Ggra1020.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1020.t1
Unique NameGgra1020.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:594530..594940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO96363
PFAMsHistone
Max annot lvl3041|Chlorophyta
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Evalue1.92e-81
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota,37TRG@33090|Viridiplantae,34HJ1@3041|Chlorophyta
Descriptionhistone H3
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1020Ggra1020Gracilaria gracilis GNS1m malegenetig00000027_pilon 594530..594940 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1020.t1.start1Ggra1020.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 594530..594532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1020.t1.CDS1Ggra1020.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 594530..594940 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1020.t1.exon1Ggra1020.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 594530..594940 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1020.t1.stop1Ggra1020.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 594938..594940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1020.t1Ggra1020.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 594530..594940 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1020.t1 ID=Ggra1020.t1|Name=Ggra1020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR
EIRKFQKSTELLIRKLPFQRLVREIAQDYKSDLRFQGSAVLALQEASEAY
LVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA*
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spliced messenger RNA

>Ggra1020.t1 ID=Ggra1020.t1|Name=Ggra1020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000027_pilon:594530..594940+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGTACCAAGCAGACGGCGCGAAAGTCGACGGGCGGCAAGGCGCC
GCGCAAGCAGCTGGCCACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACGG
GCGGCGTGAAGAAGCCGCATCGCTTCCGCCCCGGCACGGTGGCGCTGCGC
GAGATCCGCAAGTTCCAGAAGTCGACCGAGCTACTCATCCGCAAGCTGCC
GTTCCAGCGGCTGGTGCGCGAGATCGCGCAGGACTACAAGTCCGACCTGA
GGTTCCAGGGCAGCGCCGTGCTCGCGCTGCAGGAGGCCAGTGAGGCTTAC
CTGGTGGGGCTGTTCGAGGATACTAACTTGTGCGCCATTCATGCCAAGCG
CGTGACGATCATGCCTAAGGACGTGCAGCTGGCGCGGCGGATTCGGGGGG
AGAGGGCGTAG
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protein sequence of Ggra1020.t1

>Ggra1020.t1 ID=Ggra1020.t1|Name=Ggra1020.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR
EIRKFQKSTELLIRKLPFQRLVREIAQDYKSDLRFQGSAVLALQEASEAY
LVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA*
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mRNA from alignment at tig00000027_pilon:594530..594940+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1020.t1 ID=Ggra1020.t1|Name=Ggra1020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000027_pilon:594530..594940+ (Gracilaria gracilis GNS1m male)
ATGGCGCGTACCAAGCAGACGGCGCGAAAGTCGACGGGCGGCAAGGCGCC
GCGCAAGCAGCTGGCCACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACGG
GCGGCGTGAAGAAGCCGCATCGCTTCCGCCCCGGCACGGTGGCGCTGCGC
GAGATCCGCAAGTTCCAGAAGTCGACCGAGCTACTCATCCGCAAGCTGCC
GTTCCAGCGGCTGGTGCGCGAGATCGCGCAGGACTACAAGTCCGACCTGA
GGTTCCAGGGCAGCGCCGTGCTCGCGCTGCAGGAGGCCAGTGAGGCTTAC
CTGGTGGGGCTGTTCGAGGATACTAACTTGTGCGCCATTCATGCCAAGCG
CGTGACGATCATGCCTAAGGACGTGCAGCTGGCGCGGCGGATTCGGGGGG
AGAGGGCGTAG
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Coding sequence (CDS) from alignment at tig00000027_pilon:594530..594940+

>Ggra1020.t1 ID=Ggra1020.t1|Name=Ggra1020.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00000027_pilon:594530..594940+ (Gracilaria gracilis GNS1m male)
ATGGCGCGTACCAAGCAGACGGCGCGAAAGTCGACGGGCGGCAAGGCGCC
GCGCAAGCAGCTGGCCACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACGG
GCGGCGTGAAGAAGCCGCATCGCTTCCGCCCCGGCACGGTGGCGCTGCGC
GAGATCCGCAAGTTCCAGAAGTCGACCGAGCTACTCATCCGCAAGCTGCC
GTTCCAGCGGCTGGTGCGCGAGATCGCGCAGGACTACAAGTCCGACCTGA
GGTTCCAGGGCAGCGCCGTGCTCGCGCTGCAGGAGGCCAGTGAGGCTTAC
CTGGTGGGGCTGTTCGAGGATACTAACTTGTGCGCCATTCATGCCAAGCG
CGTGACGATCATGCCTAAGGACGTGCAGCTGGCGCGGCGGATTCGGGGGG
AGAGGGCGTAG
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