Ggra10199.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10199.t1
Unique NameGgra10199.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length607
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:74343..76284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue3.61e-94
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10199Ggra10199Gracilaria gracilis GNS1m malegenetig00000016_pilon 74343..76284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10199.t1Ggra10199.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 74343..76284 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10199.t1.stop1Ggra10199.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 74343..74345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10199.t1.CDS1Ggra10199.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 74343..76025 -
Ggra10199.t1.CDS2Ggra10199.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 76147..76284 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10199.t1.exon1Ggra10199.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 74343..76025 -
Ggra10199.t1.exon2Ggra10199.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 76147..76284 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10199.t1.intron1Ggra10199.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 76026..76146 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10199.t1.start1Ggra10199.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 76282..76284 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10199.t1 ID=Ggra10199.t1|Name=Ggra10199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=607bp
MSALRHGPPLAMNGYMDKEGRKLRARKTRYFKLKDSALFNHRRKDSLPTW
GVSLIDSRVAVGHKGEIIVQLFDGKKILLFPHSRSECDQWVDLLQRASRR
KIGNYYGVTGLVGMGSFAEVRIGYDKSSGQQVAIKVMKKNKRDTELMRSV
ECEMNFISKNIDHCNIVGTYDVFDTRDNLFIVMEYMPGGMLYDILANEGY
FSEKNAASVMSDLLQAVHCLHDNDIVHRDIKPENVLAVNKTWPLNVKLAD
FGLADFVLENSFGEKSTCGMYGTPFFVAPEVIRAETYTPAVDIWSLGVLA
YNMLSGKLPFDGNNIKEVLRRVRSGKYSFPDAEWADISAHAKDFIHGLLE
LEPKRRLTAHQALQHPWLTSSDISERAITNDRSALGYEQRKLRMSSMAID
DVAGLLSLEEDEDHADDHGLRALSRLFPGKSSKSAKSSRSSGSSRGRAAV
EQRARDMDDSAAVSNAAPLRIAQVAEEEGALSEVSTGSQLQAVGEFGEFA
RWEEALRPNMVAWADGGRGGGRGGGGGGGGGAYQGGLQFNDKFTGGSADD
FALPAILSVKDIVRRKREATSGGGDGGGVGRGAAIAHESDSDGDDFATAV
ESRALV*
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spliced messenger RNA

>Ggra10199.t1 ID=Ggra10199.t1|Name=Ggra10199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00000016_pilon:74343..76284- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCTTGCGACATGGCCCGCCGCTGGCCATGAATGGCTACATGGA
CAAGGAGGGCCGCAAGTTGCGTGCCAGGAAGACGCGCTACTTCAAGCTCA
AGGATTCCGCTCTCTTCAATCATCGCCGGAAGGATTCGCTTCCTACATGG
GGTGTCAGCCTCATCGACAGTCGCGTGGCCGTCGGTCACAAGGGCGAAAT
CATCGTGCAGTTATTTGACGGCAAGAAGATTTTGCTCTTCCCGCACTCAA
GATCCGAGTGTGACCAATGGGTCGACCTGCTGCAGCGCGCGTCGCGCCGC
AAGATAGGCAACTACTACGGAGTCACCGGCCTCGTTGGCATGGGCTCCTT
TGCAGAGGTGCGCATAGGCTATGACAAGTCGTCGGGCCAGCAAGTCGCCA
TCAAGGTCATGAAGAAGAACAAGCGCGATACCGAGCTCATGCGAAGCGTC
GAGTGTGAGATGAACTTCATCTCCAAGAACATTGACCACTGCAACATTGT
GGGCACGTATGACGTGTTCGACACCCGTGACAACCTGTTTATTGTCATGG
AGTACATGCCGGGCGGTATGTTGTACGACATCCTCGCTAACGAGGGCTAC
TTTTCGGAGAAGAACGCCGCCAGCGTTATGAGCGATCTGCTTCAGGCCGT
ACACTGTCTGCACGATAACGATATCGTGCACCGCGATATCAAGCCGGAGA
ACGTGTTGGCCGTCAACAAGACGTGGCCTCTCAACGTCAAGCTGGCCGAT
TTCGGCCTAGCTGATTTTGTGCTGGAGAACTCATTCGGCGAGAAGTCCAC
GTGCGGCATGTACGGTACGCCTTTTTTCGTGGCGCCCGAGGTTATCCGCG
CGGAGACGTACACACCCGCTGTGGATATCTGGTCGTTGGGCGTGCTGGCG
TACAACATGCTGAGCGGCAAACTGCCGTTCGACGGCAACAATATCAAGGA
GGTGCTACGGCGCGTGCGCAGCGGCAAGTACTCGTTCCCGGACGCGGAGT
GGGCGGATATATCGGCGCATGCGAAGGACTTCATCCATGGGCTGTTGGAA
CTTGAGCCCAAGCGACGGCTGACGGCGCATCAGGCGCTGCAACACCCGTG
GCTGACATCGAGCGACATCTCGGAGCGCGCCATCACGAACGACCGGTCGG
CGCTGGGTTACGAGCAGCGCAAGCTGCGAATGTCGTCGATGGCGATCGAT
GACGTGGCGGGGTTGTTGAGCCTGGAGGAAGACGAGGACCATGCGGACGA
CCACGGGCTGCGTGCGCTGTCGCGGCTGTTCCCGGGAAAGAGCAGTAAGA
GCGCAAAGAGCTCGCGGTCATCGGGGTCGAGCCGGGGGCGTGCCGCGGTG
GAGCAGCGCGCACGAGACATGGACGACAGCGCGGCGGTGAGCAACGCGGC
GCCGCTGCGCATCGCGCAGGTGGCGGAGGAGGAAGGGGCGCTGAGCGAGG
TGTCAACGGGCAGTCAGCTACAGGCGGTGGGTGAGTTTGGGGAGTTTGCA
CGGTGGGAGGAGGCGCTACGGCCCAACATGGTGGCGTGGGCGGACGGCGG
GCGTGGCGGCGGGCGCGGCGGCGGCGGAGGAGGAGGAGGCGGCGCGTATC
AAGGCGGGCTGCAGTTCAACGATAAGTTCACCGGCGGGAGCGCGGACGAC
TTTGCGCTGCCGGCCATCCTGTCGGTGAAGGACATTGTGCGACGGAAGCG
GGAGGCGACGAGCGGCGGCGGCGACGGCGGCGGCGTGGGCAGAGGCGCGG
CGATTGCGCATGAGAGCGACTCGGACGGCGATGACTTCGCTACGGCCGTG
GAGAGCAGGGCGCTGGTGTAA
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protein sequence of Ggra10199.t1

>Ggra10199.t1 ID=Ggra10199.t1|Name=Ggra10199.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=607bp
MSALRHGPPLAMNGYMDKEGRKLRARKTRYFKLKDSALFNHRRKDSLPTW
GVSLIDSRVAVGHKGEIIVQLFDGKKILLFPHSRSECDQWVDLLQRASRR
KIGNYYGVTGLVGMGSFAEVRIGYDKSSGQQVAIKVMKKNKRDTELMRSV
ECEMNFISKNIDHCNIVGTYDVFDTRDNLFIVMEYMPGGMLYDILANEGY
FSEKNAASVMSDLLQAVHCLHDNDIVHRDIKPENVLAVNKTWPLNVKLAD
FGLADFVLENSFGEKSTCGMYGTPFFVAPEVIRAETYTPAVDIWSLGVLA
YNMLSGKLPFDGNNIKEVLRRVRSGKYSFPDAEWADISAHAKDFIHGLLE
LEPKRRLTAHQALQHPWLTSSDISERAITNDRSALGYEQRKLRMSSMAID
DVAGLLSLEEDEDHADDHGLRALSRLFPGKSSKSAKSSRSSGSSRGRAAV
EQRARDMDDSAAVSNAAPLRIAQVAEEEGALSEVSTGSQLQAVGEFGEFA
RWEEALRPNMVAWADGGRGGGRGGGGGGGGGAYQGGLQFNDKFTGGSADD
FALPAILSVKDIVRRKREATSGGGDGGGVGRGAAIAHESDSDGDDFATAV
ESRALV*
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mRNA from alignment at tig00000016_pilon:74343..76284-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10199.t1 ID=Ggra10199.t1|Name=Ggra10199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1942bp|location=Sequence derived from alignment at tig00000016_pilon:74343..76284- (Gracilaria gracilis GNS1m male)
ATGAGCGCCTTGCGACATGGCCCGCCGCTGGCCATGAATGGCTACATGGA
CAAGGAGGGCCGCAAGTTGCGTGCCAGGAAGACGCGCTACTTCAAGCTCA
AGGATTCCGCTCTCTTCAATCATCGCCGGAAGGATTCGGTGCGTTATCGC
TATCATTCTCTCGCGCCCCAACTGCGCGCCGTGCTCCCTCGCGCGCGTGC
GAGCGCTTTGCGCGATGTCACTAACCTCTCTTTTTTGTTCTTTGTGGAGT
TGTGTGTAGCTTCCTACATGGGGTGTCAGCCTCATCGACAGTCGCGTGGC
CGTCGGTCACAAGGGCGAAATCATCGTGCAGTTATTTGACGGCAAGAAGA
TTTTGCTCTTCCCGCACTCAAGATCCGAGTGTGACCAATGGGTCGACCTG
CTGCAGCGCGCGTCGCGCCGCAAGATAGGCAACTACTACGGAGTCACCGG
CCTCGTTGGCATGGGCTCCTTTGCAGAGGTGCGCATAGGCTATGACAAGT
CGTCGGGCCAGCAAGTCGCCATCAAGGTCATGAAGAAGAACAAGCGCGAT
ACCGAGCTCATGCGAAGCGTCGAGTGTGAGATGAACTTCATCTCCAAGAA
CATTGACCACTGCAACATTGTGGGCACGTATGACGTGTTCGACACCCGTG
ACAACCTGTTTATTGTCATGGAGTACATGCCGGGCGGTATGTTGTACGAC
ATCCTCGCTAACGAGGGCTACTTTTCGGAGAAGAACGCCGCCAGCGTTAT
GAGCGATCTGCTTCAGGCCGTACACTGTCTGCACGATAACGATATCGTGC
ACCGCGATATCAAGCCGGAGAACGTGTTGGCCGTCAACAAGACGTGGCCT
CTCAACGTCAAGCTGGCCGATTTCGGCCTAGCTGATTTTGTGCTGGAGAA
CTCATTCGGCGAGAAGTCCACGTGCGGCATGTACGGTACGCCTTTTTTCG
TGGCGCCCGAGGTTATCCGCGCGGAGACGTACACACCCGCTGTGGATATC
TGGTCGTTGGGCGTGCTGGCGTACAACATGCTGAGCGGCAAACTGCCGTT
CGACGGCAACAATATCAAGGAGGTGCTACGGCGCGTGCGCAGCGGCAAGT
ACTCGTTCCCGGACGCGGAGTGGGCGGATATATCGGCGCATGCGAAGGAC
TTCATCCATGGGCTGTTGGAACTTGAGCCCAAGCGACGGCTGACGGCGCA
TCAGGCGCTGCAACACCCGTGGCTGACATCGAGCGACATCTCGGAGCGCG
CCATCACGAACGACCGGTCGGCGCTGGGTTACGAGCAGCGCAAGCTGCGA
ATGTCGTCGATGGCGATCGATGACGTGGCGGGGTTGTTGAGCCTGGAGGA
AGACGAGGACCATGCGGACGACCACGGGCTGCGTGCGCTGTCGCGGCTGT
TCCCGGGAAAGAGCAGTAAGAGCGCAAAGAGCTCGCGGTCATCGGGGTCG
AGCCGGGGGCGTGCCGCGGTGGAGCAGCGCGCACGAGACATGGACGACAG
CGCGGCGGTGAGCAACGCGGCGCCGCTGCGCATCGCGCAGGTGGCGGAGG
AGGAAGGGGCGCTGAGCGAGGTGTCAACGGGCAGTCAGCTACAGGCGGTG
GGTGAGTTTGGGGAGTTTGCACGGTGGGAGGAGGCGCTACGGCCCAACAT
GGTGGCGTGGGCGGACGGCGGGCGTGGCGGCGGGCGCGGCGGCGGCGGAG
GAGGAGGAGGCGGCGCGTATCAAGGCGGGCTGCAGTTCAACGATAAGTTC
ACCGGCGGGAGCGCGGACGACTTTGCGCTGCCGGCCATCCTGTCGGTGAA
GGACATTGTGCGACGGAAGCGGGAGGCGACGAGCGGCGGCGGCGACGGCG
GCGGCGTGGGCAGAGGCGCGGCGATTGCGCATGAGAGCGACTCGGACGGC
GATGACTTCGCTACGGCCGTGGAGAGCAGGGCGCTGGTGTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:74343..76284-

>Ggra10199.t1 ID=Ggra10199.t1|Name=Ggra10199.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1821bp|location=Sequence derived from alignment at tig00000016_pilon:74343..76284- (Gracilaria gracilis GNS1m male)
ATGAGCGCCTTGCGACATGGCCCGCCGCTGGCCATGAATGGCTACATGGA
CAAGGAGGGCCGCAAGTTGCGTGCCAGGAAGACGCGCTACTTCAAGCTCA
AGGATTCCGCTCTCTTCAATCATCGCCGGAAGGATTCGCTTCCTACATGG
GGTGTCAGCCTCATCGACAGTCGCGTGGCCGTCGGTCACAAGGGCGAAAT
CATCGTGCAGTTATTTGACGGCAAGAAGATTTTGCTCTTCCCGCACTCAA
GATCCGAGTGTGACCAATGGGTCGACCTGCTGCAGCGCGCGTCGCGCCGC
AAGATAGGCAACTACTACGGAGTCACCGGCCTCGTTGGCATGGGCTCCTT
TGCAGAGGTGCGCATAGGCTATGACAAGTCGTCGGGCCAGCAAGTCGCCA
TCAAGGTCATGAAGAAGAACAAGCGCGATACCGAGCTCATGCGAAGCGTC
GAGTGTGAGATGAACTTCATCTCCAAGAACATTGACCACTGCAACATTGT
GGGCACGTATGACGTGTTCGACACCCGTGACAACCTGTTTATTGTCATGG
AGTACATGCCGGGCGGTATGTTGTACGACATCCTCGCTAACGAGGGCTAC
TTTTCGGAGAAGAACGCCGCCAGCGTTATGAGCGATCTGCTTCAGGCCGT
ACACTGTCTGCACGATAACGATATCGTGCACCGCGATATCAAGCCGGAGA
ACGTGTTGGCCGTCAACAAGACGTGGCCTCTCAACGTCAAGCTGGCCGAT
TTCGGCCTAGCTGATTTTGTGCTGGAGAACTCATTCGGCGAGAAGTCCAC
GTGCGGCATGTACGGTACGCCTTTTTTCGTGGCGCCCGAGGTTATCCGCG
CGGAGACGTACACACCCGCTGTGGATATCTGGTCGTTGGGCGTGCTGGCG
TACAACATGCTGAGCGGCAAACTGCCGTTCGACGGCAACAATATCAAGGA
GGTGCTACGGCGCGTGCGCAGCGGCAAGTACTCGTTCCCGGACGCGGAGT
GGGCGGATATATCGGCGCATGCGAAGGACTTCATCCATGGGCTGTTGGAA
CTTGAGCCCAAGCGACGGCTGACGGCGCATCAGGCGCTGCAACACCCGTG
GCTGACATCGAGCGACATCTCGGAGCGCGCCATCACGAACGACCGGTCGG
CGCTGGGTTACGAGCAGCGCAAGCTGCGAATGTCGTCGATGGCGATCGAT
GACGTGGCGGGGTTGTTGAGCCTGGAGGAAGACGAGGACCATGCGGACGA
CCACGGGCTGCGTGCGCTGTCGCGGCTGTTCCCGGGAAAGAGCAGTAAGA
GCGCAAAGAGCTCGCGGTCATCGGGGTCGAGCCGGGGGCGTGCCGCGGTG
GAGCAGCGCGCACGAGACATGGACGACAGCGCGGCGGTGAGCAACGCGGC
GCCGCTGCGCATCGCGCAGGTGGCGGAGGAGGAAGGGGCGCTGAGCGAGG
TGTCAACGGGCAGTCAGCTACAGGCGGTGGGTGAGTTTGGGGAGTTTGCA
CGGTGGGAGGAGGCGCTACGGCCCAACATGGTGGCGTGGGCGGACGGCGG
GCGTGGCGGCGGGCGCGGCGGCGGCGGAGGAGGAGGAGGCGGCGCGTATC
AAGGCGGGCTGCAGTTCAACGATAAGTTCACCGGCGGGAGCGCGGACGAC
TTTGCGCTGCCGGCCATCCTGTCGGTGAAGGACATTGTGCGACGGAAGCG
GGAGGCGACGAGCGGCGGCGGCGACGGCGGCGGCGTGGGCAGAGGCGCGG
CGATTGCGCATGAGAGCGACTCGGACGGCGATGACTTCGCTACGGCCGTG
GAGAGCAGGGCGCTGGTGTAA
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