Ggra10198.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10198.t1
Unique NameGgra10198.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:73013..74098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_12030T0
Preferred nameDOT5
PFAMsAhpC-TSA
Max annot lvl4751|Fungi
KEGG koko:K03564
GOsGO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019430,GO:0019725,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0045454,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0051920,GO:0055114,GO:0061687,GO:0061691,GO:0061692,GO:0065007,GO:0065008,GO:0070301,GO:0070887,GO:0071236,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
Evalue2.61e-14
EggNOG OGsCOG1225@1|root,KOG0855@2759|Eukaryota,3A1K4@33154|Opisthokonta,3P2T2@4751|Fungi
EC1.11.1.15
DescriptionDisrupter of telomere silencing protein
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10198Ggra10198Gracilaria gracilis GNS1m malegenetig00000016_pilon 73013..74098 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10198.t1.stop1Ggra10198.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 73013..73015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10198.t1.CDS1Ggra10198.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 73013..74098 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10198.t1.exon1Ggra10198.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 73013..74098 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10198.t1.start1Ggra10198.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 74096..74098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10198.t1Ggra10198.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 73013..74098 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10198.t1 ID=Ggra10198.t1|Name=Ggra10198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp
MVSTRSKTGAAPPRSPLKTISKKRHSKQAASPRQSAPPTFPDVSLSNDSG
SIVSTHSLLSDAVPGLILFTYPRANTGGCTTQAKGLSALRERASAAGYNI
VGCSYDSVKSQASWKVKSSIPLMLLSDTPSSGLLRKLSVHKPPRGVKRSV
FVIARKDDRLHIVMAKRAVSPKDCIALMEQYIKDNPLKPPSANSQPDQHM
TDPDAQPQQKPSAPDDAAPEAAAPDAAPVADKPQDKQHAEQPKHPDQPTD
AKHAANHDEAHQAAPKQPAAPAPAAEQTNHKPADAPEPQPDHTASKPTAP
KEATPPTTESKPVEEHASSKGQKDAEDAKPEEKAEQKPIAVSADEKPVVM
DVEKPKEESKA*
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spliced messenger RNA

>Ggra10198.t1 ID=Ggra10198.t1|Name=Ggra10198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000016_pilon:73013..74098- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCCACGCGCAGCAAGACCGGCGCTGCGCCGCCTCGCTCCCCGCT
CAAGACCATCTCCAAGAAGCGTCACTCCAAGCAAGCCGCTTCGCCGCGCC
AATCCGCCCCGCCCACCTTCCCGGATGTGTCGCTGTCCAATGACTCTGGC
TCCATCGTGTCTACCCACTCGCTGCTGTCCGACGCCGTGCCCGGCCTCAT
CCTCTTCACGTACCCGCGCGCCAACACGGGCGGCTGCACCACGCAGGCCA
AGGGGCTCTCCGCGCTGCGCGAGCGCGCGTCTGCCGCCGGTTACAACATC
GTCGGCTGTAGCTACGACTCGGTTAAGAGCCAGGCGTCCTGGAAGGTCAA
GAGCTCCATCCCGCTCATGCTGCTCAGCGATACGCCCAGCTCCGGTTTGC
TGCGCAAACTGTCCGTGCACAAGCCGCCGCGCGGCGTCAAGCGCTCCGTG
TTCGTCATTGCGCGCAAGGACGACCGCTTGCACATCGTTATGGCCAAACG
CGCCGTGTCGCCCAAGGACTGCATCGCGCTCATGGAGCAGTACATAAAGG
ACAACCCGCTTAAGCCGCCCAGTGCGAACTCTCAACCCGATCAGCACATG
ACCGATCCCGACGCCCAACCGCAGCAGAAGCCGTCCGCTCCTGATGATGC
CGCTCCTGAAGCTGCCGCGCCTGATGCTGCGCCTGTTGCCGACAAGCCGC
AGGACAAACAGCATGCGGAGCAGCCGAAACACCCTGATCAGCCTACAGAC
GCCAAGCACGCTGCCAATCACGATGAGGCACACCAAGCTGCGCCGAAACA
ACCGGCTGCGCCCGCACCCGCTGCGGAGCAAACCAACCATAAGCCCGCTG
ATGCTCCCGAGCCGCAGCCCGATCACACTGCAAGCAAACCCACCGCCCCC
AAAGAAGCGACGCCGCCCACAACGGAAAGCAAGCCGGTTGAGGAACACGC
TTCCTCCAAAGGGCAAAAAGACGCAGAAGACGCCAAGCCGGAGGAGAAAG
CCGAACAGAAACCGATCGCTGTGAGTGCTGATGAAAAACCGGTCGTAATG
GACGTGGAGAAGCCGAAAGAGGAAAGCAAGGCTTGA
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protein sequence of Ggra10198.t1

>Ggra10198.t1 ID=Ggra10198.t1|Name=Ggra10198.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MVSTRSKTGAAPPRSPLKTISKKRHSKQAASPRQSAPPTFPDVSLSNDSG
SIVSTHSLLSDAVPGLILFTYPRANTGGCTTQAKGLSALRERASAAGYNI
VGCSYDSVKSQASWKVKSSIPLMLLSDTPSSGLLRKLSVHKPPRGVKRSV
FVIARKDDRLHIVMAKRAVSPKDCIALMEQYIKDNPLKPPSANSQPDQHM
TDPDAQPQQKPSAPDDAAPEAAAPDAAPVADKPQDKQHAEQPKHPDQPTD
AKHAANHDEAHQAAPKQPAAPAPAAEQTNHKPADAPEPQPDHTASKPTAP
KEATPPTTESKPVEEHASSKGQKDAEDAKPEEKAEQKPIAVSADEKPVVM
DVEKPKEESKA*
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mRNA from alignment at tig00000016_pilon:73013..74098-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10198.t1 ID=Ggra10198.t1|Name=Ggra10198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000016_pilon:73013..74098- (Gracilaria gracilis GNS1m male)
ATGGTGTCCACGCGCAGCAAGACCGGCGCTGCGCCGCCTCGCTCCCCGCT
CAAGACCATCTCCAAGAAGCGTCACTCCAAGCAAGCCGCTTCGCCGCGCC
AATCCGCCCCGCCCACCTTCCCGGATGTGTCGCTGTCCAATGACTCTGGC
TCCATCGTGTCTACCCACTCGCTGCTGTCCGACGCCGTGCCCGGCCTCAT
CCTCTTCACGTACCCGCGCGCCAACACGGGCGGCTGCACCACGCAGGCCA
AGGGGCTCTCCGCGCTGCGCGAGCGCGCGTCTGCCGCCGGTTACAACATC
GTCGGCTGTAGCTACGACTCGGTTAAGAGCCAGGCGTCCTGGAAGGTCAA
GAGCTCCATCCCGCTCATGCTGCTCAGCGATACGCCCAGCTCCGGTTTGC
TGCGCAAACTGTCCGTGCACAAGCCGCCGCGCGGCGTCAAGCGCTCCGTG
TTCGTCATTGCGCGCAAGGACGACCGCTTGCACATCGTTATGGCCAAACG
CGCCGTGTCGCCCAAGGACTGCATCGCGCTCATGGAGCAGTACATAAAGG
ACAACCCGCTTAAGCCGCCCAGTGCGAACTCTCAACCCGATCAGCACATG
ACCGATCCCGACGCCCAACCGCAGCAGAAGCCGTCCGCTCCTGATGATGC
CGCTCCTGAAGCTGCCGCGCCTGATGCTGCGCCTGTTGCCGACAAGCCGC
AGGACAAACAGCATGCGGAGCAGCCGAAACACCCTGATCAGCCTACAGAC
GCCAAGCACGCTGCCAATCACGATGAGGCACACCAAGCTGCGCCGAAACA
ACCGGCTGCGCCCGCACCCGCTGCGGAGCAAACCAACCATAAGCCCGCTG
ATGCTCCCGAGCCGCAGCCCGATCACACTGCAAGCAAACCCACCGCCCCC
AAAGAAGCGACGCCGCCCACAACGGAAAGCAAGCCGGTTGAGGAACACGC
TTCCTCCAAAGGGCAAAAAGACGCAGAAGACGCCAAGCCGGAGGAGAAAG
CCGAACAGAAACCGATCGCTGTGAGTGCTGATGAAAAACCGGTCGTAATG
GACGTGGAGAAGCCGAAAGAGGAAAGCAAGGCTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:73013..74098-

>Ggra10198.t1 ID=Ggra10198.t1|Name=Ggra10198.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000016_pilon:73013..74098- (Gracilaria gracilis GNS1m male)
ATGGTGTCCACGCGCAGCAAGACCGGCGCTGCGCCGCCTCGCTCCCCGCT
CAAGACCATCTCCAAGAAGCGTCACTCCAAGCAAGCCGCTTCGCCGCGCC
AATCCGCCCCGCCCACCTTCCCGGATGTGTCGCTGTCCAATGACTCTGGC
TCCATCGTGTCTACCCACTCGCTGCTGTCCGACGCCGTGCCCGGCCTCAT
CCTCTTCACGTACCCGCGCGCCAACACGGGCGGCTGCACCACGCAGGCCA
AGGGGCTCTCCGCGCTGCGCGAGCGCGCGTCTGCCGCCGGTTACAACATC
GTCGGCTGTAGCTACGACTCGGTTAAGAGCCAGGCGTCCTGGAAGGTCAA
GAGCTCCATCCCGCTCATGCTGCTCAGCGATACGCCCAGCTCCGGTTTGC
TGCGCAAACTGTCCGTGCACAAGCCGCCGCGCGGCGTCAAGCGCTCCGTG
TTCGTCATTGCGCGCAAGGACGACCGCTTGCACATCGTTATGGCCAAACG
CGCCGTGTCGCCCAAGGACTGCATCGCGCTCATGGAGCAGTACATAAAGG
ACAACCCGCTTAAGCCGCCCAGTGCGAACTCTCAACCCGATCAGCACATG
ACCGATCCCGACGCCCAACCGCAGCAGAAGCCGTCCGCTCCTGATGATGC
CGCTCCTGAAGCTGCCGCGCCTGATGCTGCGCCTGTTGCCGACAAGCCGC
AGGACAAACAGCATGCGGAGCAGCCGAAACACCCTGATCAGCCTACAGAC
GCCAAGCACGCTGCCAATCACGATGAGGCACACCAAGCTGCGCCGAAACA
ACCGGCTGCGCCCGCACCCGCTGCGGAGCAAACCAACCATAAGCCCGCTG
ATGCTCCCGAGCCGCAGCCCGATCACACTGCAAGCAAACCCACCGCCCCC
AAAGAAGCGACGCCGCCCACAACGGAAAGCAAGCCGGTTGAGGAACACGC
TTCCTCCAAAGGGCAAAAAGACGCAGAAGACGCCAAGCCGGAGGAGAAAG
CCGAACAGAAACCGATCGCTGTGAGTGCTGATGAAAAACCGGTCGTAATG
GACGTGGAGAAGCCGAAAGAGGAAAGCAAGGCTTGA
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