1

>Ggra10201.t1 ID=Ggra10201.t1|Name=Ggra10201.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=507bp
MLPAFLPPLPLRASARANVVCASRSVPRMVATEPPATTPPSTTPSPSTPP
ASTRLWTPDSWRSMPIKQVPEYPDPKALSDMENRLRRSLPLVFSGECEAL
KQLLATAANGEAFVIQGGDCAESFKEFDTYGGKNIADTFTLVIQMSIMLM
YALRRPVVKILRAAGQFAKPRSSPYEKKKNQELSLPSYRGDIINAAGFTL
DERLPDPQRMYKAFVQSTATINLLRTLASGGALDLHRVHDISLQFVRNTP
QGRKYAKYASNIDNAIAFMEAIGLQSDSYKVKQAEFYVSHESLLLPYEES
LCRQDPETGKYYATSGHFLWLGDRTRQPDGAHVEFMRGISNPIGIKCGPS
LSPEDLVQLLDILNPDNEPGRITLITRVGAGKVHEHLPRFIETVKREGRN
VVWSCDPCHGNTETTRGGFKTRKFENVVREVTEFFAVHESMGTYPGGVHL
ELTGQDVTECVGGMMELTDEDLKKRYETHCDPRLNASQALELAMKLSEEM
QNRCLL*
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mRNA from alignment at tig00000016_pilon:77896..79538+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10201.t1 ID=Ggra10201.t1|Name=Ggra10201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1643bp|location=Sequence derived from alignment at tig00000016_pilon:77896..79538+ (Gracilaria gracilis GNS1m male)
ATGCTGCCTGCCTTCCTGCCACCGCTGCCGCTTCGCGCCTCTGCGCGCGC
CAATGTCGTCTGTGCGTCGCGCTCCGTCCCGCGAATGGTCGCCACCGAGC
CGCCGGCTACCACGCCGCCGTCTACCACGCCGTCGCCCTCCACGCCGCCG
GCCTCCACCCGCCTGTGGACGCCCGATAGCTGGCGCTCCATGCCTATCAA
GCAGGTGCCGGAATACCCCGATCCTAAGGCCCTGAGCGACATGGAGAACC
GTCTCCGTCGCTCTCTGCCGCTCGTGTTCTCTGGCGAGTGCGAGGCGCTC
AAGCAGCTGCTGGCCACCGCCGCCAACGGCGAGGCCTTCGTCATCCAGGG
CGGTGATTGCGCAGAGTCCTTCAAGGAGTTTGATACCTACGGCGGCAAGA
ATATTGCTGATACCTTCACCCTCGTCATTCAGATGTCCATCATGCTCATG
TACGCGCTCAGGAGGCCCGTCGTCAAGATCCTCCGAGCCGCTGGCCAGTT
TGCAAAGCCGAGAAGCAGCCCGTATGAAAAGAAGAAGAACCAGGAGCTCT
CGCTGCCGTCGTATCGCGGCGACATCATCAACGCGGCGGGCTTCACTCTG
GACGAGCGCCTCCCAGACCCCCAACGCATGTACAAGGCCTTTGTTCAGTC
AACTGCAACCATCAACTTGCTGCGTACGCTCGCTTCCGGCGGTGCTCTTG
ATCTCCACCGTGTGCATGACATTAGTTTGCAGTTCGTGAGAAACACCCCT
CAGGGGCGCAAGTACGCAAAGTATGCCAGCAACATTGATAACGCCATTGC
TTTCATGGAGGCTATCGGTCTACAAAGCGATTCGTACAAAGTCAAGCAGG
CCGAGTTTTACGTGTCCCATGAGAGTCTGTTGCTTCCGTATGAGGAGTCT
CTGTGTCGACAAGACCCAGAAACTGGCAAGTACTACGCCACTTCGGGTCA
TTTCCTCTGGCTTGGCGATCGTACCAGACAACCCGACGGCGCTCATGTAG
AGTTCATGCGTGGTATTTCCAATCCGATTGGTATCAAGTGCGGACCGTCC
CTTTCTCCTGAGGATCTTGTACAGCTGCTCGATATCCTCAACCCTGATAA
TGAGCCTGGAAGAATCACACTCATTACTAGAGTGGGCGCTGGAAAGGTTC
ATGAACATCTCCCGAGGTTCATTGAAACCGTCAAGCGTGAAGGCAGAAAC
GTCGTCTGGAGCTGCGATCCGTGCCATGGAAACACAGAGACCACCCGAGG
TGGCTTCAAGACCAGAAAGTTTGAAAACGTCGTGCGGGAAGTCACTGAGT
TCTTTGCCGTTCATGAGAGCATGGGCACCTATCCGGGTGGCGTACACCTG
GAACTCACAGGTCAGGACGTCACAGAATGTGTCGGTGGCATGATGGAACT
CACTGATGAAGATTTGAAGAAGCGTTACGAAACTCATTGTGACCCGCGAC
TTAATGGTAAGCTTGTACAAATCATTCATTCCAAATCATATATCAGAAAC
GCGAATCGCACCCGATCAACAAGCTCATTCTAACCGTTCGATCATTCTTT
TCGTATCTCTCTAACTTTTTTCTCGCAGCATCACAAGCTCTTGAGCTGGC
TATGAAGCTATCGGAAGAAATGCAAAACCGATGCCTCTTATAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:77896..79538+

>Ggra10201.t1 ID=Ggra10201.t1|Name=Ggra10201.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1521bp|location=Sequence derived from alignment at tig00000016_pilon:77896..79538+ (Gracilaria gracilis GNS1m male)
ATGCTGCCTGCCTTCCTGCCACCGCTGCCGCTTCGCGCCTCTGCGCGCGC
CAATGTCGTCTGTGCGTCGCGCTCCGTCCCGCGAATGGTCGCCACCGAGC
CGCCGGCTACCACGCCGCCGTCTACCACGCCGTCGCCCTCCACGCCGCCG
GCCTCCACCCGCCTGTGGACGCCCGATAGCTGGCGCTCCATGCCTATCAA
GCAGGTGCCGGAATACCCCGATCCTAAGGCCCTGAGCGACATGGAGAACC
GTCTCCGTCGCTCTCTGCCGCTCGTGTTCTCTGGCGAGTGCGAGGCGCTC
AAGCAGCTGCTGGCCACCGCCGCCAACGGCGAGGCCTTCGTCATCCAGGG
CGGTGATTGCGCAGAGTCCTTCAAGGAGTTTGATACCTACGGCGGCAAGA
ATATTGCTGATACCTTCACCCTCGTCATTCAGATGTCCATCATGCTCATG
TACGCGCTCAGGAGGCCCGTCGTCAAGATCCTCCGAGCCGCTGGCCAGTT
TGCAAAGCCGAGAAGCAGCCCGTATGAAAAGAAGAAGAACCAGGAGCTCT
CGCTGCCGTCGTATCGCGGCGACATCATCAACGCGGCGGGCTTCACTCTG
GACGAGCGCCTCCCAGACCCCCAACGCATGTACAAGGCCTTTGTTCAGTC
AACTGCAACCATCAACTTGCTGCGTACGCTCGCTTCCGGCGGTGCTCTTG
ATCTCCACCGTGTGCATGACATTAGTTTGCAGTTCGTGAGAAACACCCCT
CAGGGGCGCAAGTACGCAAAGTATGCCAGCAACATTGATAACGCCATTGC
TTTCATGGAGGCTATCGGTCTACAAAGCGATTCGTACAAAGTCAAGCAGG
CCGAGTTTTACGTGTCCCATGAGAGTCTGTTGCTTCCGTATGAGGAGTCT
CTGTGTCGACAAGACCCAGAAACTGGCAAGTACTACGCCACTTCGGGTCA
TTTCCTCTGGCTTGGCGATCGTACCAGACAACCCGACGGCGCTCATGTAG
AGTTCATGCGTGGTATTTCCAATCCGATTGGTATCAAGTGCGGACCGTCC
CTTTCTCCTGAGGATCTTGTACAGCTGCTCGATATCCTCAACCCTGATAA
TGAGCCTGGAAGAATCACACTCATTACTAGAGTGGGCGCTGGAAAGGTTC
ATGAACATCTCCCGAGGTTCATTGAAACCGTCAAGCGTGAAGGCAGAAAC
GTCGTCTGGAGCTGCGATCCGTGCCATGGAAACACAGAGACCACCCGAGG
TGGCTTCAAGACCAGAAAGTTTGAAAACGTCGTGCGGGAAGTCACTGAGT
TCTTTGCCGTTCATGAGAGCATGGGCACCTATCCGGGTGGCGTACACCTG
GAACTCACAGGTCAGGACGTCACAGAATGTGTCGGTGGCATGATGGAACT
CACTGATGAAGATTTGAAGAAGCGTTACGAAACTCATTGTGACCCGCGAC
TTAATGCATCACAAGCTCTTGAGCTGGCTATGAAGCTATCGGAAGAAATG
CAAAACCGATGCCTCTTATAG
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