Ggra10196.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10196.t1
Unique NameGgra10196.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:69046..70329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703384.1
Preferred nameADSS
PFAMsAdenylsucc_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00458,RC00459
KEGG koko:K01939
KEGG ReactionR01135
KEGG Pathwayko00230,ko00250,ko01100,map00230,map00250,map01100
KEGG ModuleM00049
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003779,GO:0003824,GO:0003924,GO:0004019,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006106,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006520,GO:0006531,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007517,GO:0007519,GO:0008092,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0014706,GO:0014902,GO:0014904,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019001,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0030154,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0042278,GO:0042301,GO:0042451,GO:0042455,GO:0042592,GO:0042692,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043565,GO:0043648,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046686,GO:0046716,GO:0046983,GO:0048046,GO:0048468,GO:0048513,GO:0048731,GO:0048741,GO:0048747,GO:0048856,GO:0048869,GO:0050896,GO:0051015,GO:0051146,GO:0051716,GO:0055001,GO:0055002,GO:0055086,GO:0060249,GO:0060537,GO:0060538,GO:0061061,GO:0061483,GO:0065007,GO:0065008,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1990837
Evalue6.64e-183
EggNOG OGsCOG0104@1|root,KOG1355@2759|Eukaryota
EC6.3.4.4
Descriptionadenylosuccinate synthase activity
COG categoryF
BiGG ReactioniRC1080.CRv4_Au5_s17_g7726_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10196Ggra10196Gracilaria gracilis GNS1m malegenetig00000016_pilon 69046..70329 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10196.t1.start1Ggra10196.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 69046..69048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10196.t1.CDS1Ggra10196.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 69046..70329 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10196.t1.exon1Ggra10196.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 69046..70329 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10196.t1.stop1Ggra10196.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 70327..70329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10196.t1Ggra10196.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 69046..70329 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10196.t1 ID=Ggra10196.t1|Name=Ggra10196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=428bp
MKPGGEVLVVLGAQWGDEGKGKLIDILSRDYDLLARAAGGANAGHTIVVD
SVKYAFHLLPSGLLHDHVKAVIGNGVVLHVPKFMSELEQLREKGVDAAPR
IRISDRCHLLFDYHQIVDGLREVERGKAKIGTTGRGIGPCYSSKANRTNM
RVGDLRNFRSFPAAFRRSLASKHKRFHNFDYDVRKEIAKYYEYAKQLEPC
ITDTVAVLNNGITQNTHAVLVEGANAALLDIDFGTYPFVTSSNCTAGGVC
TGLGIPPRAIKEVIAVVKAYTTRVGEGPFPTELHDHLGVTFQKEGHEYGT
TTARPRRCGWLDAFMLQYTHSLNGYTQICLTKLDVLSHFETLKIGVSYIV
RGRKMTYYPGSLKLLGEAEVEYVEMPGWKGVDISGIRKFEDLPKNAQNYV
LKIEELVKVPIISIGVGPSREAIIFRE*
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spliced messenger RNA

>Ggra10196.t1 ID=Ggra10196.t1|Name=Ggra10196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000016_pilon:69046..70329+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCTGGAGGAGAAGTACTTGTCGTGCTCGGTGCCCAATGGGGCGA
CGAAGGAAAGGGAAAGTTAATCGACATTCTCAGCAGAGACTATGATCTCC
TCGCACGGGCTGCTGGCGGCGCCAACGCGGGCCATACCATTGTCGTTGAT
TCCGTCAAATATGCCTTTCATTTGCTTCCGTCTGGTCTTCTTCATGACCA
CGTCAAGGCCGTTATTGGAAATGGGGTCGTTTTACATGTGCCCAAGTTTA
TGTCCGAACTCGAACAATTGCGAGAAAAGGGCGTGGATGCCGCCCCGCGT
ATTCGCATATCTGATCGCTGCCACCTTCTTTTCGATTATCACCAGATTGT
GGATGGTCTGCGCGAAGTCGAGAGGGGAAAGGCCAAGATTGGCACTACGG
GAAGAGGTATTGGCCCGTGTTATTCTTCCAAAGCCAACCGTACAAACATG
CGTGTCGGCGATTTGCGCAACTTTCGTTCCTTTCCCGCCGCGTTTAGAAG
AAGTCTGGCATCGAAACACAAGCGCTTCCACAATTTCGACTATGATGTCA
GGAAGGAAATTGCCAAGTATTATGAATACGCCAAGCAACTCGAGCCCTGT
ATCACCGATACTGTTGCTGTGTTGAACAATGGAATAACCCAAAACACTCA
TGCTGTGCTTGTTGAAGGAGCAAATGCAGCGCTTCTTGACATTGACTTTG
GAACCTATCCGTTTGTCACTTCGAGTAACTGCACCGCTGGTGGAGTTTGC
ACAGGTCTAGGAATCCCCCCTCGTGCTATCAAGGAGGTTATTGCCGTCGT
AAAGGCTTATACTACTCGCGTGGGTGAAGGGCCTTTCCCGACGGAACTAC
ACGACCATTTGGGTGTTACATTTCAGAAGGAAGGTCATGAATATGGCACC
ACCACAGCAAGACCAAGGAGATGTGGCTGGCTAGATGCTTTCATGCTGCA
GTATACACATTCCCTCAATGGGTACACTCAGATTTGTCTAACAAAACTTG
ACGTGCTATCGCATTTTGAGACGCTCAAGATCGGCGTTTCATACATTGTG
CGTGGTAGGAAAATGACTTACTATCCTGGATCTCTTAAACTACTCGGAGA
GGCTGAAGTGGAGTACGTTGAGATGCCAGGATGGAAAGGCGTCGATATTT
CAGGTATTCGCAAGTTTGAAGATTTGCCGAAAAACGCACAAAACTACGTT
CTCAAGATTGAAGAACTGGTTAAGGTTCCTATCATATCTATCGGAGTTGG
ACCGAGTCGCGAGGCTATCATATTCCGAGAATAA
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protein sequence of Ggra10196.t1

>Ggra10196.t1 ID=Ggra10196.t1|Name=Ggra10196.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MKPGGEVLVVLGAQWGDEGKGKLIDILSRDYDLLARAAGGANAGHTIVVD
SVKYAFHLLPSGLLHDHVKAVIGNGVVLHVPKFMSELEQLREKGVDAAPR
IRISDRCHLLFDYHQIVDGLREVERGKAKIGTTGRGIGPCYSSKANRTNM
RVGDLRNFRSFPAAFRRSLASKHKRFHNFDYDVRKEIAKYYEYAKQLEPC
ITDTVAVLNNGITQNTHAVLVEGANAALLDIDFGTYPFVTSSNCTAGGVC
TGLGIPPRAIKEVIAVVKAYTTRVGEGPFPTELHDHLGVTFQKEGHEYGT
TTARPRRCGWLDAFMLQYTHSLNGYTQICLTKLDVLSHFETLKIGVSYIV
RGRKMTYYPGSLKLLGEAEVEYVEMPGWKGVDISGIRKFEDLPKNAQNYV
LKIEELVKVPIISIGVGPSREAIIFRE*
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mRNA from alignment at tig00000016_pilon:69046..70329+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10196.t1 ID=Ggra10196.t1|Name=Ggra10196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000016_pilon:69046..70329+ (Gracilaria gracilis GNS1m male)
ATGAAACCTGGAGGAGAAGTACTTGTCGTGCTCGGTGCCCAATGGGGCGA
CGAAGGAAAGGGAAAGTTAATCGACATTCTCAGCAGAGACTATGATCTCC
TCGCACGGGCTGCTGGCGGCGCCAACGCGGGCCATACCATTGTCGTTGAT
TCCGTCAAATATGCCTTTCATTTGCTTCCGTCTGGTCTTCTTCATGACCA
CGTCAAGGCCGTTATTGGAAATGGGGTCGTTTTACATGTGCCCAAGTTTA
TGTCCGAACTCGAACAATTGCGAGAAAAGGGCGTGGATGCCGCCCCGCGT
ATTCGCATATCTGATCGCTGCCACCTTCTTTTCGATTATCACCAGATTGT
GGATGGTCTGCGCGAAGTCGAGAGGGGAAAGGCCAAGATTGGCACTACGG
GAAGAGGTATTGGCCCGTGTTATTCTTCCAAAGCCAACCGTACAAACATG
CGTGTCGGCGATTTGCGCAACTTTCGTTCCTTTCCCGCCGCGTTTAGAAG
AAGTCTGGCATCGAAACACAAGCGCTTCCACAATTTCGACTATGATGTCA
GGAAGGAAATTGCCAAGTATTATGAATACGCCAAGCAACTCGAGCCCTGT
ATCACCGATACTGTTGCTGTGTTGAACAATGGAATAACCCAAAACACTCA
TGCTGTGCTTGTTGAAGGAGCAAATGCAGCGCTTCTTGACATTGACTTTG
GAACCTATCCGTTTGTCACTTCGAGTAACTGCACCGCTGGTGGAGTTTGC
ACAGGTCTAGGAATCCCCCCTCGTGCTATCAAGGAGGTTATTGCCGTCGT
AAAGGCTTATACTACTCGCGTGGGTGAAGGGCCTTTCCCGACGGAACTAC
ACGACCATTTGGGTGTTACATTTCAGAAGGAAGGTCATGAATATGGCACC
ACCACAGCAAGACCAAGGAGATGTGGCTGGCTAGATGCTTTCATGCTGCA
GTATACACATTCCCTCAATGGGTACACTCAGATTTGTCTAACAAAACTTG
ACGTGCTATCGCATTTTGAGACGCTCAAGATCGGCGTTTCATACATTGTG
CGTGGTAGGAAAATGACTTACTATCCTGGATCTCTTAAACTACTCGGAGA
GGCTGAAGTGGAGTACGTTGAGATGCCAGGATGGAAAGGCGTCGATATTT
CAGGTATTCGCAAGTTTGAAGATTTGCCGAAAAACGCACAAAACTACGTT
CTCAAGATTGAAGAACTGGTTAAGGTTCCTATCATATCTATCGGAGTTGG
ACCGAGTCGCGAGGCTATCATATTCCGAGAATAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:69046..70329+

>Ggra10196.t1 ID=Ggra10196.t1|Name=Ggra10196.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000016_pilon:69046..70329+ (Gracilaria gracilis GNS1m male)
ATGAAACCTGGAGGAGAAGTACTTGTCGTGCTCGGTGCCCAATGGGGCGA
CGAAGGAAAGGGAAAGTTAATCGACATTCTCAGCAGAGACTATGATCTCC
TCGCACGGGCTGCTGGCGGCGCCAACGCGGGCCATACCATTGTCGTTGAT
TCCGTCAAATATGCCTTTCATTTGCTTCCGTCTGGTCTTCTTCATGACCA
CGTCAAGGCCGTTATTGGAAATGGGGTCGTTTTACATGTGCCCAAGTTTA
TGTCCGAACTCGAACAATTGCGAGAAAAGGGCGTGGATGCCGCCCCGCGT
ATTCGCATATCTGATCGCTGCCACCTTCTTTTCGATTATCACCAGATTGT
GGATGGTCTGCGCGAAGTCGAGAGGGGAAAGGCCAAGATTGGCACTACGG
GAAGAGGTATTGGCCCGTGTTATTCTTCCAAAGCCAACCGTACAAACATG
CGTGTCGGCGATTTGCGCAACTTTCGTTCCTTTCCCGCCGCGTTTAGAAG
AAGTCTGGCATCGAAACACAAGCGCTTCCACAATTTCGACTATGATGTCA
GGAAGGAAATTGCCAAGTATTATGAATACGCCAAGCAACTCGAGCCCTGT
ATCACCGATACTGTTGCTGTGTTGAACAATGGAATAACCCAAAACACTCA
TGCTGTGCTTGTTGAAGGAGCAAATGCAGCGCTTCTTGACATTGACTTTG
GAACCTATCCGTTTGTCACTTCGAGTAACTGCACCGCTGGTGGAGTTTGC
ACAGGTCTAGGAATCCCCCCTCGTGCTATCAAGGAGGTTATTGCCGTCGT
AAAGGCTTATACTACTCGCGTGGGTGAAGGGCCTTTCCCGACGGAACTAC
ACGACCATTTGGGTGTTACATTTCAGAAGGAAGGTCATGAATATGGCACC
ACCACAGCAAGACCAAGGAGATGTGGCTGGCTAGATGCTTTCATGCTGCA
GTATACACATTCCCTCAATGGGTACACTCAGATTTGTCTAACAAAACTTG
ACGTGCTATCGCATTTTGAGACGCTCAAGATCGGCGTTTCATACATTGTG
CGTGGTAGGAAAATGACTTACTATCCTGGATCTCTTAAACTACTCGGAGA
GGCTGAAGTGGAGTACGTTGAGATGCCAGGATGGAAAGGCGTCGATATTT
CAGGTATTCGCAAGTTTGAAGATTTGCCGAAAAACGCACAAAACTACGTT
CTCAAGATTGAAGAACTGGTTAAGGTTCCTATCATATCTATCGGAGTTGG
ACCGAGTCGCGAGGCTATCATATTCCGAGAATAA
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